TCONS_00067845 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067845
Unique NameTCONS_00067845
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067845 ID=TCONS_00067845|Name=TCONS_00067845|organism=Clytia hemisphaerica|type=transcript|length=604bp
CCCCTCTCTCTTCAATGTTGTGACGCCAAAAtctattcaaaaaatttagc
AAACCGCCTTAAAGCTGTGATGGAAGACATCGTGTCTCCGGATCAAGTGT
GTGCTGTGCCTGGTCGTCATAGAACTTatatctttttcaaaacacaaact
ttggaaatatcatgaaaatatgatgttttaatGAATTTCAGAATTCGAAA
TATCATATGGCATTTCAACAATTGGAGGTCATCGCGCTGTCTTTTTTTGT
ACGAAAACAAGCAAGACTCCTGTCTTTTTCTATTTACTAAGATCTGTAGG
AATGTGCGGAGGTATGTCTTTCTTTCTGAGCAGAAAACCAAGTATGCTTG
TGATCCTTTTTTATCCTAGCTCTGGAGTATTctctttttatctgaaaaag
ctaatcaaaattcagaaaacgcgtgtcaaactaaaaatcaaaaacattca
gACTGAGCGAGAAATCATTTTCACCAACTTAACGCGACAAGGACAAAAGT
TGAAAAccaacaaaacaaaacagcgacaaaccttaaaaccaacaacaata
acaaaataaaaacaaagaaccaaaaagtaacaacccacaaataaacaatc
ttac
Run BLAST on NCBI

transcript from alignment at scaffold_476:215945..216548

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067845 ID=TCONS_00067845|Name=TCONS_00067845|organism=Clytia hemisphaerica|type=transcript|length=604bp|location=Sequence derived from alignment at scaffold_476:215945..216548 (Clytia hemisphaerica)
gtaagattgtttatttgtgggttgttactttttggttctttgtttttatt
ttgttattgttgttggttttaaggtttgtcgctgttttgttttgttggTT
TTCAACTTTTGTCCTTGTCGCGTTAAGTTGGTGAAAATGATTTCTCGCTC
AGTctgaatgtttttgatttttagtttgacacgcgttttctgaattttga
ttagctttttcagataaaaagagAATACTCCAGAGCTAGGATAAAAAAGG
ATCACAAGCATACTTGGTTTTCTGCTCAGAAAGAAAGACATACCTCCGCA
CATTCCTACAGATCTTAGTAAATAGAAAAAGACAGGAGTCTTGCTTGTTT
TCGTACAAAAAAAGACAGCGCGATGACCTCCAATTGTTGAAATGCCATAT
GATATTTCGAATTCTGAAATTCattaaaacatcatattttcatgatattt
ccaaagtttgtgttttgaaaaagatatAAGTTCTATGACGACCAGGCACA
GCACACACTTGATCCGGAGACACGATGTCTTCCATCACAGCTTTAAGGCG
GTTTgctaaattttttgaatagaTTTTGGCGTCACAACATTGAAGAGAGA
GGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042370XLOC_042370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067845-exon-scaffold_476-1491911889:215945..216548TCONS_00067845-exon-scaffold_476-1491911889:215945..216548Clytia hemisphaericaexon
TCONS_00067845-exon-scaffold_476-1510915933:215945..216548TCONS_00067845-exon-scaffold_476-1510915933:215945..216548Clytia hemisphaericaexon
TCONS_00067845-exon-scaffold_476-1575043694:215945..216548TCONS_00067845-exon-scaffold_476-1575043694:215945..216548Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:215945..216548 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.449085	0.613101	0.305086	1.69138	0.847863	1.05285	0.57737	0.540527	0.756871	0.750006	0.363987	1.0169	0.65708	0.806453	0.153003	0.54732	0.606828	0.760197	0.954775	0	0.434201	0.254146	0.205965	0.280878	0.964326	0.602447	0.369471	0.131437	0.0996899	0.101568
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067845 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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