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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067863 ID=TCONS_00067863|Name=TCONS_00067863|organism=Clytia hemisphaerica|type=transcript|length=1963bp TAAAAGGTTTTCTCAAAACTCCTTTACTCGTTCTTTATTCAGGATGGCAC AGGTTGACAAAGCCGTCACTGGTATTGTCTCGCAGCAAGATGAATTCTTA ACCATGATGCAACCCTTTGATCAAATGTCAGCTAAACTATCAGGTGCTCC AATGGCTATCAATATTCTTGGTCAACTGTGTTATATCGCGACAGGAGTTG AAGTGGATTTGAGAGTTGAAGGAGTTAATGAGAAATACAAGCATTTAACT AATACAAATTCATTGCGTGATTGTCTTATGCAAGTTTCACAAGCTGGGAA AAAAGCCTTTCGAACAGCCGATGGAAATATGGAATACATATCAATGAGCT GCGAAAGGGTACCTGGATTAATGAAATCTGCATTGAAAATTCTGTTGTCT CCAGAATCGGAACCTTCAGACATTCAGAATTTTCTTCCTGAAAGACTTCT GgcaatcaaaaaagtttccGACGATGCCAAGGTTAAATGTGAAGAGGTCG TGAAAGAATTTACGCATGTTATTGAAGTTATTGAAGAAGTTCAACTGGGT GCACTTGCCAAGCAGACCGATGTAAAAACTGCTCTAGAGCATCTACAACT TAATATCGATAATGCTAAGCGAGAGAGTGAACGCTTGGATCAGGTTACAA AAGCGAACGAAAAGGCATTAAAAGACATGGAAGGACAAGTCAAGAGTGCA AAGGAAGATTGGAAAGATGCAATGGCTTCTATGCCAAGTGCTCAAGATTT GATGATGGCATCGCTGACTGAAAGCTTGACAAGCATCGTTAAAACTGGAG CAAATGCTGCCGTTCAAATGGGAACCCAATATGCNAGCATCGTTAACACT GGAGCAAATGCTGCCATTCAAATGGGAACCCAATATGTAAACATGATGAC AATGAGCGCCATGGGCGGAATGGATGATATGCCTCCTCAACAAATGGGTG GTATGCAAAATCCTCAGCAAGCACCAAATCAAAATGTGCAGTATCCAGCA CAAGGCACACATGTAGAAAATCCTAAGGTTGATTTCTTGCGAGATAAATA CATGGTAAAGAACAGCCAAATCAACCTCTTCGCTAATCTATTGCTGAATT ATTTTGACGACAGTGATGGTGATATCAAACTAAGAGAAAAAGTGGTTGAA AAAGGAGACAAAGATATACAAGTTGGTAAAATCCTTGAAGCTGAAACCTT TTTTAATATGATGCAAAATAATATTAAAGGTATGGACGCTGGAGAtcaca aaacaaccaaaaaccaACTACTGAGATTGATTGACAATGCCCTCAAAACA ATTGAAGGAATCCAGAAGCTTCCTGAAAGCGTTGCAACGATTCAAAAACT CTTCGATCAagcagaaaaaatcatttcacaATCAGACACGATCGAATCAA GTTTAAAAGTCAAAGCAGGAATCTCTCAATTTTATAATCCAAATCCAACT CTACCACGATCACAGGCACCATCAGGCAGCTATGGCAATCTCTCTCAAAC CATGAATGATAATGCTCACAAAAAGGTTGAAGCCTATCGCTCACAATTGG ATTCTCTTCGAATTCGcgctgaagaagaaaaacagcGGTTTAATGCATCA CAGCAAGTTTTATCTGGAGAGATGAGGAagttagaaaatttcaaaagtag AGATGCAACGAGTTTTCATATGATCAAAGTCTTAATGCAAGAAAAGNGAG AGATGAGGAagttagaaaatttcaaaagtagTGATGCAACGAGTCTTCAT ATGATCAAAGTCATAATGCAAGAAAAGATTGCACTTACTCTAGTCAAAGA AAGCTGGGCTGACCTTGTTCAATTTTTTACCTCAATGTCCAACTTAATCA TTTCAACACTGGCTCCTTCATTGAATATGTTTGTTGCTGACTCAGAGAGA GTCGCTAAATCCAAATCAGTCAAGAACATGGCAACAGAGGTCGTATTTCA AACAGCTTATCAN Run BLAST on NCBI protein sequence of TCONS_00067863-protein >TCONS_00067863-protein ID=TCONS_00067863-protein|Name=TCONS_00067863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=654bp
KRFSQNSFTRSLFRMAQVDKAVTGIVSQQDEFLTMMQPFDQMSAKLSGAP MAINILGQLCYIATGVEVDLRVEGVNEKYKHLTNTNSLRDCLMQVSQAGK KAFRTADGNMEYISMSCERVPGLMKSALKILLSPESEPSDIQNFLPERLL AIKKVSDDAKVKCEEVVKEFTHVIEVIEEVQLGALAKQTDVKTALEHLQL NIDNAKRESERLDQVTKANEKALKDMEGQVKSAKEDWKDAMASMPSAQDL MMASLTESLTSIVKTGANAAVQMGTQYXSIVNTGANAAIQMGTQYVNMMT MSAMGGMDDMPPQQMGGMQNPQQAPNQNVQYPAQGTHVENPKVDFLRDKY MVKNSQINLFANLLLNYFDDSDGDIKLREKVVEKGDKDIQVGKILEAETF FNMMQNNIKGMDAGDHKTTKNQLLRLIDNALKTIEGIQKLPESVATIQKL FDQAEKIISQSDTIESSLKVKAGISQFYNPNPTLPRSQAPSGSYGNLSQT MNDNAHKKVEAYRSQLDSLRIRAEEEKQRFNASQQVLSGEMRKLENFKSR DATSFHMIKVLMQEKXEMRKLENFKSSDATSLHMIKVIMQEKIALTLVKE SWADLVQFFTSMSNLIISTLAPSLNMFVADSERVAKSKSVKNMATEVVFQ TAYX Run BLAST on NCBI transcript from alignment at scaffold_477:2605..6642+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067863 ID=TCONS_00067863|Name=TCONS_00067863|organism=Clytia hemisphaerica|type=transcript|length=4038bp|location=Sequence derived from alignment at scaffold_477:2605..6642+ (Clytia hemisphaerica) TAAAAGGTTTTCTCAAAACTCCTTTACTCGTTCTTTATTCAGGATGGCAC
AGGTTGACAAAGCCGTCACTGGTATTGTCTCGCAGCAAGATGAATTCTTA
ACCATGATGCAACCCTTTGATCAAATGTCAGCTAAACTATCAGGTGCTCC
AATGGCTATCAATATTCTTGGTCAACTGTGTTATATCGCGACAGGAGTTG
AAGTGGATTTGAGAGTTGAAGGAGTTAATGAGAAATACAAGCATTTAACT
AATACAAATTCATTGCGTGATTGTCTTATGCAAGTTTCACAAGCTGGGAA
AAAAGCCTTTCGAACAGCCGATGGAAATATGGAATACATATCAATGAGCT
GCGAAAGGGTAATTATAgatttataaaaagttttcttattttgtcTTATA
TGAATTCAAAAGGGGTTTATCACTCGCTAGATAACAAgtattcccggggg
gggggtactagggttggcgaatgaggggtatgtgcggacgggaactccga
aaaccgacccctagagagactgatttttgctgaaaaggtgacccttagag
aaactttttgaattttttttttcgatttttgaaaaaagccatacccttag
agagactttattataattttttctctggaaatcaaaaaattttctaaaaa
tcctgaattttccgacccttagagagactaatttaaaactttctgatttt
ttccgacccttagagagactttgaaaggtgaaaaaaccgacccttaccgt
tcgcacatacccatcatccatttttgcataagtaccccccccccgggcaa
gtACTCTTGAACACTTTTACAAAGCATCCCATAAAAACCCACGGTAGATC
GAATTTTCTTATTATCTTGGAAAAAGTTTCATTTCGaatttttgctactt
tttggTTACTTATGTTTTGGCACAGTAGTACCATAAAGTCTCCTGATTTC
ATCTGTATACTTTCTGAAAAAACGGGTGCTTTTCGACTCCACCGAGCTAC
CATCTAGACGCTTTACTTTTGGTGCAAGTATTTTATGAGTTGCAAGTATT
CTATAAATATTCTCCGAAAAATGTAAACGGAGTTACTAGCAAGATTTCAA
CTCATAACaaattatttcaatatttgaaaTGAACATTCTCACGTATTGTT
TTTGTTGGATTCGCTAGTTGTCATGGATGCTTTTGTTCTCCGAAATGTTA
AACCCACGGTATCCCACAGCGCTTATTTTTGTGATTGCGTGACGGAAGGA
TTTTTTTGACGTGATGGCGTAAATTTTTGGATAAAACATCGGGATCGCAT
TGAAATGAAGTGCAAGTGCAATCGTGCATTAGCTTGATTGTAAAAACCAC
AATTATTACGCGAGTCAAAAATTAGTACCTATCTTAGCCAATTCGATTCA
TGGAGTTTACTCCTAGTTACCTAGGATAAACCCACTTTTCACAGAcctga
tttgattttttcagccagtagtGTTAATCATAACTGGCTGAAACTcgatg
tttttatggctggggatttgaattccattgttttcaagtcgatGGGAAGA
ATAgcatattttgcagtgaagataggtttatttgattatttccaCCGAGG
ACGATATCTTGGCCAAttcttccagtgggaaggggtctcaATGGTAGAAT
CTTTGAGGTATGGGTGTTAAGATGTAGGTTTTAAAgcctgattttttttc
aaaaaatcgaccCGTGTTTATTGCCTTGATTGACTGCTATCTTGAGAACT
NGATCTTTGAGGTATGGGTGTTGAGATATAGGTTCTAAAgcctgattttt
tttcaaaaaatcgtcCCGTGTTTATTGCCGTGATTGACTGCCATCTTGAG
AACTTTCTCGATACTTATTACCCATATTATTGAATGAAATGAAATAGCAA
GCAAATAAGAGTCTAATCGGAATTATGGTTACGCCTCCTACACCCTAATA
TTTTGTCCTCCGAACAGCAATCCATGGCATTGGTGTTGATTCTCTGAACC
TCGTTCTAAAGAATGGCAAAGTATCACTCATTACTACCCCAAACAAgata
tttcatttcattttttaattgatATGTCTCGTGTAAACCAAAtctttttg
tgaaatatttaagaaaattgaGTCTGTTTGAAGGGCATCTTctatgagaa
aaataattatgtACTTGAAATCAGAAGGCTTTAATAAGTACTTCTGTACC
AGAAATGAAGTCTCGTGAAGCAAAGTATGATATTTCCAAAAGTAGTTTGT
AATCTATTCTTTTAATGTCATATTCCAAGGATTATCTTTGCAATCTTGTA
AAAGAGTTCTTCAATCAGTTAAAATTGACAAGTAAGATACAAACAACAAA
CTTAAAGCaaaaaggcttaaaactcaatatTTGATTAAAACCTTAGCAAA
GGTAATCCTTACAGCTTAATTTTAACACCATAGGTACCTGGATTAATGAA
ATCTGCATTGAAAATTCTGTTGTCTCCAGAATCGGAACCTTCAGACATTC
AGAATTTTCTTCCTGAAAGACTTCTGgcaatcaaaaaagtttccGACGAT
GCCAAGGTTAAATGTGAAGAGGTCGTGAAAGAATTTACGCATGTTATTGA
AGTTATTGAAGAAGTTCAACTGGGTGCACTTGCCAAGCAGACCGATGTAA
AAACTGCTCTAGAGCATCTACAACTTAATATCGATAATGCTAAGCGAGAG
AGTGAACGCTTGGATCAGGTTACAAAAGCGAACGAAAAGGCATTAAAAGA
CATGGAAGGACAAGTCAAGAGTGCAAAGGAAGATTGGAAAGATGCAATGG
CTTCTATGCCAAGTGCTCAAGATTTGATGATGGCATCGCTGACTGAAAGC
TTGACAAGCATCGTTAAAACTGGAGCAAATGCTGCCGTTCAAATGGGAAC
CCAATATGCNAGCATCGTTAACACTGGAGCAAATGCTGCCATTCAAATGG
GAACCCAATATGTAAACATGATGACAATGAGCGCCATGGGCGGAATGGAT
GATATGCCTCCTCAACAAATGGGTGGTATGCAAAATCCTCAGCAAGCACC
AAATCAAAATGTGCAGTATCCAGCACAAGGCACACATGTAGAAAATCCTA
AGGTTGATTTCTTGCGAGATAAATACATGGTAAAGAACAGCCAAATCAAC
CTCTTCGCTAATCTATTGCTGAATTATTTTGACGACAGTGATGGTGATAT
CAAACTAAGAGAAAAAGTGGTTGAAAAAGGAGACAAAGATATACAAGTTG
GTAAAATCCTTGAAGCTGAAACCTTTTTTAATATGATGCAAAATAATATT
AAAGGTATGGACGCTGGAGAtcacaaaacaaccaaaaaccaACTACTGAG
ATTGATTGACAATGCCCTCAAAACAATTGAAGGAATCCAGAAGCTTCCTG
AAAGCGTTGCAACGATTCAAAAACTCTTCGATCAagcagaaaaaatcatt
tcacaATCAGACACGATCGAATCAAGTTTAAAAGTCAAAGCAGGAATCTC
TCAATTTTATAATCCAAATCCAACTCTACCACGATCACAGGCACCATCAG
GCAGCTATGGCAATCTCTCTCAAACCATGAATGATAATGCTCACAAAAAG
GTTGAAGCCTATCGCTCACAATTGGATTCTCTTCGAATTCGcgctgaaga
agaaaaacagcGGTTTAATGCATCACAGCAAGTTTTATCTGGAGAGATGA
GGAagttagaaaatttcaaaagtagAGATGCAACGAGTTTTCATATGATC
AAAGTCTTAATGCAAGAAAAGNGAGAGATGAGGAagttagaaaatttcaa
aagtagTGATGCAACGAGTCTTCATATGATCAAAGTCATAATGCAAGAAA
AGATTGCACTTACTCTAGTCAAAGAAAGCTGGGCTGACCTTGTTCAATTT
TTTACCTCAATGTCCAACTTAATCATTTCAACACTGGCTCCTTCATTGAA
TATGTTTGTTGCTGACTCAGAGAGAGTCGCTAAATCCAAATCAGTCAAGA
ACATGGCAACAGAGGTCGTATTTCAAACAGCTTATCAN Coding sequence (CDS) from alignment at scaffold_477:2605..6642+ >TCONS_00067863 ID=TCONS_00067863|Name=TCONS_00067863|organism=Clytia hemisphaerica|type=CDS|length=3924bp|location=Sequence derived from alignment at scaffold_477:2605..6642+ (Clytia hemisphaerica) AAAAGGTTTTCTCAAAACTCCTTTACTCGTTCTTTATTCAGGATGGCACA GGTTGACAAAGCCGTCACTGGTATTGTCTCGCAGCAAGATGAATTCTTAA CCATGATGCAACCCTTTGATCAAATGTCAGCTAAACTATCAGGTGCTCCA ATGGCTATCAATATTCTTGGTCAACTGTGTTATATCGCGACAGGAGTTGA AGTGGATTTGAGAGTTGAAGGAGTTAATGAGAAATACAAGCATTTAACTA ATACAAATTCATTGCGTGATTGTCTTATGCAAGTTTCACAAGCTGGGAAA AAAGCCTTTCGAACAGCCGATGGAAATATGGAATACATATCAATGAGCTG CGAAAGGGTACCTGGATTAATGAAATCTGCATTGAAAATTCTGTTGTCTC CAGAATCGGAACCTTCAGACATTCAGAATTTTCTTCCTGAAAGACTTCTG gcaatcaaaaaagtttccGACGATGCCAAGGTTAAATGTGAAGAGGTCGT GAAAGAATTTACGCATGTTATTGAAGTTATTGAAGAAGTTCAACTGGGTG CACTTGCCAAGCAGACCGATGTAAAAACTGCTCTAGAGCATCTACAACTT AATATCGATAATGCTAAGCGAGAGAGTGAACGCTTGGATCAGGTTACAAA AGCGAACGAAAAGGCATTAAAAGACATGGAAGGACAAGTCAAGAGTGCAA AGGAAGATTGGAAAGATGCAATGGCTTCTATGCCAAGTGCTCAAGATTTG ATGATGGCATCGCTGACTGAAAGCTTGACAAGCATCGTTAAAACTGGAGC AAATGCTGCCGTTCAAATGGGAACCCAATATGCNAGCATCGTTAACACTG GAGCAAATGCTGCCATTCAAATGGGAACCCAATATGTAAACATGATGACA ATGAGCGCCATGGGCGGAATGGATGATATGCCTCCTCAACAAATGGGTGG TATGCAAAATCCTCAGCAAGCACCAAATCAAAATGTGCAGTATCCAGCAC AAGGCACACATGTAGAAAATCCTAAGGTTGATTTCTTGCGAGATAAATAC ATGGTAAAGAACAGCCAAATCAACCTCTTCGCTAATCTATTGCTGAATTA TTTTGACGACAGTGATGGTGATATCAAACTAAGAGAAAAAGTGGTTGAAA AAGGAGACAAAGATATACAAGTTGGTAAAATCCTTGAAGCTGAAACCTTT TTTAATATGATGCAAAATAATATTAAAGGTATGGACGCTGGAGAtcacaa aacaaccaaaaaccaACTACTGAGATTGATTGACAATGCCCTCAAAACAA TTGAAGGAATCCAGAAGCTTCCTGAAAGCGTTGCAACGATTCAAAAACTC TTCGATCAagcagaaaaaatcatttcacaATCAGACACGATCGAATCAAG TTTAAAAGTCAAAGCAGGAATCTCTCAATTTTATAATCCAAATCCAACTC TACCACGATCACAGGCACCATCAGGCAGCTATGGCAATCTCTCTCAAACC ATGAATGATAATGCTCACAAAAAGGTTGAAGCCTATCGCTCACAATTGGA TTCTCTTCGAATTCGcgctgaagaagaaaaacagcGGTTTAATGCATCAC AGCAAGTTTTATCTGGAGAGATGAGGAagttagaaaatttcaaaagtagA GATGCAACGAGTTTTCATATGATCAAAGTCTTAATGCAAGAAAAGNGAGA GATGAGGAagttagaaaatttcaaaagtagTGATGCAACGAGTCTTCATA TGATCAAAGTCATAATGCAAGAAAAGATTGCACTTACTCTAGTCAAAGAA AGCTGGGCTGACCTTGTTCAATTTTTTACCTCAATGTCCAACTTAATCAT TTCAACACTGGCTCCTTCATTGAATATGTTTGTTGCTGACTCAGAGAGAG TCGCTAAATCCAAATCAGTCAAGAACATGGCAACAGAGGTCGTATTTCAA ACAGCTTATCANAAAAGGTTTTCTCAAAACTCCTTTACTCGTTCTTTATT CAGGATGGCACAGGTTGACAAAGCCGTCACTGGTATTGTCTCGCAGCAAG ATGAATTCTTAACCATGATGCAACCCTTTGATCAAATGTCAGCTAAACTA TCAGGTGCTCCAATGGCTATCAATATTCTTGGTCAACTGTGTTATATCGC GACAGGAGTTGAAGTGGATTTGAGAGTTGAAGGAGTTAATGAGAAATACA AGCATTTAACTAATACAAATTCATTGCGTGATTGTCTTATGCAAGTTTCA CAAGCTGGGAAAAAAGCCTTTCGAACAGCCGATGGAAATATGGAATACAT ATCAATGAGCTGCGAAAGGGTACCTGGATTAATGAAATCTGCATTGAAAA TTCTGTTGTCTCCAGAATCGGAACCTTCAGACATTCAGAATTTTCTTCCT GAAAGACTTCTGgcaatcaaaaaagtttccGACGATGCCAAGGTTAAATG TGAAGAGGTCGTGAAAGAATTTACGCATGTTATTGAAGTTATTGAAGAAG TTCAACTGGGTGCACTTGCCAAGCAGACCGATGTAAAAACTGCTCTAGAG CATCTACAACTTAATATCGATAATGCTAAGCGAGAGAGTGAACGCTTGGA TCAGGTTACAAAAGCGAACGAAAAGGCATTAAAAGACATGGAAGGACAAG TCAAGAGTGCAAAGGAAGATTGGAAAGATGCAATGGCTTCTATGCCAAGT GCTCAAGATTTGATGATGGCATCGCTGACTGAAAGCTTGACAAGCATCGT TAAAACTGGAGCAAATGCTGCCGTTCAAATGGGAACCCAATATGCNAGCA TCGTTAACACTGGAGCAAATGCTGCCATTCAAATGGGAACCCAATATGTA AACATGATGACAATGAGCGCCATGGGCGGAATGGATGATATGCCTCCTCA ACAAATGGGTGGTATGCAAAATCCTCAGCAAGCACCAAATCAAAATGTGC AGTATCCAGCACAAGGCACACATGTAGAAAATCCTAAGGTTGATTTCTTG CGAGATAAATACATGGTAAAGAACAGCCAAATCAACCTCTTCGCTAATCT ATTGCTGAATTATTTTGACGACAGTGATGGTGATATCAAACTAAGAGAAA AAGTGGTTGAAAAAGGAGACAAAGATATACAAGTTGGTAAAATCCTTGAA GCTGAAACCTTTTTTAATATGATGCAAAATAATATTAAAGGTATGGACGC TGGAGAtcacaaaacaaccaaaaaccaACTACTGAGATTGATTGACAATG CCCTCAAAACAATTGAAGGAATCCAGAAGCTTCCTGAAAGCGTTGCAACG ATTCAAAAACTCTTCGATCAagcagaaaaaatcatttcacaATCAGACAC GATCGAATCAAGTTTAAAAGTCAAAGCAGGAATCTCTCAATTTTATAATC CAAATCCAACTCTACCACGATCACAGGCACCATCAGGCAGCTATGGCAAT CTCTCTCAAACCATGAATGATAATGCTCACAAAAAGGTTGAAGCCTATCG CTCACAATTGGATTCTCTTCGAATTCGcgctgaagaagaaaaacagcGGT TTAATGCATCACAGCAAGTTTTATCTGGAGAGATGAGGAagttagaaaat ttcaaaagtagAGATGCAACGAGTTTTCATATGATCAAAGTCTTAATGCA AGAAAAGNGAGAGATGAGGAagttagaaaatttcaaaagtagTGATGCAA CGAGTCTTCATATGATCAAAGTCATAATGCAAGAAAAGATTGCACTTACT CTAGTCAAAGAAAGCTGGGCTGACCTTGTTCAATTTTTTACCTCAATGTC CAACTTAATCATTTCAACACTGGCTCCTTCATTGAATATGTTTGTTGCTG ACTCAGAGAGAGTCGCTAAATCCAAATCAGTCAAGAACATGGCAACAGAG GTCGTATTTCAAACAGCTTATCAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00067863-exon-scaffold_477-1491911889:2605..2962 | TCONS_00067863-exon-scaffold_477-1491911889:2605..2962 | Clytia hemisphaerica | exon |
TCONS_00067863-exon-scaffold_477-1510915933:2605..2962 | TCONS_00067863-exon-scaffold_477-1510915933:2605..2962 | Clytia hemisphaerica | exon |
TCONS_00067863-exon-scaffold_477-1575043694:2605..2962 | TCONS_00067863-exon-scaffold_477-1575043694:2605..2962 | Clytia hemisphaerica | exon |
TCONS_00067863-exon-scaffold_477-1491911889:5038..6642 | TCONS_00067863-exon-scaffold_477-1491911889:5038..6642 | Clytia hemisphaerica | exon |
TCONS_00067863-exon-scaffold_477-1510915933:5038..6642 | TCONS_00067863-exon-scaffold_477-1510915933:5038..6642 | Clytia hemisphaerica | exon |
TCONS_00067863-exon-scaffold_477-1575043694:5038..6642 | TCONS_00067863-exon-scaffold_477-1575043694:5038..6642 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_477 | supercontig | scaffold_477:2605..6642 + |
Blast
The following BLAST results are available for this feature:
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