TCONS_00067912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067912
Unique NameTCONS_00067912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067912 ID=TCONS_00067912|Name=TCONS_00067912|organism=Clytia hemisphaerica|type=transcript|length=385bp
TCCTATTCATGGCGGCTTTTCCGATTGGTCGTCATGGTCACAATGTGACG
TCACATGTGGTGGTGGCACCACACACCGCTCACGCCAGTGCAATAACCCA
ACACCACGATACGGTGGCAATGGTTGTATTGGATCTGTAGAAGAAGATGA
TACGTGCAATAATCATTTCTGTCCAGTGGATGCAGTTTGGTTAGAATGGT
CTGATTGGTCATTTTGTAACAAAGCATGCGGTAATGGTACTGGCATGAGA
ACGAGGCAATGTAAACATGGTATGTATGGTGGTAGAAGAGATTGTATTGG
GAATGGTGAAGAAGAATTTGAATGTAACACTCATACATGTCCACCTGTCT
GGGCGAACTTGGTGCTTAGATTTGACAGTGAATAT
Run BLAST on NCBI

transcript from alignment at scaffold_477:413403..415193-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067912 ID=TCONS_00067912|Name=TCONS_00067912|organism=Clytia hemisphaerica|type=transcript|length=1791bp|location=Sequence derived from alignment at scaffold_477:413403..415193- (Clytia hemisphaerica)
TCCTAGTAAGTAAAAGAAAGCTTTTCTATTTGGCCAGAAATGACGTAATT
CCCCACATCAGCCATAATAGAAAATAGAATACATAATTGTGGAACGGAAC
GATGTCCTATTAAGTGAAACAAAGATTTCCTATTGGTCAGAAATGACGTA
ATTCCCTACATCAGCCAATAGAATCCTCCCAATATAAGACCATTAAGACC
TACCTCATTCCATAAACGTTTTGATGGAAAAAAACAACCACCTCGTTTAT
ACTTTTAAAACGCAAGAGTCTGCAAATTTTGAGACTGACTTTCATTTTAC
TTTCCAAAACAATAATAATTTTATTATTTCATTTACAGTTCATGGCGGCT
TTTCCGATTGGTCGTCATGGTCACAATGTGACGTCACATGTGGTGGTGGC
ACCACACACCGCTCACGCCAGTGCAATAACCCAACACCACGATACGGTGG
CAATGGTTGTATTGGATCTGTAGAAGAAGATGATACGTGCAATAATCATT
TCTGTCCAGGTTTGTGTAATAATTGAACTCGGCTTTCTAGTTTTTTTACT
CAGAATTATACGATCATCTCGACTACACTAGGTCACCAAAAGGGAATAAT
TTAGGAGACCTAACTCTAACGACGCTTTGTTTTTTCCGTCTACCACCCTT
TACGGCTGTAAACGTCCCCCACATATATTTTCTCGCGTTTACTATCCCAG
AAGATAGCGTCGTCTAACTGAGCAACCATTCAATCACTGGTAAAAAGAAA
GGAAAGTTTTTGCTTAACCTCCCCATATTCAAACTTGTGGTTCAGCCCCT
AACATTAGTAAGTTTATGTATCAGTATTTTTCTGCGACGGAGACGGCCAG
CCTTTTCTATCTATCTAAATCCTGAATTGTATAAGGTACGAAACTCACCA
ATTTTCTCTCTATTTTATCTCTGAATTTAACATATAACTAAAATTAACTG
ACGCCCAATTCTATTTCAGTGGATGCAGTTTGGTTAGAATGGTCTGATTG
GTCATTTTGTAACAAAGCATGCGGTAATGGTACTGGCATGAGAACGAGGC
AATGTAAACATGGTATGTATGGTGGTAGAAGAGATTGTATTGGGAATGGT
GAAGAAGAATTTGAATGTAACACTCATACATGTCCACGTAAGATTTGATT
GAAAGGGATAACCAGATAAAAAAGTTAAATTCAACCAAAAGATTCCTTCC
ATAGACCTTAGCAGAACCTTCAAATTTTACTGGCTACTTGTTTTTCAAAG
TCAGAATATTTAGGCTAGTTATTTTCCGTTTCTTCTTGGAAACTTTTGGT
CTTACTAAGGACCATGGAAGGAATCTTTGAGATAAGTGTTACTTTTATCT
GGTTATGCCTTTAAAATACCATTGGGTGAGAGCTTCTAGTATCAAAGACA
AGAGGGGTTAGGAGTTAGGAGCAACTAAAATCATACAAGAGCGTTTTCAT
AACTGCGCAAGAATTCAAATCCATTTTCTCTACAAATATTTAATTAATTG
GTTAATTAGCAAAGACTTTTCTACATCTCACTCTTTCCCCTCAATGAAAA
CTTTTTCTTCAAGAAATGTGATTTTGATGGCCTTTGCTTTTAATATCCAC
CGGGTAACAATAAGTATTACTGAACTCACTATTGCATTTGCGCTTGCTAG
AAAGTATTCAACACTAAGCAAACAAGTTTTCGTATCTTTATTCAAATAAC
TTTCTTGTTTTCTGGATTTTTCGACCGTAAAACTTATTTCTTCTTTACAG
CTGTCTGGGCGAACTTGGTGCTTAGATTTGACAGTGAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042413XLOC_042413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067912-exon-scaffold_477-1575043694:415189..415193TCONS_00067912-exon-scaffold_477-1575043694:415189..415193Clytia hemisphaericaexon
TCONS_00067912-exon-scaffold_477-1575043694:414685..414855TCONS_00067912-exon-scaffold_477-1575043694:414685..414855Clytia hemisphaericaexon
TCONS_00067912-exon-scaffold_477-1575043694:414057..414224TCONS_00067912-exon-scaffold_477-1575043694:414057..414224Clytia hemisphaericaexon
TCONS_00067912-exon-scaffold_477-1575043694:413403..413443TCONS_00067912-exon-scaffold_477-1575043694:413403..413443Clytia hemisphaericaexon
TCONS_00067912-exon-scaffold_477-1510915933:415189..415193TCONS_00067912-exon-scaffold_477-1510915933:415189..415193Clytia hemisphaericaexon
TCONS_00067912-exon-scaffold_477-1510915933:414685..414855TCONS_00067912-exon-scaffold_477-1510915933:414685..414855Clytia hemisphaericaexon
TCONS_00067912-exon-scaffold_477-1510915933:414057..414224TCONS_00067912-exon-scaffold_477-1510915933:414057..414224Clytia hemisphaericaexon
TCONS_00067912-exon-scaffold_477-1510915933:413403..413443TCONS_00067912-exon-scaffold_477-1510915933:413403..413443Clytia hemisphaericaexon
TCONS_00067912-exon-scaffold_477-1491911889:415189..415193TCONS_00067912-exon-scaffold_477-1491911889:415189..415193Clytia hemisphaericaexon
TCONS_00067912-exon-scaffold_477-1491911889:414685..414855TCONS_00067912-exon-scaffold_477-1491911889:414685..414855Clytia hemisphaericaexon
TCONS_00067912-exon-scaffold_477-1491911889:414057..414224TCONS_00067912-exon-scaffold_477-1491911889:414057..414224Clytia hemisphaericaexon
TCONS_00067912-exon-scaffold_477-1491911889:413403..413443TCONS_00067912-exon-scaffold_477-1491911889:413403..413443Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:413403..415193 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.25916	0	0	0	0	0	0.416132	0	0.114463	0	0.453972	0	2.35196	1.92527	0	0	0.462251	0.210127	0.139944	0.772618	0	0	0	0.227952
Blast
[Close]
BLAST of TCONS_00067912 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 4.186e-28
Identity = 56/114 (49.12%), Postives = 62/114 (54.39%), Query Frame = 2 
Query:    5 IHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKH-GMYGGRRDCIGNGEEEFECNTHTCP 343
            +HGGFS WS+W  C VTCG G   RSR CN P P  GG  C GS  E   C N  CPVD  W EWS W  C ++CG G   RTR C +  +  G R C GN  E   CN   CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP 4641

HSP 2 Score: 96.2857 bits (238), Expect = 4.263e-23
Identity = 48/116 (41.38%), Postives = 65/116 (56.03%), Query Frame = 2 
Query:    2 PIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKHGM--YGGRRDCIGNGEEEFECNTHTCP 343
            P+HG +S W  W  C  +CG GT  R+R CNNP P +GG+ C G+  +   CN   CP+   W  W+ WS C+ +CG G   RTR C   +  YGGR+ C G+  +   CN+  CP
Sbjct: 4641 PVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRK-CEGSDVQSDFCNSDPCP 4755

HSP 3 Score: 93.9745 bits (232), Expect = 2.516e-22
Identity = 49/115 (42.61%), Postives = 63/115 (54.78%), Query Frame = 2 
Query:    2 PIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKH-GMYGGRRDCIGNGEEEFECNTHTCP 343
            PIHG ++ W+SWS C V+CGGG   R+R C++P P+YGG  C GS  + D CN+  CP    W  WS W  C++ C  G   R R C +     G R C G   +   CNT  CP
Sbjct: 4698 PIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812

HSP 4 Score: 93.5893 bits (231), Expect = 3.129e-22
Identity = 48/115 (41.74%), Postives = 56/115 (48.70%), Query Frame = 2 
Query:    2 PIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKHGM-YGGRRDCIGNGEEEFECNTHTCP 343
            P HG +S WS W  C  TC GG   R R C+NP P  GG  C G   +   CN   CPVD  W  W  WS C+ +CG G   R R C H +   G R C G+  +   CN   CP
Sbjct: 4755 PTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869

HSP 5 Score: 83.9593 bits (206), Expect = 5.677e-19
Identity = 45/116 (38.79%), Postives = 61/116 (52.59%), Query Frame = 2 
Query:    2 PIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKH--GMYGGRRDCIGNGEEEFECNTHTCP 343
            P+ G +S+WS W +C  +CG G   R+R CNNP+ ++GG  C G+  E   CN   CPV   W  W  W  C+++CG GT  R R C +    +GG   C G   +   CN   CP
Sbjct: 4584 PVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSY-CDGAETQMQVCNERNCP 4698
The following BLAST results are available for this feature:
BLAST of TCONS_00067912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN14.186e-2849.12Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
back to top