TCONS_00067914 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00067914
Unique Name	TCONS_00067914
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	885

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_477:413403..417902-

transcript sequence

>TCONS_00067914 ID=TCONS_00067914|Name=TCONS_00067914|organism=Clytia hemisphaerica|type=transcript|length=885bp
AAAACTTGTGGTACAGATCTCGTGGCGACTTATGAGACAACACAATGTCT
AGATATAAGTAATTGCTTTGAGAGTGGATATTACATGGGTGGTCAAGGAG
AATCATGTGATACTTTCTGCTCTTCAAGAGGTATGGTCTGTTCAACTGAA
ATAAAAACGGGGAATTCACCAACTATATTTCAAAGTGTTTTACCAAACTA
CAAGATGAGCACCAATCAACCAACGTGGAATAAACCTTACTCTCCCCATT
GCGATGAACAAAACCATTGTTATGGATATTCGAATGTACCAGACGAAGTA
TCGTGTGAAGTGGCACCGGTGGCTCAACAGCGCCGCTTTTGTCATTGCAT
GAATAGGGCTGACCTTGGATATGCAGACTGGGCGCCATGGTCACACTGTT
CACAAACGTGTGAAGGTGTAAAACGAAGAACGAGAGAATGTTTAGGATTG
CAATGCGATGGAGACAGTGAAGAAATGAATAATTGTGGAACGGAACGATG
TCCTATTCATGGCGGCTTTTCCGATTGGTCGTCATGGTCACAATGTGACG
TCACATGTGGTGGTGGCACCACACACCGCTCACGCCAGTGCAATAACCCA
ACACCACGATACGGTGGCAATGGTTGTATTGGATCTGTAGAAGAAGATGA
TACGTGCAATAATCATTTCTGTCCAGTGGATGCAGTTTGGTTAGAATGGT
CTGATTGGTCATTTTGTAACAAAGCATGCGGTAATGGTACTGGCATGAGA
ACGAGGCAATGTAAACATGGTATGTATGGTGGTAGAAGAGATTGTATTGG
GAATGGTGAAGAAGAATTTGAATGTAACACTCATACATGTCCACCTGTCT
GGGCGAACTTGGTGCTTAGATTTGACAGTGAATAT

Run BLAST on NCBI

transcript from alignment at scaffold_477:413403..417902-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00067914 ID=TCONS_00067914|Name=TCONS_00067914|organism=Clytia hemisphaerica|type=transcript|length=4500bp|location=Sequence derived from alignment at scaffold_477:413403..417902- (Clytia hemisphaerica)
AAAACTTGTGGTACAGATCTCGTGGCGACTTATGAGACAACACAATGTCT
AGATATAAGTAATTGCTTTGAGAGTGGATATTACATGGGTGGTCAAGGAG
AATCATGTGATACTTTCTGCTCTTCAAGAGGTAAAAATACTTATTTTGGA
TTAGCCAATGAATTGCAAGAGCTTTGTAAAGATGACAATGTCACTTGCAA
TTTGATTGGTCAAAAGGATCACAAATAAACCAATCAAACTCCCTTTATTT
GACGTAAATCCCTCATCTTTGAGACTTCTGGGTCATTCTTACATTAGAAA
TGGTGAAATCAATCTCTATCCTGAAAAGACAGAGACGAACATCGTCGCAA
GTGTCTTGGAATTATGTTAATATCCGGTTATCTTTAACCCAGCTGACACA
CAACGTTGTTTTTGAAAACGTCGAAAAAACGTTGTGTGCCAGCTGGGTAA
TCTAACATTCATCACATCAATGTTTCTTTAGGTATGGTCTGTTCAACTGA
AATAAAAACGGGGAATTCACCAACTATATTTCAAAGTGTTTTACCAAACT
ACAAGATGAGCACCAATCAACCAACGTGGAATAAACCTTACTCTCCCCAT
TGCGATGAACAAAACCATTGTTATGGATATTCGAATGTACCAGACGAAGT
ATCGTGTGAAGTGGCACCGGTGGCTCAACAGCGCCGCTTTTGTCATTGCA
TGAATAGGGGTAAGCAAAATTTCGATTTTCTTTAGCGCTAAAGCTTAGGC
GGGCAATAGCCTGTAAACAGCGACATAAAGTCAGTTATAAGTAAAGTCAG
ACATCTAGCTCAATTTCTTCTAATCATGTTTCCAAGGCAGGGATCTTGAC
CAGACAGCTTCTCTTTTAAAAAAACTAATTTACTAGAGATTGTACATTTT
ATGTTAAGGTAATAATTTCCACCATTATGGGAAAAACAATCTTTGAAGGA
CAAATGACAGGTTATCCTCCGTAAAGTTGGATATCATCTAAGCATCATCA
AAGATTTCATCATCAATGAAAGTAAAAGAATCAAAGAAATGTGCAAAAAA
TGATGATTTCATTTGGCGTGTGAGAGAAAGTCCCAGAACAGATAACCTTC
ACTTGATAAAAGCAAACAAAAACTTTGCTAACCAAAACCTGTCAATAATT
AGCCTCAGTAAGCGACGATGAGCTGCCAACAAAACATTAGCTTTTCTTTT
TAATTGTAAAGTAGCGTTGAATTTTATCAGCCTTTGTTGCTGCCTTTTCG
TCAACTTAAAATAACCCAGCTGGCACACAACGTTTTTTTGACGTTTATGT
AACGTTCACAACGTCCGTATAACGTTAGATGAACGTTGAAACAACGTTTT
GTGCCAACTGGGAAACTATTACATACATACATAAAGACGGAAACCGTGCA
ACCTCTTTGATAAAATATTATTTTTCACAGCTGACCTTGGATATGNTTGA
AAACGTCGAAAAAACGTTGTGTGCCAGCTGGGTAATCTAACATTCATCAC
ATCAATGTTTCTTTAGGTATGGTCTGTTCAACTGAAATAAAAACGGGGAA
TTCACCAACTATATTTCAAAGTGTTTTACCAAACTACAAGATGAGCACCA
ATCAACCAACGTGGAATAAACCTTACTCTCCCCATTGCGATGAACAAAAC
CATTGTTATGGATATTCGAATGTACCAGACGAAGTATCGTGTGAAGTGGC
ACCGGTGGCTCAACAGCGCCGCTTTTGTCATTGCATGAATAGGGGTAAGC
AAAATTTCGATTTTCTTTAGCGCTAAAGCTTAGGCGGGCAATAGCCTGTA
AACAGCGACATAAAGTCAGTTATAAGTAAAGTCAGACATCTAGCTCAATT
TCTTCTAATCATGTTTCCAAGGCAGGGATCTTGACCAGACAGCTTCTCTT
TTAAAAAAACTAATTTACTAGAGATTGTACATTTTATGTTAAGGTAATAA
TTTCCACCATTATGGGAAAAACAATCTTTGAAGGACAAATGACAGGTTAT
CCTCCGTAAAGTTGGATATCATCTAAGCATCATCAAAGATTTCATCATCA
ATGAAAGTAAAAGAATCAAAGAAATGTGCAAAAAATGATGATTTCATTTG
GCGTGTGAGAGAAAGTCCCAGAACAGATAACCTTCACTTGATAAAAGCAA
ACAAAAACTTTGCTAACCAAAACCTGTCAATAATTAGCCTCAGTAAGCGA
CGATGAGCTGCCAACAAAACATTAGCTTTTCTTTTTAATTGTAAAGTAGC
GTTGAATTTTATCAGCCTTTGTTGCTGCCTTTTCGTCAACTTAAAATAAC
CCAGCTGGCACACAACGTTTTTTTGACGTTTATGTAACGTTCACAACGTC
CGTATAACGTTAGATGAACGTTGAAACAACGTTTTGTGCCAACTGGGAAA
CTATTACATACATACATAAAGACGGAAACCGTGCAACCTCTTTGATAAAA
TATTATTTTTCACAGCTGACCTTGGATATGCAGACTGGGCGCCATGGTCA
CACTGTTCACAAACGTGTGAAGGTGTAAAACGAAGAACGAGAGAATGTTT
AGGATTGCAATGCGATGGAGACAGTGAAGAAATGAATAATTGTGGAACGG
AACGATGTCCTAGTAAGTGAAACAAAGCTTTTCTATTGGCCAGAAATGAC
GTAATTCCCCACATCAGCCAATAGAAAATAGAGATACATAATTGTGGAAC
GGAACGATGTCCTAGTAAGTAAAAGAAAGCTTTTCTATTTGGCCAGAAAT
GACGTAATTCCCCACATCAGCCATAATAGAAAATAGAATACATAATTGTG
GAACGGAACGATGTCCTATTAAGTGAAACAAAGATTTCCTATTGGTCAGA
AATGACGTAATTCCCTACATCAGCCAATAGAATCCTCCCAATATAAGACC
ATTAAGACCTACCTCATTCCATAAACGTTTTGATGGAAAAAAACAACCAC
CTCGTTTATACTTTTAAAACGCAAGAGTCTGCAAATTTTGAGACTGACTT
TCATTTTACTTTCCAAAACAATAATAATTTTATTATTTCATTTACAGTTC
ATGGCGGCTTTTCCGATTGGTCGTCATGGTCACAATGTGACGTCACATGT
GGTGGTGGCACCACACACCGCTCACGCCAGTGCAATAACCCAACACCACG
ATACGGTGGCAATGGTTGTATTGGATCTGTAGAAGAAGATGATACGTGCA
ATAATCATTTCTGTCCAGGTTTGTGTAATAATTGAACTCGGCTTTCTAGT
TTTTTTACTCAGAATTATACGATCATCTCGACTACACTAGGTCACCAAAA
GGGAATAATTTAGGAGACCTAACTCTAACGACGCTTTGTTTTTTCCGTCT
ACCACCCTTTACGGCTGTAAACGTCCCCCACATATATTTTCTCGCGTTTA
CTATCCCAGAAGATAGCGTCGTCTAACTGAGCAACCATTCAATCACTGGT
AAAAAGAAAGGAAAGTTTTTGCTTAACCTCCCCATATTCAAACTTGTGGT
TCAGCCCCTAACATTAGTAAGTTTATGTATCAGTATTTTTCTGCGACGGA
GACGGCCAGCCTTTTCTATCTATCTAAATCCTGAATTGTATAAGGTACGA
AACTCACCAATTTTCTCTCTATTTTATCTCTGAATTTAACATATAACTAA
AATTAACTGACGCCCAATTCTATTTCAGTGGATGCAGTTTGGTTAGAATG
GTCTGATTGGTCATTTTGTAACAAAGCATGCGGTAATGGTACTGGCATGA
GAACGAGGCAATGTAAACATGGTATGTATGGTGGTAGAAGAGATTGTATT
GGGAATGGTGAAGAAGAATTTGAATGTAACACTCATACATGTCCACGTAA
GATTTGATTGAAAGGGATAACCAGATAAAAAAGTTAAATTCAACCAAAAG
ATTCCTTCCATAGACCTTAGCAGAACCTTCAAATTTTACTGGCTACTTGT
TTTTCAAAGTCAGAATATTTAGGCTAGTTATTTTCCGTTTCTTCTTGGAA
ACTTTTGGTCTTACTAAGGACCATGGAAGGAATCTTTGAGATAAGTGTTA
CTTTTATCTGGTTATGCCTTTAAAATACCATTGGGTGAGAGCTTCTAGTA
TCAAAGACAAGAGGGGTTAGGAGTTAGGAGCAACTAAAATCATACAAGAG
CGTTTTCATAACTGCGCAAGAATTCAAATCCATTTTCTCTACAAATATTT
AATTAATTGGTTAATTAGCAAAGACTTTTCTACATCTCACTCTTTCCCCT
CAATGAAAACTTTTTCTTCAAGAAATGTGATTTTGATGGCCTTTGCTTTT
AATATCCACCGGGTAACAATAAGTATTACTGAACTCACTATTGCATTTGC
GCTTGCTAGAAAGTATTCAACACTAAGCAAACAAGTTTTCGTATCTTTAT
TCAAATAACTTTCTTGTTTTCTGGATTTTTCGACCGTAAAACTTATTTCT
TCTTTACAGCTGTCTGGGCGAACTTGGTGCTTAGATTTGACAGTGAATAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042413	XLOC_042413	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_477	supercontig	scaffold_477:413403..417902 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.000589032	0.0010054	0	0	0	0	0	0.00026507	0	0	0	1.13257	0.0084383	0	0	0	0	1.3954	0.890818	0	0	0	0	0.000781623	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00067914 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.364e-29
Identity = 66/168 (39.29%), Postives = 87/168 (51.79%), Query Frame = 1

Query:  367 GYADWAPWSHCSQTC-EGVKRRTRECL-------GLQCDGDSEEMNNCGTERCPIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKH-GMYGGRRDCIGNGEEEFECNTHTCP 843
             ++ W PW  CS++C +G + R R C        G  CDG   +M  C    CPIHG ++ W+SWS C V+CGGG   R+R C++P P+YGG  C GS  + D CN+  CP    W  WS W  C++ C  G   R R C +     G R C G   +   CNT  CP
Sbjct: 4645 AWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812

HSP 2 Score: 120.939 bits (302), Expect = 1.389e-29
Identity = 66/167 (39.52%), Postives = 84/167 (50.30%), Query Frame = 1

Query:  370 YADWAPWSHCSQTCEG-VKRRTRECL-------GLQCDGDSEEMNNCGTERCPIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKHGM-YGGRRDCIGNGEEEFECNTHTCP 843
            +A WA WS CS +C G  ++RTR C        G +C+G   + + C ++ CP HG +S WS W  C  TC GG   R R C+NP P  GG  C G   +   CN   CPVD  W  W  WS C+ +CG G   R R C H +   G R C G+  +   CN   CP
Sbjct: 4703 WATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869

HSP 3 Score: 120.553 bits (301), Expect = 1.815e-29
Identity = 66/180 (36.67%), Postives = 97/180 (53.89%), Query Frame = 1

Query:  343 HCMNR---ADLGYADWAPWSHCSQTC-EGVKRRTRECL-------GLQCDGDSEEMNNCGTERCPIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKHGM--YGGRRDCIGNGEEEFECNTHTCP 843
            +C N+    D  +++W+ W  C+++C  G + RTR C        G  C+G++ E+  C    CP+HG +S W  W  C  +CG GT  R+R CNNP P +GG+ C G+  +   CN   CP+   W  W+ WS C+ +CG G   RTR C   +  YGGR+ C G+  +   CN+  CP
Sbjct: 4577 NCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRK-CEGSDVQSDFCNSDPCP 4755

HSP 4 Score: 116.701 bits (291), Expect = 3.307e-28
Identity = 64/169 (37.87%), Postives = 89/169 (52.66%), Query Frame = 1

Query:  367 GYADWAPWSHCSQTC-EGVKRRTRECL-------GLQCDGDSEEMNNCGTERCPIHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKH--GMYGGRRDCIGNGEEEFECNTHTCP 843
            G++ W+ W  CS TC +G+++R+R C        G  C G   EM NC  + CP+ G +S+WS W +C  +CG G   R+R CNNP+ ++GG  C G+  E   CN   CPV   W  W  W  C+++CG GT  R R C +    +GG   C G   +   CN   CP
Sbjct: 4531 GFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSY-CDGAETQMQVCNERNCP 4698

HSP 5 Score: 111.694 bits (278), Expect = 1.544e-26
Identity = 56/114 (49.12%), Postives = 62/114 (54.39%), Query Frame = 1

Query:  505 IHGGFSDWSSWSQCDVTCGGGTTHRSRQCNNPTPRYGGNGCIGSVEEDDTCNNHFCPVDAVWLEWSDWSFCNKACGNGTGMRTRQCKH-GMYGGRRDCIGNGEEEFECNTHTCP 843
            +HGGFS WS+W  C VTCG G   RSR CN P P  GG  C GS  E   C N  CPVD  W EWS W  C ++CG G   RTR C +  +  G R C GN  E   CN   CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP 4641

The following BLAST results are available for this feature:

BLAST of TCONS_00067914 vs. Swiss-Prot (Human)

BLAST of TCONS_00067914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HMCN1	1.364e-29	39.29	Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2	[more]

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TCONS_00067914 (transcript) - C. hemisphaerica