TCONS_00068024 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00068024
Unique Name	TCONS_00068024
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2136

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_478:631447..643350+

transcript sequence

>TCONS_00068024 ID=TCONS_00068024|Name=TCONS_00068024|organism=Clytia hemisphaerica|type=transcript|length=2136bp
gaTATATCATATGATTTTCTAGGAATGATAATAATTTAGTTACAATTATG
GCAGAAACAGTGACTACATCAACCTGGATTCAATCAATATCAATGATTAT
CATCGAGGGTGCAGATTATGTTGAATCAACATTACATgtACCTTTCTTTC
ACTTCATCTTAGAGGTCTTATTGGTACTGTGGATCGTTCGGCTTTTGACT
GGGAAAAGCTATAATCCAAAAGAGACTAAATTGGAACTGACAAAAGAGGA
AGAAGAGAAGTTGATAGCAGACTGGGAACCAGAACCTTTGGTCCCTGCAG
ATTCCAAAATTCCTGAATACGTCACCAAACCAAGACTAGTCAAAGGAAAG
CCAAGCTATAGGATCAACATTAATGGTAATGACTGTCTGAACTTGTGCAC
CATGAATTTCCTTGGCTTTGTTGGAAATGAAGAAGTGGAGAAAGCTGCAA
TCACAACTTTAAGAAATTATGGCGTTGGTTCTTGTGGTCCAAGAGGATTT
TATGGAACTGTTGATGTCCACCTTGACCTTGAGAAGAAGATTGCAGAATA
TTTGGGGACCGAGGAAGCCATCTTGTATTCATATGGGTTCTCCACCATCT
CAAGCGCCATTCCAGCATATTCCAAGAGAACTGATGTTATATTCTGTGAT
AAAGGCGTGAACTTTGCCATTCAAAAAGGTATCAGTGCATCACGAAGCAA
AGTATATTGGTTTGACCACAATGATATGGAAgatcttgaaagaaaaatga
aggaaCAACAAGAAAAGGATAAAAAAAATCCTAAGAAGGCGGTTGTGACG
CGAAGATTTTTGGTGATTGAAGGGTTATACATCAACACTGGAGATATTGC
ATCACTACCCAAAATTATTGAGTTGAAGAACAAATATAAAGTTCGTGTTT
TTATCGACGAGAGCTATTCTTTTGGTGTTCTTGGAAAGAGAGGCTGCGGT
GTTACAGATCATTATGACATACCTCTTGACCAGATTGATTTGATGGCTGT
ATCCCTTGAATTTTCACTTGGAAGTGTTGGTGGTTTCTGTGCTGGACCAT
CCTTTGTTATTGATCACCAACGCTTATCTGGTCAAGGATACTGCTTCTCA
GCGTCACTTCCTCCACTCCTTGCCGTGGCATCGCAAACTGGTATTGAACT
GATGGAAAAAGATAGCTcTATGTTCAAGAAACTGGAAAACAACTGcaaat
atttcagaaaacaGATTGAAggAATCAAAGGATTTGATATACAAGGTGAT
GAAGTGTCTCCAATCGTTCACCTTTATTTGAAAGACACCGAAGAATTATC
CAGGGAGGACATCGAAACCAAATTAAGCCAATATGTTGATAAATGTCAAG
AAAAAGGCGTAGGACTAACAAGTTCTCGTTATTTGAATGATTTAGAATTA
TATTTACCCCCTGCCAGCATAAGAATATCATTGAATTCTAAACTAGTCGA
AGATGACATGGACAATTCAACTAATATCATGAAAGAAATTGCTAATGAAA
TGTTTTAAAGAAGTCAAGGAGAATTGCATAATTGTATAATttataaacaa
atgattttatgATTGATAAGGTTGAAAGCACGCAGTGTATAAGCCCTAGT
TTAGACgaccgactttctgccctgcctattctattTGGCAAAAAGTGACC
AGAAAGTTGGCAGTTTaaatatttgtttaaaaaagattgaagaagtCATT
GTATCGACATCAAACGGGGTCAATGCAtcgactttagacagccaactttc
TGTCCACTTTAACTTACAATCGAATAGACAGGGTGAAAAGTGGGCCGTTT
AAAGCTAATTCACTTAAATTAACCTTGAAGTTCAAATGATACGTTTCAAA
AGATTTCCTTTTCATCAACAATGGAAACTAAAGACAATTGTGATCGTCAC
ACATCAATTTACCGTCAAGTTCCTTCGTCGCCGTCAATTGTACCTGACTA
ACTCGTTGATCAGGCATTATGGAAAATTGCAATAATTACAGAATTATTAA
TCTCGTTATAATAGATAGTTTTTTGGCGTTCCGGAgtatatattattttt
attattcaattttatatccaaaattatttacaaaaattgacCTTTCTTAT
CGATGCCTTTTTCGATATCATACCTTAAGAGTAAAA

Run BLAST on NCBI

transcript from alignment at scaffold_478:631447..643350+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00068024 ID=TCONS_00068024|Name=TCONS_00068024|organism=Clytia hemisphaerica|type=transcript|length=11904bp|location=Sequence derived from alignment at scaffold_478:631447..643350+ (Clytia hemisphaerica)
gaTATATCATATGATTTTCTAGGAATGATAATAATTTAGTTACAATTATG
GCAGAAACAGTGACTACATCAACCTGGATTCAATCAATATCAATGATTAT
CATCGAGGGTGCAGATTATGTTGAATCAACATTACATGTAagatttaagt
tttttttctatttagttttcttttcaatgttGATTTAATTTTCTGCCATT
TTCTTTCAGGCTTTAATAAATCTTGAGGCTATTTCGTTTGGAATGATGAG
TTGTTATTTCTTGGAATGCATCCTTTCCTCCAGAAATACACAGGGCTAAA
GAATTCAATTCTAGTTTGAAATGGATTTCTAtttcattataaaaaggaat
aGGACGCATTATttatatatttcttttattttataggtACCTTTCTTTCA
CTTCATCTTAGAGGTCTTATTGGTACTGTGGATCGTTCGGCTTTTGACTG
GGAAAAGCTATAATCCAAAAGAGACTAAATTGGAACTGACAAAAGAGGTA
AAGTAGTTTTCAAATGAGTAGCTTAAGGTTTGTTAATCTGATCTGAGCAG
TAAGTAAATGAAGCTGAGAGTTCTTGTGGAGAATCAAGAGGAAAATGATT
TATGAGACGAGATCAAACGTCAGACAGAGAAACTTGAATGACTAAAAGAT
TCAAGAAGTCATTCATCTCGCTCCGCCATTCCGCCATTCGCTACTCAAAA
CGCCATTTCCTCAGGGGAAAACCGCGCTcagtcaaattttttaaatgaca
atATGTCTACTTTGCTTCACTGTCTGCTACTTGCTTCTGCTCCGCTCGCT
TCTCAACATGACAATCCCAGGTCTATCAATCATGAATAAAATAGAAAAGT
GGATCAGATGAGATCTATGATGATTAATTTGCCATGTGGGTCATTAATTC
TGATCATACCATTTCATGTAGGTACAATATTCAATCTTTGTTCGCCATTG
TCAATGTGTTTAAGCTAATGTAATAATTTTGTAGTAAATACAAACAAAGC
CAATCTATACAAAGATGTTTGCTGATCTTGTAAATGCAATGCaagatatt
tcttttttctatcaGAAATCTAGACCATTcgttttaattctttttcaatt
aaGATTTGATTTGGATCTTGATTTGAATATCGTTTTATACGTCTAGCTTT
AAaaggaaaaacactttttcaGGAAGAAGAGAAGTTGATAGCAGACTGGG
AACCAGAACCTTTGGTCCCTGCAGATTCCAAAATTCCTGAATACGTCACC
AAACCAAGACTAGTCAAAGGGTatttcattttgtcatttttattttatca
tttttattgatGCTTCAAGTTCTTTGGCGTTGCTATTAAAACCATGACTT
TTGCAGTTTATTTCTTTTAGATTCACATGATGCTATTATCTGTTGCTTTt
gataagaaaaagaaaagaaataactAGAAAAAATTTCTATCCAAACCAAG
GCACCTTATAGAGGGATTGAATTTGAAACtatgtcattttttattttgac
ctcTTCTCGCAAAAGGTATATTGATTTATTCAAATATTCAATACGTTCTT
GACTTTTAGAAAGCCAAGCTATAGGATCAACATTAATGGTAATGACTGTC
TGAACTTGTGCACCATGAATTTCCTTGGCTTTGTTGGAAATGAAGAAGTG
GAGGTAAGGCTAACTCTTCAAATTCTCTTCAAATTCGAACATTATCAGGC
TAGTTCAAGAAAAAGTTTATACCCGCTATGTTGAGGAGGCCTTTTTGGGG
AAAGacgaccccctggattttttctcaatttttataAGGACCCACCCTGA
AACTTTTGCACTCTAAAAGCAAGACCCctgcaattttttattttctggac
CACCCTGGACCTCTCGCGTACTAAACTTAGGGGGGACAGACTATGTCTGG
AATAGCTAATTTATAACATAACTCATCTCAAAGCAATCATATATCATTGT
ATGAATCTTCCCTATCAAAAATAGCATTATTAAATTCGAatttgaatatt
gaaaaaaaactgtttagtcttttcagaaaaaagaaatttgaataatagta
cttttttaacaaaatgatCTTATTTTATATTTAAGAAAGCTGCAATCACA
ACTTTAAGAAATTATGGCGTTGGTTCTTGTGGTCCAAGAGGATTTTATGG
AACTGTTGGTAAATAAAGTTTCATGATTTATCTGCTATTATTAACCagtt
actttttcaaagcgggctacacggctttttgtgcaatgcaattggttctt
tttgcaTGACGACGTGTCTACACTGCACaaagttgcccgtcgttaggaaa
attcattgtgacatTTATTATGAAAGTATGATTAAAACAGATTATTAAAA
GAATAGTATTTTAAGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAgagatta
aaataaaaaatcatcttttaGATGTCCACCTTGACCTTGAGAAGAAGATT
GCAGAATATTTGGGGACCGAGGAAGCCATCTTGTATTCATATGGGTTCTC
CACCATCTCAAGCGCCATTCCAGCATATTCCAAGAGAACTGATGTTATAT
TCTGGTATAGACATAGattgttttaaatttgttaCTTTTGTTGGTTATTT
TTCATCATATTCAAGGTTCTCccaaaatttcaagaacatGACCTGATTTG
TTGTATAAATTCCATCCTctgttttggacaaaaaatatATCCATGACAAC
TGTATATTTGATGTGTTATTCTAAAACCCTTGATTTTTCCTTGCTTTAGT
GATAAAGGCGTGAACTTTGCCATTCAAAAAGGTATCAGTGCATCACGAAG
CAAAGTATATTGGTTTGACCACAATGATATGGAAgatcttgaaagaaaaa
tgaaggaaCAACAAGAAAAGGATAAAAAAGTAATTACTATCCCTCTAGCT
GTATGTTTGTTTGTACATGAAAGTCGTCTAGGACGAGGTTGGTATAGCTA
GTCTTTTTTATTAAAGAGAAATCACCACCTCAATCAGAAAGTTATTGATG
AATGCCTTTTTCTGAAAGTATTACACCACAAAGAGCAGTGCTATCCAAAA
AGCACTGTACCagaaaacttgaaaattaaaaaaaagcgcCACAGTGCTAT
TTGAGGAAATTATATTATATGGTGATTAAAAATTAAAGATTCCCTGCCAA
atttgtcaaatattttttttagaagTACAGAATTAGAATAGATAATTGAA
ACTCCTGAgaaagaaattccaaaatttacgTCAAGGTGGCATCTGGAAAG
TCTGAGATATAAAATTTGATTACACCCCTTTGTTGTTTAGATTAGAGACT
TTTTCACTTATAGATTGGTCATTCTTTATAATATTACTTCTTGATTTTTA
CTTAATTAGAATCCTAAGAAGGCGGTTGTGACGCGAAGATTTTTGGTGAT
TGAAGGGTTATACATCAACACTGGAGATATTGCATCACTACCCAAAATTG
TaagaatttttatcaaattaaatCAAATTCGGCGGCctctttattcaaat
tttctgcATAAACAAGATAATATCTATTATTTTTTGCGCTAAAAGAGATT
CTTTGCGAGGGCAATTTtacattaattttattttattttcattattcatg
atgttgtATTGGAATGGGGTTTCACATTAAAAGAAAGCTTTTCATtcttt
attatattatattatcttTACTATATTGTCAAGCAATTATATTGAcgata
tattgctgagtgccgGCAATATATGGAAAGATGTTCGCAATATATAGCCA
GCTCGATTTGTAATATTCCAAAAATATAGGGTAACTGTTTactgaaagaa
aattccttttgataatagagtaccagttgtttacatcgtacattacggtc
cgcaagcCATATtatcgaatattgttcgtcaatatattgtgtagtccgAG
TAGCCCTTAATggcaataaaattgaaatttttctgtaAATCTGTCACAAA
TAATtgaattaaagaattttttttcacggTTTATGGATATTTGAAGTTAT
GTGTAActatttaatatttttccagGGCTGTATGTCTGAGAAACATTGCA
GAATGCAAATATTATGCCACTTTAAAGGCAGCCTTTATGTTTTAAATCGA
TTGTGTCAATCaaagaaaagattgcatcatgaaaataAGAATTCAAATCC
CTTTATCATTTTTGTGTAGCTAGGTCTATAAATGTTGAAACAATCTTTTT
TTCAGATTGAGTTGAAGAACAAATATAAAGTTCGTGTTTTTATCGACGAG
AGCTATTCTTTTGGTGTTCTTGGAAAGAGAGGCTGCGGTGTTACAGATCA
TTATGACATACCTGTAAGTTTTTACTGAATTTTACCAAGGTCTTATTCAG
GTTCAAGGCACATATAAAAATTACGATTCAGAATCACTCGATTTTTAGAA
AGCCAAGCTATATTTGAAAAGTTTCATTACAAAAATTTGGCTCAGAAGGA
CAAGGATGATAGTGTCAGTTGGATGAAGGCAAGCAAACACTCGTCTTAGA
ACAGCCTGATTGTTAAAGTTGGATTATCTATCAATCACCAAGAGCTGTTT
ATTTATTCGCTTAACTCTAAAGACTCAAAGCATTTTCTCTTTTCTATATA
GCTTGACCAGATTGATTTGATGGCTGTATCCCTTGAATTTTCACTTGGAA
GTGTTGGTGGTTTCTGTGCTGGACCATCCTTTGTTATTGATCACCAACGC
TTATCTGGTCAAGGATACTGCTTCTCAGCGTCACTTCCTCCACTCCTTGC
CGTGGCATCGCAAACTGGTATTGAACTGATGGAAAAAGATAGCTGtatgt
tgtatttttttttaacagtaaactgtctctaattcgaacttctgtaattc
gaactataaCATTTGCCTCTCAACTGGAAAATGTTATATAATTCTCTCTG
GCATTCAAATCCTNGAACTATAACATTTGCCTCTCAACTGGAAAATGTTA
TATAATTCTATCTGGCATTCAAATCCTTCTCTAACCTGAAAAAGATTCTC
TctcccttgaaaattgaattagagtATTTCCATCcttcatcttttcaatc
ttagaaatgtttttttttgcttaaaagaaGCTTTATTAACTAGACATATA
TACTTTGATCATACTAATAATGCGATCATTAAGCTAAATCAGCGGTGTGA
AATTGATTATTTGAGGGACGATGGCAAGGTGGTTAAGGTGTCCGCGTCTC
AAATCAGGGATTCCTGTTTCGAATGTAAATTGATGATATTTATACTGCAA
TgcttctttttccttttcagcTATGTTCAAGAAACTGGAAAACAACTGca
aatatttcagaaaacaGATTGAAgggtttgaatttttgataattttttat
ctttaattGTTACTTGTATCATTGGAATTACTTTTAAtcaatagcggtgc
tttgtgtgtctgtgtgtcatcacttttgttttcgctttgtttgtgtttta
aaattatgacttttagtctcttgctccacaaatttgttctattggattcg
cgccatttgcaaaagatcggatagagcttggtttagactttattcagcct
ttgttttgaaatttaaggcccatctacatttagtaattttaatttctccc
ggacttgcctttttctctcttcttttgttttaaatgttttcgaatgtatt
taacgatcgtattcattaatgacattcgaattcttttcaaaacaaaacga
tttcatttcatagaaaagaatatttcaaaagtaaatcaaaacataaaaat
aaaaaaagtttgtggacaacaacagcattcaaagggcgatataaagcata
agaaaaaattggttcacttctttcttcttataaaaatattcaagtcgtcg
ttactgttaaaaagtgtgtacgtcattatttttttaatgtttaattcgaa
aagttatgacaatggtttaaaaaagcaatttagaattgcCTTATTTTTTT
CGATCTGATAAAGACAAAGAGTTACACTATTCGTTGTGACCCTCCCACCT
TTTCCTGAAAAtacctgcagagtcgtttcaaacgacactggtacaTTAAA
CGATGCTCTtcctgataacttttgacttaaacaaaaaattatgtcacggG
AGGACAGTacacgatccaaatatggttaaaagataagacacccggggAAG
GTTAGAATTAAACGTTAAAGAGCAGCCGCCGgaggatttttttgaaatat
ctgttcttttttttccaggagagtaaattttatggataaatcttggagag
actttcctcaaaacacccaggtaaaatccaggggtcgccttaaagacatc
tgttcttaaaatccaggagcacattttaaggaaaaacacatacaattttt
cagcggacaatctgttcaaaaaatccaggagctaaattgtgaaaagcaca
accagatgccagatttttttttccagggagcttcataattttccttaaaa
ggactcattttctaggagcattttaactttctaGAGAAaagatatacatt
ttccaggatTCCCATTTTTCcccagaacagatgatataatccaggagagc
ataggatacagaacagatagtcttttccaggagaaagggacctcaagaac
agatagttcatacttcctagccggtggctgctcttgtagagatttctttt
ttttattgattgtttttttaagccagcttcaacatgcgcacttttagtgc
gttcagctacagcttaaccggcgtgcgacgccgggtaccggctagttact
TTTGATTAAATAGcatcttcaaattttttgattgttCTTCTTTAGTATCA
GATTCTTCACTTCATTCCAATTCACCTACCTGTAATTAAAAACTTCTAAG
TTATATACAGTCAGCTCTATAATGAAAATTGTCTTAGAATTCTAACCAAA
ACATAGATAGAAAGTAGTGCAAAATGCGctctataattcaaatttaattt
gaagatcgaattagagagagagagaactATTATATCATCTTCTTTCGATC
GAAATCCTTTTTCAGTACTAGACAGTATTTGTTTGACAATGATTAATGGA
CAATCTCAAATCAATGTCGcctaagaaaaagttaatttttttgaggaaaa
agtggaatatttaCATAATTGGCCatataatcttcattttttatctaaaa
aggttgaaattttgagggTTGGTCATAATTGATAGCTTAtacccaaaaat
gaaaaaaaaacttgaaaaaggttTGTTATTTGAGGTTAATATGACAATTT
ATAGACTTTTGTTAACCTCAAAATATAGAGACGTCTATTGAAtaatcggg
gaaaaaattaGGGAGTCATCAAAAAGGCTTCAAATATCAAGCTTGTCTAA
AAAAGGTTAGAGATTTCCCACAAGAAAGGTGCAATTCATGAGGTTAAAAA
ATGGTAACAAGTAACCTCACATTCTTAACCATATCTTCTGTTAGCCAGTG
TATTAAGTTATGGGACAAAAGTAAAATGATACTAGAAGCTTAGATCGATA
GGGTTTTTATGAAATAGACAATCTTTGCTCTAACGTAGGGTTAAAAATTG
AGGTTATAATTAAAACTCTATGTTAAGGAAATGTGAGAAATTTGCTTTTC
TAATTGATCTAAATAGTTCTATTAAAGCtacaggaaaaaaattacttttt
aaaagttttcataaagtaaCTAAGCTAAAAAAATGTGAAATAGAACAAAA
AGGTTCTTAAAATGAGGTTAAACAACCTGAAAAAGTAGGATGTTTTAGCT
TATACCTTCAAACTTAATTAGTTTTGTCAAAAAACAACTTAACGAAAAAC
ATCTAAGGGATACTACGATAAAAAGTAAAcctcaaaaatttttaattcag
aCTTAATTAAGActtaatttttacttttaagCGTAGTATTGATATCAAAA
ACAGATTTATAAGTCATTAATAAAGTATAcaacaaagaattaaaaaaccc
TATAAGCCCAATTCACAAATAACCTCACTTTTGGTACCCAAACTAAGATA
TTAACCtcatttttttctatctaaCCTTGTTCCTCAACCATTGAATAATG
GATCCCACTATTTCTATTACACAACTTTGCCTTTCTATGCAGGATATGTG
AGAACTTAAAATCAACCCCTTTCGCAGGTACTTGTGTCTCTCAGGTTAAT
TATACCAGTTAATCTCActttttatatcaaaatataatttttcatgtttA
GTTGTTTTTGATCATAGGTTACTGTTTGTCTGATATCCAAGATATGACTG
AAATATCATTGTTAACCTCACAATTAGGGTTTTTTGTGAAATaacctcaa
attttacaccctactTGAAATATTAACCTCATTTTTCTAGCCTACCTTGT
TGCCCAATCATTTAAATAGTAAAACCCAATCATTTATTTTTGCTTTAACC
TCacatttcataccaattttggtCTATCTTTAAGGACCATTAGGTTAACC
TCAGTGCAAGTTAACCTCATATTTATAACCCTACTTTGAGCAAGAATATC
TCTTTAAATTTAACACTTAACCTCTATAATGTATATATCATTGTGAACCT
GAATAAATTTTGAGTTAGCATGTGAAGtaacaaataaaaacaagttaacc
tcatttatttatcctttgtcaaagtcaaaaaagttcttttgaaaaagtta
ggcGATTTTTGGGGGTTTTGACTTGAGATGGTCCTAACTCTACTATAATT
ATGGTATCTAATTTCTCAGAAATCCAATCAAGGTACCAGGGAAAAATTAC
AAGTGTTTAAAATGCACAGTGAACTTTAAATTCATGACTTTTTCATATGA
ATTTTTCTAATGTTGTCGTTTTTCAGAATCAAAGGATTTGATATACAAGG
TGATGAAGTGTCTCCAATCGTTCACCTTTATTTGAAAGACACCGAAGAAT
TATCCAGGGAGGACATCGAAACCAAATTAAGCCAATATGTTGATAAAGTA
AGAACACTGCTTTTTACAGAGCTATTTATTAGTGTTTTAAACGAAACACT
GCCAGCTAACGAAAACCAAAGGTCAAAGTTGGTTTTCAATCTGAAGATTT
ATGGAGCttcattttgttattttgcaaCTCAATTACCTAGACATAGAGCA
AATACTTGATATACATCAGTTGATTGCAAGTAGAGACTCTAAAAGGGTTC
CAAAAATCAGGAATTTTAAAATAGTCTCACTGGGGaactcaaatttcttt
aaaaaaatccttTGAGAGGTCTCGCTATAAAAAGATGGATTTAGCCCCAA
ACTTTACCTCACTTAGCGTCAAGGCTTAAATATTTGGGACACACAAAGCC
GTCATCAATCAGCCTTATTATTATTGTCTCCTTCTGTATACCTTTAAACA
TGCCCCATGACAATTGACTGTGTTCGAGCTTACCACAGCCGAATGACGCC
AAATGTATGAAGCCAATGTATTGACCCCTTTTGAAACTCGAGATCAATAT
TCTTGTGgtgttaaggccggtctccaNtgtaagtaagtaagttttgcgac
cgcagtcgagggcgacccgaaggctcccttttcgtatagctgtctacccg
aaggtagggcgccactcctttccctggatttctNgcgccaatggaattgc
ttcatttttcttttgaccaatagcgtggaagctttgctcgaaaaagtgcg
atcaaagcgcgcgcaagtggagaccgaccGTTACGGTTGATAGGTGTATT
AGTTTCAAGaatacacgttttatttttttaagaaactagttttaccaagc
agtctcaatgtttcttaagaaatcggccttttgagccttacttaaatgtt
tcttacatgtttctaaactttttgacgtaATCAGCCttatggaaggctgg
attggaaggttctttaaAAAACCTGAATTAGNTTGTTGAGCAGCAAGCAg
ggaggcatcaagtaccattttgggaatctttggtatgacccggctggagA
TTTTCTGTTATCAGGTGAATTACGCCgttgttatttttctttttctcttt
tcatttTAGTGTCAAGAAAAAGGCGTAGGACTAACAAGTTCTCGTTATTT
GAATGATTTAGAATTATATTTACCCCCTGCCAGGTAAGCATAAAACCATT
ACCTATAAATACCNttctcattctcagcctcagcatgtttcttagatgtt
tcttagtttttaggcattctgagcctcatgtttcttaaaagtgtgtttct
taaaaaaaaaaacgtgtagttaaaAGTTGAAGTTATTGCCGTATTCATTT
ACTTTGGAGGTTATAAATAAATGCATTtaatttataaataaataaataac
aatGCTATACAAATTCGCAGGCCACCGTAGAGTTATTTCCTAGGGCTCCC
CCTGACTTTTGTATTTTGTGTCCTTTATTAAATCATTAATTTCTTGGGCT
TTTATACACCACGCTTTTTAATTTTGCTCCGTTCACTTTTCATTAGATCT
tctgtaagtaagtaagttttgcgaccgcagtcgagggcgacccgaaggct
cccttttcgtatagctgtctacccgaaggtagggcgccactcctttccct
ggatttctccacttacccttgatccgtctctttagttgttGAGCAGCAAG
CAgggaggcatcaagtaccattttgggaatctttggtatgacccggctgg
agATTTTCTGTTATCAGGTGAATTACGCCgttgttatttttctttttctc
ttttcatttTAGTGTCAAGAAAAAGGCGTAGGACTAACAAGTTCTCGTTA
TTTGAATGATTTAGAATTATATTTACCCCCTGCCAGGTAAGCATAAAACC
ATTACCTATAAATACCTGGGTGCTCACAAAAATCGTAATCCTTTACTTAC
AGCAGGCTAATTGCTTACAGATTTCCCGCGAAAGTGTgagtcaaaaattt
tcttcgaaattctaagcttttgatttttcatgaaGGGGTAAAAATTGGAT
gcatggggacgaggttggggCAAACAAAGGTATTTCTCTACAGAGAGATC
TTCActgatttcttttaaaaattctattttttcagCATAAGAATATCATT
GAATTCTAAACTAGTCGAAGATGACATGGACAATTCAACTAATATCATGA
AAGAAATTGCTAATGAAATGTTTTAAAGAAGTCAAGGAGAATTGCATAAT
TGTATAATttataaacaaatgattttatgATTGATAAGGTTGAAAGCACG
CAGTGTATAAGCCCTAGTTTAGACgaccgactttctgccctgcctattct
attTGGCAAAAAGTGACCAGAAAGTTGGCAGTTTaaatatttgtttaaaa
aagattgaagaagtCATTGTATCGACATCAAACGGGGTCAATGCAtcgac
tttagacagccaactttcTGTCCACTTTAACTTACAATCGAATAGACAGG
GTGAAAAGTGGGCCGTTTAAAGCTAATTCACTTAAATTAACCTTGAAGTT
CAAATGATACGTTTCAAAAGATTTCCTTTTCATCAACAATGGAAACTAAA
GACAATTGTGATCGTCACACATCAATTTACCGTCAAGTTCCTTCGTCGCC
GTCAATTGTACCTGACTAACTCGTTGATCAGGCATTATGGAAAATTGCAA
TAATTACAGAATTATTAATCTCGTTATAATAGATAGTTTTTTGGCGTTCC
GGAgtatatattatttttattattcaattttatatccaaaattatttaca
aaaattgacCTTTCTTATCGATGCCTTTTTCGATATCATACCTTAAGAGT
AAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042470	XLOC_042470	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_478	supercontig	scaffold_478:631447..643350 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.9458	19.8745	10.1414	9.70768	0.828005	0.507019	0.947084	0.624651	15.3904	16.2577	15.1739	11.7343	14.8709	14.2547	12.9424	14.7026	20.911	22.8923	8.3471	11.7145	17.7918	17.8426	20.8668	20.3047	0.517549	0.559754	13.0769	10.8711	26.1665	23.4846

Blast

[Close]

BLAST of TCONS_00068024 vs. Swiss-Prot (Human)
Match: SPTC1 (Serine palmitoyltransferase 1 OS=Homo sapiens GN=SPTLC1 PE=1 SV=1)

HSP 1 Score: 452.981 bits (1164), Expect = 1.471e-151
Identity = 231/464 (49.78%), Postives = 332/464 (71.55%), Query Frame = 3

Query:  114 DYVESTLHVPFFHFILEVLLVLWIVRLLTGKSYNPXXXXXXXXXXXXXXXIADWEPEPLVPADSKIPEYVTKPRLVKGKPSYRININGNDCLNLCTMNFLGFVGNEEVEKAAITTLRNYGVGSCGPRGFYGTVDVHLDLEKKIAEYLGTEEAILYSYGFSTISSAIPAYSKRTDVIFCDKGVNFAIQKGISASRSKVYWFDHNDMEDLERKMKEQQEKDKKNPKKAVVTRRFLVIEGLYINTGDIASLPKIIELKNKYKVRVFIDESYSFGVLGKRGCGVTDHYDIPLDQIDLMAVSLEFSLGSVGGFCAGPSFVIDHQRLSGQGYCFSASLPPLLAVASQTGIELMEKDSSMFKKLENNCKYFRKQIEGIKGFDIQGDEVSPIVHLYLKDTEELSREDIETKLSQYVDKCQEKGVGLTSSRYLNDLELYLPPASIRISLNSKLVEDDMDNSTNIMKEIANEMF 1505
            + V++    P +H ILE +L+LWI+RLL  K+Y   + + +LT +E+E+LI +W+PEPLVP   K    +    +V G PS++  +NG +C+N  + NFLG + N  V+ AA+ +L+ YGVG+CGPRGFYGT DVHLDLE ++A+++ TEEAI+YSYGF+TI+SAIPAYSKR D++F D+   FAIQKG+ ASRS +  F HNDM DLER +KEQ+ +D+KNP+KA VTRRF+V+EGLY+NTG I  LP++++LK KYK R+F++ES SFGVLG+ G GVT+HY I +D IDL++ ++E +L S+GGFC G SFVIDHQRLSGQGYCFSASLPPLLA A+   + +ME++  +F  L+  C    K ++GI G  + G+ +SP  HL L+++     +D+   L + VD+C  + + LT +RYL   E  LPP SIR+ +  +  E++++ + + +KE+A  + 
Sbjct:   12 EMVQALYEAPAYHLILEGILILWIIRLLFSKTYK-LQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNY-NIVSGPPSHKTVVNGKECINFASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEEAIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMADLERLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEESLSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSGQGYCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKCGQIHKALQGISGLKVVGESLSPAFHLQLEESTGSREQDVRL-LQEIVDQCMNRSIALTQARYLEKEEKCLPPPSIRVVVTVEQTEEELERAASTIKEVAQAVL 472

The following BLAST results are available for this feature:

BLAST of TCONS_00068024 vs. Swiss-Prot (Human)

BLAST of TCONS_00068024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SPTC1	1.471e-151	49.78	Serine palmitoyltransferase 1 OS=Homo sapiens GN=S...	[more]

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TCONS_00068024 (transcript) - C. hemisphaerica