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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068153 ID=TCONS_00068153|Name=TCONS_00068153|organism=Clytia hemisphaerica|type=transcript|length=2035bp
CTTGTTCGTAGTTACATCATCAGTTTAGTGTTTTGGTATAAATGTAGAGA
AAGTGGTTTTCTTGTCACCGATAAAAAATACTCATTCCATTCAGTCACTG
AGTAGCTATATCTTCCTCGGAagacttgattttttttcttgcaaATTAAT
TTGTTAGAAGAAATCAAAACCAAACATGCGAGTACATCATACGACAACAT
CTTGCAATATCAAATCTACAAATGTGTAAAGCGAACCTTCTTAGTGTCAC
CGCGATAGAGGGAGACCATACGATGGAAGCAAAGACTCAAGCGGTCAATG
GTTTCATGCGTTGCAATGATTTGCATTCTTCCAATATCAAGATGGCTAAA
GAAGATCCATTCCGACCTGCTGATGAACACCACCATCATCAAGGTTGTCT
CATTTGTAGACAGGGGGCATCTTTTGGTCAGAAAAGTAGCTCTTTACTCC
GCATGCTTTATAGCTACCGAAGATTGAGCAAAGCTTTCGCCAAGATGTTC
CCGCCGTCAAGAAGAAAgaataaaagtgaaatattgAGACGTAAAAAGCG
CATTGAATTACCTAAAAATTGTACAAGGCAACCCAATTCTTCAACAGGAG
GAAAGCATAGATGGCTTCCTCGAACGACGGCGGTTCCAGGGGCATTACCG
ATGTCCCCGGAAGATCTGAAGATGGGTTTTCCatgcaaaataattttatt
aatGCAAATGGGTATGCAAAGGGCCCAACCAAAGATTCATCTGTTTTAAT
TGATGGACCGAATTCTTTCAATGTGAATGGGTATGTGAAGGACCCAACTT
tagactttgattttttattaaaagaatttgACCATGAATTTGATTTGGTA
AATTATATTAATACTGACCATAGCCAAAAGCTTAATCAAAACCATCCACC
ATCACCAAGCTCGTCCACTGCTTCTGAAACCGAGAGGATCCTGAACATGG
TAATGCCGAAAGGGTTGAATACAGTTGAGCAGGAGCAAAATAGCATTGAC
ATAGATGCTAATCTTGCAGCTCCGGACAACTCCGTTACAACAATGTCAAC
ACCTTTAATAGAACAACATTCGGTTATATCTTGTGATCAAATAAACAAAG
CGGATTTGTTTCTGCATTCTACCCAACAAAATGCTTGTGGCAAGACAAGG
CGACGCCGTAACACAAAAACTACGACCGAAATCCAACAAAAGAAAGCTGA
GCGCAGGAAAAAGAACAATCTCGCTTCCAAAGAACTGCGCCAGAGACGGA
AAGAGGATTCTGAAAAGTTAACGAAACAAGAAATGGAACTAGAATATGAG
AGTAAAGAACTACGGGACAAAGTGAAATCTCTGGAAGGTGGGATTAATGT
AATCATCTCAGTTTTCGATGGCATTTCTAGACAGTTGATTCAAAGTAATT
CTCTTCAATTCAGAGAAAATTTCTTGAATCTAATACGTTTGCTAGGTCAA
GCGGGTCAGTCTGGAGATGTAACTTCTCAAACGGCGATCGGAAAATTATT
ACAAGTATATCGTAATCAAGTAGATAGGACTATGGATGATAAAGCCAAGA
ATAAGCTTCTCCAATGGTTGAAGTTCAAACTGGATGTTCATGACAGTTGG
TAGTATTTTaaaatattagtttttttatttttggttttaTCTGAAATACT
CCTTTGCATCTTCCTCTTGttatcaataaatttgaaaagattaaaattta
aaaactttgcGACTACTTCATACAGCTCGCAGATAGATTTCTATACACGC
ACTTTCAGCAAAAAGGGTCTAAAAAGATTGATATGAGAAGTGTATGGGGT
ATACTTTTCGGTCAAAATCGTGCGACTGGTCGTTTTAAATTGATATACGT
CTTTAAAGCATGTTTAATGGATGATTTTCAGATTTCAAGGAATCAGAGGA
GTAACAAAAGATAATGAAATGTAAATAGTTATTATAAATTTTTACGGACA
TTACATAGCACAGTGTGCTTTTCTTTACTATGTATTCATTTATATGTAGT
TTGTtacaacaaaatatttcaaaatgttttaaaac Run BLAST on NCBI protein sequence of TCONS_00068153-protein >TCONS_00068153-protein ID=TCONS_00068153-protein|Name=TCONS_00068153-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
MASSNDGGSRGITDVPGRSEDGFSMQNNFINANGYAKGPTKDSSVLIDGP
NSFNVNGYVKDPTLDFDFLLKEFDHEFDLVNYINTDHSQKLNQNHPPSPS
SSTASETERILNMVMPKGLNTVEQEQNSIDIDANLAAPDNSVTTMSTPLI
EQHSVISCDQINKADLFLHSTQQNACGKTRRRRNTKTTTEIQQKKAERRK
KNNLASKELRQRRKEDSEKLTKQEMELEYESKELRDKVKSLEGGINVIIS
VFDGISRQLIQSNSLQFRENFLNLIRLLGQAGQSGDVTSQTAIGKLLQVY
RNQVDRTMDDKAKNKLLQWLKFKLDVHDSW Run BLAST on NCBI transcript from alignment at scaffold_48:127983..130674- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068153 ID=TCONS_00068153|Name=TCONS_00068153|organism=Clytia hemisphaerica|type=transcript|length=2692bp|location=Sequence derived from alignment at scaffold_48:127983..130674- (Clytia hemisphaerica)
CTTGTTCGTAGTTACATCATCAGTTTAGTGTTTTGGTATAAATGTAGAGA
AAGTGGTTTTCTTGTCACCGATAAAAAATACTCATTCCATTCAGTCACTG
AGTAGCTATATCTTCCTCGGAAGACTTGATTTTTTTTCTTGCAAATTAAT
TTGTTAGAAGAAATCAAAAGTAAGTGAAACATTTTTTCTACGAATAGATT
TCATGATTTTGATCTAAAGAGCTGGAGAATGTCTTGGTATGGTTAAAGCT
TATTTACGCAAGAAGCTGATCTTCCTCCGATCCTATGGTACCATATCATT
ACAAGATCTGACAGATTAAACCCTGGTTACTCTGATCATAATTTGATCAA
GCTAACCACGCAATGATCAACGAGAACTAACCATGATTATATATAATACC
ATTTTCCTTTTCAGCCAAACATGCGAGTACATCATACGACAACATCTTGC
AATATCAAATCTACAAATGTGTAAAGCGAACCTTCTTAGTGTCACCGCGA
TAGAGGGAGACCATACGATGGAAGCAAAGACTCAAGCGGTCAATGGTTTC
ATGCGTTGCAATGATTTGCATTCTTCCAATATCAAGATGGCTAAAGAAGA
TCCATTCCGACCTGCTGATGAACACCACCATCATCAAGGTTGTCTCATTT
GTAGACAGGGGGCATCTTTTGGTCAGAAAAGTAGCTCTTTACTCCGCATG
CTTTATAGCTACCGAAGATTGAGCAAAGCTTTCGCCAAGATGTTCCCGCC
GTCAAGAAGAAAGAATAAAAGTGAAATATTGAGACGTAAAAAGCGCATTG
AATTACCTAAAAATTGTACAAGGCAACCCAATTCTTCAACAGGAGGAAAG
CATAGATGGCTTCCTCGAACGGTACGTATCGGTTATCACAATTGCTATTT
CAGTTTCTTTATTTATCCCATTAACCATCTGGCCCTAGCCTCGAATTATA
CAAAATTACTGCTATAGGTTAAAAAACTATCAGCTCATCGAAAGGAATCC
AAAATTATAAAAATAGAAGAAGCTTCTCGTGGTATCTTTTCCAAAACTTA
GGGTTACAATTTAAAAATCGCTATATAGTTGTCAGTTTTCCGTCTGCAAA
TAAAGTTCAACCCCAAAGTATATAACAAGGATGACCTGAAAATGGAGACC
GTGTTTGCGCATAGAATGATGGGGTAAAAGCTTTGATTTTTTGTAACTGT
TAAAGTGAGCACCAAATGTTAGAGAAACGTTTATCAAACAAACAAAACGT
ACTGTGTGGAACCTTTCTTTCCTTTATTTCTAGACGGCGGTTCCAGGGGC
ATTACCGATGTCCCCGGAAGATCTGAAGATGGGTTTTCCATGCAAAATAA
TTTTATTAATGCAAATGGGTATGCAAAGGGCCCAACCAAAGATTCATCTG
TTTTAATTGATGGACCGAATTCTTTCAATGTGAATGGGTATGTGAAGGAC
CCAACTTTAGACTTTGATTTTTTATTAAAAGAATTTGACCATGAATTTGA
TTTGGTAAATTATATTAATACTGACCATAGCCAAAAGCTTAATCAAAACC
ATCCACCATCACCAAGCTCGTCCACTGCTTCTGAAACCGAGAGGATCCTG
AACATGGTAATGCCGAAAGGGTTGAATACAGTTGAGCAGGAGCAAAATAG
CATTGACATAGATGCTAATCTTGCAGCTCCGGACAACTCCGTTACAACAA
TGTCAACACCTTTAATAGAACAACATTCGGTTATATCTTGTGATCAAATA
AACAAAGCGGATTTGTTTCTGCATTCTACCCAACAAAATGCTTGTGGCAA
GACAAGGCGACGCCGTAACACAAAAACTACGACCGAAATCCAACAAAAGA
AAGCTGAGCGCAGGAAAAAGAACAATCTCGCTTCCAAAGAACTGCGCCAG
AGACGGAAAGAGGATTCTGAAAAGTTAACGAAACAAGAAATGGAACTAGA
ATATGAGAGTAAAGAACTACGGGACAAAGTGAAATCTCTGGAAGGTGGGA
TTAATGTAATCATCTCAGTTTTCGATGGCATTTCTAGACAGTTGATTCAA
AGTAATTCTCTTCAATTCAGAGAAAATTTCTTGAATCTAATACGTTTGCT
AGGTCAAGCGGGTCAGTCTGGAGATGTAACTTCTCAAACGGCGATCGGAA
AATTATTACAAGTATATCGTAATCAAGTAGATAGGACTATGGATGATAAA
GCCAAGAATAAGCTTCTCCAATGGTTGAAGTTCAAACTGGATGTTCATGA
CAGTTGGTAGTATTTTAAAATATTAGTTTTTTTATTTTTGGTTTTATCTG
AAATACTCCTTTGCATCTTCCTCTTGTTATCAATAAATTTGAAAAGATTA
AAATTTAAAAACTTTGCGACTACTTCATACAGCTCGCAGATAGATTTCTA
TACACGCACTTTCAGCAAAAAGGGTCTAAAAAGATTGATATGAGAAGTGT
ATGGGGTATACTTTTCGGTCAAAATCGTGCGACTGGTCGTTTTAAATTGA
TATACGTCTTTAAAGCATGTTTAATGGATGATTTTCAGATTTCAAGGAAT
CAGAGGAGTAACAAAAGATAATGAAATGTAAATAGTTATTATAAATTTTT
ACGGACATTACATAGCACAGTGTGCTTTTCTTTACTATGTATTCATTTAT
ATGTAGTTTGTTACAACAAAATATTTCAAAATGTTTTAAAAC Coding sequence (CDS) from alignment at scaffold_48:127983..130674- >TCONS_00068153 ID=TCONS_00068153|Name=TCONS_00068153|organism=Clytia hemisphaerica|type=CDS|length=1986bp|location=Sequence derived from alignment at scaffold_48:127983..130674- (Clytia hemisphaerica)
ACGGCGGTTCCAGGGGCATTACCGATGTCCCCGGAAGATCTGAAGATGGG
TTTTCCATGCAAAATAATTTTATTAATGCAAATGGGTATGCAAAGGGCCC
AACCAAAGATTCATCTGTTTTAATTGATGGACCGAATTCTTTCAATGTGA
ATGGGTATGTGAAGGACCCAACTTTAGACTTTGATTTTTTATTAAAAGAA
TTTGACCATGAATTTGATTTGGTAAATTATATTAATACTGACCATAGCCA
AAAGCTTAATCAAAACCATCCACCATCACCAAGCTCGTCCACTGCTTCTG
AAACCGAGAGGATCCTGAACATGGTAATGCCGAAAGGGTTGAATACAGTT
GAGCAGGAGCAAAATAGCATTGACATAGATGCTAATCTTGCAGCTCCGGA
CAACTCCGTTACAACAATGTCAACACCTTTAATAGAACAACATTCGGTTA
TATCTTGTGATCAAATAAACAAAGCGGATTTGTTTCTGCATTCTACCCAA
CAAAATGCTTGTGGCAAGACAAGGCGACGCCGTAACACAAAAACTACGAC
CGAAATCCAACAAAAGAAAGCTGAGCGCAGGAAAAAGAACAATCTCGCTT
CCAAAGAACTGCGCCAGAGACGGAAAGAGGATTCTGAAAAGTTAACGAAA
CAAGAAATGGAACTAGAATATGAGAGTAAAGAACTACGGGACAAAGTGAA
ATCTCTGGAAGGTGGGATTAATGTAATCATCTCAGTTTTCGATGGCATTT
CTAGACAGTTGATTCAAAGTAATTCTCTTCAATTCAGAGAAAATTTCTTG
AATCTAATACGTTTGCTAGGTCAAGCGGGTCAGTCTGGAGATGTAACTTC
TCAAACGGCGATCGGAAAATTATTACAAGTATATCGTAATCAAGTAGATA
GGACTATGGATGATAAAGCCAAGAATAAGCTTCTCCAATGGTTGAAGTTC
AAACTGGATGTTCATGACAGTTGGTAGATGGCTTCCTCGAACGACGGCGG
TTCCAGGGGCATTACCGATGTCCCCGGAAGATCTGAAGATGGGTTTTCCA
TGCAAAATAATTTTATTAATGCAAATGGGTATGCAAAGGGCCCAACCAAA
GATTCATCTGTTTTAATTGATGGACCGAATTCTTTCAATGTGAATGGGTA
TGTGAAGGACCCAACTTTAGACTTTGATTTTTTATTAAAAGAATTTGACC
ATGAATTTGATTTGGTAAATTATATTAATACTGACCATAGCCAAAAGCTT
AATCAAAACCATCCACCATCACCAAGCTCGTCCACTGCTTCTGAAACCGA
GAGGATCCTGAACATGGTAATGCCGAAAGGGTTGAATACAGTTGAGCAGG
AGCAAAATAGCATTGACATAGATGCTAATCTTGCAGCTCCGGACAACTCC
GTTACAACAATGTCAACACCTTTAATAGAACAACATTCGGTTATATCTTG
TGATCAAATAAACAAAGCGGATTTGTTTCTGCATTCTACCCAACAAAATG
CTTGTGGCAAGACAAGGCGACGCCGTAACACAAAAACTACGACCGAAATC
CAACAAAAGAAAGCTGAGCGCAGGAAAAAGAACAATCTCGCTTCCAAAGA
ACTGCGCCAGAGACGGAAAGAGGATTCTGAAAAGTTAACGAAACAAGAAA
TGGAACTAGAATATGAGAGTAAAGAACTACGGGACAAAGTGAAATCTCTG
GAAGGTGGGATTAATGTAATCATCTCAGTTTTCGATGGCATTTCTAGACA
GTTGATTCAAAGTAATTCTCTTCAATTCAGAGAAAATTTCTTGAATCTAA
TACGTTTGCTAGGTCAAGCGGGTCAGTCTGGAGATGTAACTTCTCAAACG
GCGATCGGAAAATTATTACAAGTATATCGTAATCAAGTAGATAGGACTAT
GGATGATAAAGCCAAGAATAAGCTTCTCCAATGGTTGAAGTTCAAACTGG
ATGTTCATGACAGTTGGTAGATGGCTTCCTCGAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068153-exon-scaffold_48-1575043694:130506..130674 | TCONS_00068153-exon-scaffold_48-1575043694:130506..130674 | Clytia hemisphaerica | exon |
| TCONS_00068153-exon-scaffold_48-1575043694:129804..130260 | TCONS_00068153-exon-scaffold_48-1575043694:129804..130260 | Clytia hemisphaerica | exon |
| TCONS_00068153-exon-scaffold_48-1575043694:127983..129391 | TCONS_00068153-exon-scaffold_48-1575043694:127983..129391 | Clytia hemisphaerica | exon |
| TCONS_00068153-exon-scaffold_48-1510915933:130506..130674 | TCONS_00068153-exon-scaffold_48-1510915933:130506..130674 | Clytia hemisphaerica | exon |
| TCONS_00068153-exon-scaffold_48-1510915933:129804..130260 | TCONS_00068153-exon-scaffold_48-1510915933:129804..130260 | Clytia hemisphaerica | exon |
| TCONS_00068153-exon-scaffold_48-1510915933:127983..129391 | TCONS_00068153-exon-scaffold_48-1510915933:127983..129391 | Clytia hemisphaerica | exon |
| TCONS_00068153-exon-scaffold_48-1491911889:130506..130674 | TCONS_00068153-exon-scaffold_48-1491911889:130506..130674 | Clytia hemisphaerica | exon |
| TCONS_00068153-exon-scaffold_48-1491911889:129804..130260 | TCONS_00068153-exon-scaffold_48-1491911889:129804..130260 | Clytia hemisphaerica | exon |
| TCONS_00068153-exon-scaffold_48-1491911889:127983..129391 | TCONS_00068153-exon-scaffold_48-1491911889:127983..129391 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_48 | supercontig | scaffold_48:127983..130674 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004827 | bZIP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
The following BLAST results are available for this feature:
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