TCONS_00068156 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068156
Unique NameTCONS_00068156
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1206

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068156 ID=TCONS_00068156|Name=TCONS_00068156|organism=Clytia hemisphaerica|type=transcript|length=1206bp
GCATGGTCAAACTTTTTcgataaagatttttaaaatgagTTACAATTTTT
AGAAAAGCAATACAAACCAATCGAGATGGAGGTCATTCGAAAGAAGTTAG
GaggaatgaaaaagaaattggttGAAGCAGAAACCGAAGCTCGAGGAATG
GAAAAGGAATTAGAACAAGTCAACACAAAAGCCGAAAGTACGGAAGAGAA
AGTGAAACTGATTCAAGAAAAAGTCGGAGATTTGGAGGAGAAATTGGACG
AAATGGAACGACGACATGACGAAACGTCCACTAAACTGGCGGACGCCGAG
AAAAAAGGCGACGAGGTGAAACGAATGCACAATGAGCTCAGTGCACGCGG
TGGAACGACCGCTACCAAATTGGAACAACTGGAAACAGAATTGAGCGAAT
ATCAAGCCAGAGAAAAAGATGTCACTGAGCTATATACCAAGTTGGCACCA
GAGTTGACAGAAATGGAGGAAAATTTGGAAGAGGAAGAAGAAAGATGTAA
CGTGGCTGACGATCGCGTCAAAACATTGgaagaaaaattcattcaaCTTG
GCAATAATTTGAGAAGCATGGAACGATATGAACTCAAATCGAACGAACGA
GGAACAGAAATTCAACTGAAAATCACTGAATTGCAAAACAAGGTGGAAGA
GGCATTGGCAAAAGCTGAGAAGTTTGAAGCACAAGCATCTGAGTTAGAAG
AAAATCTCGAAGCCTGTGAAAGTGACTTGCAGCGTGAGAAAGAAGCTTAC
GACAAAACCAAATCCACTTATGACATCTTGCTGGCTGAGATCCAAACATT
CTAAAGAAAGACTTCGTATTAATGAAATGAAAGATGGTGAATTTATGTTA
GAGGATGAGAGTGAGATGTAAAAGGTGTATGACATGACCGCATGCTGAGC
GATAATGATTATTCAATTTGAATGCGTATATGATTGAAAGAATTTGGCTT
AGATAAGTAGAAGAATTTATTATGTACCATACGAATGTGAAACTGTAACG
TTGAGAATACTGTAGAAACTGACAACCTTGTGCAAGGACgtgcaaaattc
catgatggtgatattcgggtgatatttttagcattattcttaattttttg
gccattttcatttgtatttttataaaaaaagcgtgtagtttaAGAATATC
TATAATATGTTTctctacaatatattttttaacaaagaaaaagacGAAGA
GATTTC
Run BLAST on NCBI

transcript from alignment at scaffold_48:139836..144751-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068156 ID=TCONS_00068156|Name=TCONS_00068156|organism=Clytia hemisphaerica|type=transcript|length=4916bp|location=Sequence derived from alignment at scaffold_48:139836..144751- (Clytia hemisphaerica)
GCATGGTCAAACTTTTTCGATAAAGATTTTTAAAATGAGTTACAATTTTT
AGAAAAGCAATACAAACCAATCGAGATGGAGGTCATTCGAAAGAAGTTAG
GAGGAATGAAAAAGAAATTGGTTGAAGCAGAAACCGAAGCTCGAGGAATG
GAAAAGGAATTAGAACAAGTCAACACAAAAGCCGAAAGTGTAAGTTCTGA
GTATCAAATTTCACCCTAACCCTCAAGCCAATGTCGGGTATACCAGATAT
GAGCTATATAGGAGGGCGAACATCCAGTTTGAGCAAGAAATCGTCATTTT
TGATCGAATTGGATTGGGCTTCATGGTCAAGCAAAAAAAAAATCAAAAGT
GAGTCTTTCAAGCGAGACTTTAAGCCAAAAAGTCAAAAATTTGACAAAAA
TCCACTTTTTAAAGATCTTGACCATTTTTGACCATTTTTGATCAACGAAT
GATCCAAGAACCTCCAAATTTCACCCTGCTTTACCCGATTCTGTTCTTAG
CGAATTAATTTAAAATTTTACTACTGGGCACCTTTCCATCATTCAGGCAG
GTCCTCACAGTGAATCGGACGGCGCCGAAGGCACCTAAAAGAAAGAAGAG
ACTCTGAGCTATCCAACGAACTATGAACGAGCTTCTAACTCTTTCTAGAT
CCGGAGATATAAGCCTTTTAGGTTTGAACTAGCGATTTTCTTTAAAAAAC
TTAGAAAAAAATGACCGTGACACTTAAGTATAGGGTTAATATAAACGTTC
TTTTCGTCAAAACATGATTTATATTAGAATCTGTAAAGTAATAAGAAAAG
TCCGAAATTCCGCAAATTTTTTTGCTAAATTCCGTTTTTCCGCACAAAAT
AGTCTAATTTTCCGTCTCCGTCAGAGAACCCAATTTCCGTAATTCCGTCT
AAATTTTCGCCAAATTCCGCCACTCCGTCTGAAAAAAGGGCCGATTCCCC
CCCCCCCCCCCGTCCAAAAAAAGGGCCGTGCCCCCCCCCCCCCCCGTCCA
AAAAAAGGGCCGTGCCCCCCCCCCCCCCCGTCCAAAAAAAGGGCCGTGCC
CCCCCCCCCCCCCGTCCAAAAAAAGGGCCGTGCCCCCCCCCCCCCCCGTC
CAAAAAAAGGGCCGTGCCCCCCCCCCCCCCCGTCCAAAAAAAGGGCCGTG
CCCCCCCCCCCCCCCGTCCAAAAAAAGGGCCGTGCCCCCCCCCCCCCCCG
TCCAAAAAAAGGGCCGTGCCCCCCCCCCCCCCCGTCCAAAAAAAGGGCCG
TGCCCCCCCCCCCCCCCGTCCAAAAAAAGGGCCGTGCCCCCCCCCCCCCC
CGTCCAAAAAAAGGGCCGTGCCCCCCCCCCCCCCCGTCCAAAAAAAGGGC
CGTGCCCCCCCCCCCCCCCGTCCAAAAAAAGGGCCGTGCCCCCCCCCCCC
CCCGTCCAAAAAAAGGGCCGTGCCCCCCCCCCCCCCCGTCCAAAAAAAGG
GCCGTGCCCCCCCCCCCCCCCGTCCAAAAAAAGGGCCGTGCCCCCCCCCC
CCCCCGTCCAAAAAAAGGGCCGTGCCCCCCCCCCCCCCCGTCCAAAAAAA
GGGCCGTGCCCCCCCCCCCCCCCGTCCAAAAAAAGGGCCGTGCCCCCCCC
CCCCCCCGTCCAAAAAAAGGGCCGTGCCCCCCCCCCCCCCCGTCCAAAAA
AAGGGCCGTGCCCCCCCCCCCCCCCGTCCAAAAAAAGGGCCGTGCCCCCC
CCCCCCCCCGTCCAAAAAAAGGGCCGTGCCCCCCCCCCCCCCCGTCCAAA
AAAAGGGCCGTGCCCCCCCCCCCCCCCTATAAAGCACTCCCGCTTAACAA
AACGCTATACAAAGAATTTAGGCCAATTTAGAAGAATTGAGGAAGAATTT
AAAGCTTTGGAATAATACACGTTTTTTTTTATTAGAACACCTAAAATTTG
GCTCAGCCTGGATGTGCTTATTCTTTTAGCAATTTTCAGCCTGAAATGTT
CTTAGATGCGTTCTTAAATTTTCAGACTACTCTAAATCGACAATATCATG
CAAAATAAAGAGAACTTCCATTCCTAATCCATTCCTAAGTTTGTTTTAAA
CTGTTTGAAAAGAGGAAAAAATTGTAGTTTCTTGTCATTTTTTTCCAAAT
TGAGGCTGGGCATGTTCTTACGATGTTCTTAATTTTTCGACGAACTTCAG
CCTCAATGTTCTTATAAACTGGGTTCTGATGAAAGAAAAAACGTGTATTC
CTATTCCTGATAAACTATTTTAATGTTTAACAATTTCATTGTTCACTGTT
CTTGTAGACGGAAGAGAAAGTGAAACTGATTCAAGAAAAAGTCGGAGATT
TGGAGGAGAAATTGGACGAAATGGAACGACGACATGACGAAACGTCCACT
AAACTGGCGGACGCCGAGAAAAAAGGCGACGAGGTGAAACGAATGCACAA
TGAGCTCAGTGCACGCGGTGGAACGACCGCTACCAAATTGGAACAACTGG
AAACAGAATTGAGCGAATATCAAGCCAGAGAAAAAGATGTCACTGAGCTA
TATACCAAGGTAGAGACAAATTAAGTTAATGTTATAGGCCCCTTTACTAA
CTGAAATGAGATCTTAAATTATAATTAGGGACAGTGAAAATGTTGAAACT
ACTAAAGGCGCTACTAAACTGATACATCCTTTGGGAAGAAAGCAAATTAA
TCAACTTTACATTTCTTTTGCATATTCAAGTTGGCACCAGAGTTGACAGA
AATGGAGGAAAATTTGGAAGAGGAAGAAGAAAGATGTAACGTGGCTGACG
AGTAAGTGCTCTCATGTTCGGCTCTGGTTTTTAGCTCTATAACTACACCA
ATGTCTCCTGGACTCGGTGGGACCCCCATCCCACTGAAAAATTAGTCAAA
CTTTGTTCCTAGTGGGTAAATACTCTTTACAACTTTATAACATTGAAGTA
ACAAAAAATCCTACAACAAGAATATCTGGCTACAATCCAAAACCATCAAA
AACATTTCCCCCATTCAATCAAAGATTGATAATGTTTGGTCAAAATGACT
GAGTCAGCTATCTGGCTGTGAATACGGAAACTGCTCTTCACAGAACTTGA
CTTTTCCGGGGTGGATAGCGTTCATTTGACTGACCCGTAGACCAGCGAGG
ATAGAAAAGAAGTTGGTTTCCCTTTTTTGTTAAACTTTGAATTTCATCCA
CTTCATAATTTGGTTTTCCGGCCCGGGACCCGACGTCCCTGAAAAGTCAA
TATTTTGTCCTCAACTTTTAGTCGCGTCAAAACATTGGAAGAAAAATTCA
TTCAACTTGGCAATAATTTGAGAAGCATGGAACGATATGAACTCAAATCG
AACGAACGAGGAACAGAAATTCAACTGAAAATCACTGAATTGCAAAACAA
GGTGGAAGAGGTATGATATGAACAAGCCTCTAGTCTGCTAACCATTGAAT
AGAAAGACAAACATTTTCAATGGTTTTGTGTAGCTGTAGTCATATCAATG
AAGGAAAGTCGAAGACTAGAAAATAATCTCCTAATCTCCTACCATTTGAA
GATATTCGTTTCCTAAATAGATTGTGTGGCCTGCTTGGTTTTCATAGGTG
TTTCCCACCCGTGGGAACTAATGACTGTGATTTCTTGTTTCTATCTTGTC
CTTCTACGTTTTTAGAGTTTTGTAGTGTAAGTTTTATACTTATTCCGCAG
TGTGATATCGGAAATCACACTGCCAAAACAATCACACCTTATCAGTTTAT
AAAATCACACGCAAAAATTGATTTTTGAAAATTACGGCGTCGGAATTTAA
GTTTTCCCACCCGTATGATCTGATGACTTTTTCCTGTGTTTTAAGATGAC
GACAATTTTCATGATTTATAACAATCATTGGTTGGCAGCATAAGTTCGAT
TGCGCTGATGCGCCCTGCTGTTTTGAGAGTCGTTATGGAGAATTTATCCA
ATATTTGACGAGTGTTCTTTTCGTACCTATATATAGGCATTGGCAAAAGC
TGAGAAGTTTGAAGCACAAGCATCTGAGTTAGAAGAAAATCTCGAAGCCT
GTGAAAGTAAGTACCGTTTCACCATTCTTCTTCCGATAATAACCCCAAAA
CACCCCTGTCTCAGTGGCATTAAAGGAATCTTTAAACCAATAGGGATGAA
ATGCAATGGAGACGTAAATTATTCATCGGTGGGTCAAAATCGGCGTTTTT
CAAAATTATAGTGACTTTTCAATGAGTTCAGTGAAACTTTCCAGTATAGG
TCAAGCGAGGTTAGCATTTTAGTGGAGAGGATTTACAAAATGGGGTATTG
AAACTACTCGCGTGCTTAAAAAAGTTCAACAATTGATCAAGACGAGCAAA
TGAATCTTTTTTCTTGAGCTGCCTAACATCACATTGAAAAGAAGGTTTTT
TTTGCAAAACATACTTGTATATACATTTGACAGGGGACTGGCTGAAATAT
TTAAGGTGTGTATTTTATCATTTATCTCTAGGTGACTTGCAGCGTGAGAA
AGAAGCTTACGACAAAACCAAATCCACTTATGACATCTTGCTGGCTGAGA
TCCAAACATTCTAAAGAAAGACTTCGTATTAATGAAATGAAAGATGGTGA
ATTTATGTTAGAGGATGAGAGTGAGATGTAAAAGGTGTATGACATGACCG
CATGCTGAGCGATAATGATTATTCAATTTGAATGCGTATATGATTGAAAG
AATTTGGCTTAGATAAGTAGAAGAATTTATTATGTACCATACGAATGTGA
AACTGTAACGTTGAGAATACTGTAGAAACTGACAACCTTGTGCAAGGACG
TGCAAAATTCCATGATGGTGATATTCGGGTGATATTTTTAGCATTATTCT
TAATTTTTTGGCCATTTTCATTTGTATTTTTATAAAAAAAGCGTGTAGTT
TAAGAATATCTATAATATGTTTCTCTACAATATATTTTTTAACAAAGAAA
AAGACGAAGAGATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042542XLOC_042542Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068156-exon-scaffold_48-1575043694:144563..144751TCONS_00068156-exon-scaffold_48-1575043694:144563..144751Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1575043694:142243..142494TCONS_00068156-exon-scaffold_48-1575043694:142243..142494Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1575043694:142001..142071TCONS_00068156-exon-scaffold_48-1575043694:142001..142071Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1575043694:141392..141530TCONS_00068156-exon-scaffold_48-1575043694:141392..141530Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1575043694:140746..140815TCONS_00068156-exon-scaffold_48-1575043694:140746..140815Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1575043694:139836..140320TCONS_00068156-exon-scaffold_48-1575043694:139836..140320Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1510915933:144563..144751TCONS_00068156-exon-scaffold_48-1510915933:144563..144751Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1510915933:142243..142494TCONS_00068156-exon-scaffold_48-1510915933:142243..142494Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1510915933:142001..142071TCONS_00068156-exon-scaffold_48-1510915933:142001..142071Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1510915933:141392..141530TCONS_00068156-exon-scaffold_48-1510915933:141392..141530Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1510915933:140746..140815TCONS_00068156-exon-scaffold_48-1510915933:140746..140815Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1510915933:139836..140320TCONS_00068156-exon-scaffold_48-1510915933:139836..140320Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1491911889:144563..144751TCONS_00068156-exon-scaffold_48-1491911889:144563..144751Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1491911889:142243..142494TCONS_00068156-exon-scaffold_48-1491911889:142243..142494Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1491911889:142001..142071TCONS_00068156-exon-scaffold_48-1491911889:142001..142071Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1491911889:141392..141530TCONS_00068156-exon-scaffold_48-1491911889:141392..141530Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1491911889:140746..140815TCONS_00068156-exon-scaffold_48-1491911889:140746..140815Clytia hemisphaericaexon
TCONS_00068156-exon-scaffold_48-1491911889:139836..140320TCONS_00068156-exon-scaffold_48-1491911889:139836..140320Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:139836..144751 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0355845	0.104101	0	0	0	0	0	0.214151	0.172576	0	0.0721037	0.213292	0	0.544404	0	0	0	0	0	0	0.180484	0.12342	69.3698	63.1219	148.281	110.987	2.57395	0.624884	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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