TCONS_00068334 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068334
Unique NameTCONS_00068334
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068334 ID=TCONS_00068334|Name=TCONS_00068334|organism=Clytia hemisphaerica|type=transcript|length=452bp
AAATGAGTGACAACAGCTGTGAGAGGGAGTACAAACAAGATGGCCAAAAT
AACACAAGTTCGTCTGAAAGTCATCAATACGTCATACTTGATATTTAAGT
AAATTTCCAGGAATCTATTGACAGTGATAAAGCCCATTAACAACAAGTAC
CATATCGAGAATCCAGTATTCTGGACCGGTTCAAGCATAAAAAACCATTC
GCTTTCATATGGTACTTTGTTCATGAGAAAAATACGACGTAACCCGTATG
TAAATCCGGTACCGGACTCGCACAAGCTTAGATTAGCTAGATACAATCTT
TTGACAGTACTGATTCTTGATCTCGGTGTCTTGTACAGGACGAATAAACA
GAATAAATGAATCACAGATGACATCATGAAGACGAAGATTTGCCCGGTGT
AATAAATATCTGCATGTTGTACTTCGGTTAAGTTTTGGAATTGTTTTTGA
TT
Run BLAST on NCBI

protein sequence of TCONS_00068334-protein

>TCONS_00068334-protein ID=TCONS_00068334-protein|Name=TCONS_00068334-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
NQKQFQNLTEVQHADIYYTGQIFVFMMSSVIHLFCLFVLYKTPRSRISTV
KRLYLANLSLCESGTGFTYGLRRIFLMNKVPYESEWFFMLEPVQNTGFSI
WYLLLMGFITVNRFLEIYLNIKYDVLMTFRRTCVILAILFVLPLTAVVTH
Run BLAST on NCBI

transcript from alignment at scaffold_482:407077..407528

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068334 ID=TCONS_00068334|Name=TCONS_00068334|organism=Clytia hemisphaerica|type=transcript|length=452bp|location=Sequence derived from alignment at scaffold_482:407077..407528 (Clytia hemisphaerica)
AATCAAAAACAATTCCAAAACTTAACCGAAGTACAACATGCAGATATTTA
TTACACCGGGCAAATCTTCGTCTTCATGATGTCATCTGTGATTCATTTAT
TCTGTTTATTCGTCCTGTACAAGACACCGAGATCAAGAATCAGTACTGTC
AAAAGATTGTATCTAGCTAATCTAAGCTTGTGCGAGTCCGGTACCGGATT
TACATACGGGTTACGTCGTATTTTTCTCATGAACAAAGTACCATATGAAA
GCGAATGGTTTTTTATGCTTGAACCGGTCCAGAATACTGGATTCTCGATA
TGGTACTTGTTGTTAATGGGCTTTATCACTGTCAATAGATTCCTGGAAAT
TTACTTAAATATCAAGTATGACGTATTGATGACTTTCAGACGAACTTGTG
TTATTTTGGCCATCTTGTTTGTACTCCCTCTCACAGCTGTTGTCACTCAT
TT

Coding sequence (CDS) from alignment at scaffold_482:407077..407528

>TCONS_00068334 ID=TCONS_00068334|Name=TCONS_00068334|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_482:407077..407528 (Clytia hemisphaerica)
AATCAAAAACAATTCCAAAACTTAACCGAAGTACAACATGCAGATATTTA
TTACACCGGGCAAATCTTCGTCTTCATGATGTCATCTGTGATTCATTTAT
TCTGTTTATTCGTCCTGTACAAGACACCGAGATCAAGAATCAGTACTGTC
AAAAGATTGTATCTAGCTAATCTAAGCTTGTGCGAGTCCGGTACCGGATT
TACATACGGGTTACGTCGTATTTTTCTCATGAACAAAGTACCATATGAAA
GCGAATGGTTTTTTATGCTTGAACCGGTCCAGAATACTGGATTCTCGATA
TGGTACTTGTTGTTAATGGGCTTTATCACTGTCAATAGATTCCTGGAAAT
TTACTTAAATATCAAGTATGACGTATTGATGACTTTCAGACGAACTTGTG
TTATTTTGGCCATCTTGTTTGTACTCCCTCTCACAGCTGTTGTCACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042649XLOC_042649Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068334-exon-scaffold_482-1491911889:407077..407528TCONS_00068334-exon-scaffold_482-1491911889:407077..407528Clytia hemisphaericaexon
TCONS_00068334-exon-scaffold_482-1510915933:407077..407528TCONS_00068334-exon-scaffold_482-1510915933:407077..407528Clytia hemisphaericaexon
TCONS_00068334-exon-scaffold_482-1575043694:407077..407528TCONS_00068334-exon-scaffold_482-1575043694:407077..407528Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068334-proteinTCONS_00068334-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:407077..407528 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.437997	0.284744	0.495922	0.161728	0.393775	0.311167	0.750819	0.351454	0.123031	0	0.443749	0.194469	1.26229	1.10922	0.248709	0.266903	0.438403	0.337012	3.5696	3.41052	0.7058	0	0.669598	1.21752	1.25402	1.81867	0.400387	0	0	0.330201
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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