TCONS_00068348 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068348
Unique NameTCONS_00068348
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068348 ID=TCONS_00068348|Name=TCONS_00068348|organism=Clytia hemisphaerica|type=transcript|length=521bp
AAAAAGATAGAAGTTTCGAAATCCATACCTTAAGGATTCGCTAATTGGTC
GTTCACGCCAAGGACTTGGTGGTGGATTATGGCCTTGAATTTCTTTATAT
TGTTGATGGCAGATGTACGCCAAGTCGTTCTTGATCAAACGTACAGCATA
CTCGTAGAGCTTGTCAAAGTTATCAGAGGCGTGAGTGATCTGGTAGGGTT
TGAAGCCTAACCATTCGACCATCTCTAGGATACCACGGAAGAAACGCTCC
TCTTCTTTCTCAGGGTTGGTGTCGTCATAACGCAAGTAAGTGATACCATT
GTTAGCTTTAGCATATCCAAAATTGAAGTTGATAGCTTTAGCGTGTCCAA
TATGTAAGATACCATTTGGTTCAGGAGGGAATCGTGTACGAATTTGTTTT
CCGTAAGTGTCCAAATGTTCTTTCATATGATTCATTGTTGTGGGTGTCAT
AATGTAATTTTCTGTGGTGTAATTCTcacctgaagatttttaaaggAATA
TAAGATCGTTAGCGTTAGCAA
Run BLAST on NCBI

transcript from alignment at scaffold_483:347732..348877+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068348 ID=TCONS_00068348|Name=TCONS_00068348|organism=Clytia hemisphaerica|type=transcript|length=1146bp|location=Sequence derived from alignment at scaffold_483:347732..348877+ (Clytia hemisphaerica)
AAAAAGATAGAAGTTTCGAAATCCATACCTTAAGGATTCGCTAATTGGTC
GTTCACGCCAAGGACTTGGTGGTGGATTATGGCCTTGAATTTCTTTATAT
TGTTGATGGCAGATGTACGCCAAGTCGTTCTTGATCAAACGTACAGCATA
CTCGTAGAGCTTGTCAAAGTTATCAGAGGCGTGAGTGATCTGGTAGGGTT
TGAAGCCTAACCATTCGACCATCTCTAGGATACCACGGAAGAAACGCTCC
TCTTCTTTCTCAGGGTTGGTGTCGTCATAACGCAAGTAAGTGATACCTTG
GAAAAGGAAATGAAGCCGTGAGACAATGGTTGAGAACTCGGCGAAgcctc
gtccaatatcttttctcgcacgcccaatatttttgcatattggattcgac
tttgtccaataactgcttattATTTTACGTGAAATACTTCGAAAAATTCA
ACAGCTTTTAGACAGCTGAggaattgtttccacgaaggcCCATAAGTGGA
CACTTAAAGGGAATGAATGGACTTTAGTCGTGTTTACAGACACCTACGCA
CATAGCTAAAATGTCTGAGGAGTGCAATCAATCATACCCCATAAAGTTAG
TTTCACAACTGAAAGTTGtgcatagcactccttatcacacaTCTAAATTA
CTAACATTTAAAGgttttaggagtgtgattgaccacacgcctggaatttt
caaatgatgcaaCCAAAAACGTCAGGAGAGATTgaagagttttttttctt
cttttttttcgttATGTTGATTTTTGATACTTAATATTAACAAAACTGAG
ACATGAGATACGAAGCTTCGATACCGAAAGTAATTTGTGTAATTTAGGTA
AGATTATTCTAACTCCAGATAAGGAATACAGTGagtttttctcatttcta
gaaCCATCATCAGATACATACCATTGTTAGCTTTAGCATATCCAAAATTG
AAGTTGATAGCTTTAGCGTGTCCAATATGTAAGATACCATTTGGTTCAGG
AGGGAATCGTGTACGAATTTGTTTTCCGTAAGTGTCCAAATGTTCTTTCA
TATGATTCATTGTTGTGGGTGTCATAATGTAATTTTCTGTGGTGTAATTC
TcacctgaagatttttaaaggAATATAAGATCGTTAGCGTTAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042660XLOC_042660Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068348-exon-scaffold_483-1491911889:347732..348023TCONS_00068348-exon-scaffold_483-1491911889:347732..348023Clytia hemisphaericaexon
TCONS_00068348-exon-scaffold_483-1510915933:347732..348023TCONS_00068348-exon-scaffold_483-1510915933:347732..348023Clytia hemisphaericaexon
TCONS_00068348-exon-scaffold_483-1575043694:347732..348023TCONS_00068348-exon-scaffold_483-1575043694:347732..348023Clytia hemisphaericaexon
TCONS_00068348-exon-scaffold_483-1491911889:348649..348877TCONS_00068348-exon-scaffold_483-1491911889:348649..348877Clytia hemisphaericaexon
TCONS_00068348-exon-scaffold_483-1510915933:348649..348877TCONS_00068348-exon-scaffold_483-1510915933:348649..348877Clytia hemisphaericaexon
TCONS_00068348-exon-scaffold_483-1575043694:348649..348877TCONS_00068348-exon-scaffold_483-1575043694:348649..348877Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_483supercontigscaffold_483:347732..348877 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
61.6214	53.3346	14.9825	12.2827	98.5337	74.7284	107.946	119.089	69.7161	87.2047	66.7063	67.8948	67.6485	64.7522	67.0251	79.8368	81.4057	73.8864	37.0313	46.0424	48.6366	50.5171	64.6997	71.7817	87.531	88.714	38.5982	36.6384	52.3663	52.7063
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000924Glu/Gln-tRNA-synth
IPR014729Rossmann-like_a/b/a_fold
IPR020058Glu/Gln-tRNA-synth_Ib_cat-dom
IPR001412aa-tRNA-synth_I_CS
Vocabulary: Biological Process
TermDefinition
GO:0043039tRNA aminoacylation
GO:0006418tRNA aminoacylation for protein translation
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0016876ligase activity, forming aminoacyl-tRNA and related compounds
GO:0004812aminoacyl-tRNA ligase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043039 tRNA aminoacylation
biological_process GO:0006418 tRNA aminoacylation for protein translation
cellular_component GO:0005737 cytoplasm
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016876 ligase activity, forming aminoacyl-tRNA and related compounds
molecular_function GO:0000166 nucleotide binding
Blast
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BLAST of TCONS_00068348 vs. Swiss-Prot (Human)
Match: SYQ (Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 1.064e-73
Identity = 102/150 (68.00%), Postives = 126/150 (84.00%), Query Frame = -3 
Query:   31 GENYTTENYIMTPTTMNHMKEHLDTYGKQIRTRFPPEPNGILHIGHAKAINFNFGYAKANNGITYLRYDDTNPEKEEERFFRGILEMVEWLGFKPYQITHASDNFDKLYEYAVRLIKNDLAYICHQQYKEIQGHNPPPSPWRERPISESL 480
            GENY T  Y++TP TMN +K+HL+  G Q+RTRFPPEPNGILHIGHAKAINFNFGYAKANNGI +LR+DDTNPEKEE +FF  I +MV WLG+ PY++T+ASD FD+LY +AV LI+  LAY+CHQ+ +E++GHN  PSPWR+RP+ ESL
Sbjct:  235 GENYKTPGYVVTPHTMNLLKQHLEITGGQVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKEEAKFFTAICDMVAWLGYTPYKVTYASDYFDQLYAWAVELIRRGLAYVCHQRGEELKGHNTLPSPWRDRPMEESL 384
The following BLAST results are available for this feature:
BLAST of TCONS_00068348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYQ1.064e-7368.00Glutamine--tRNA ligase OS=Homo sapiens GN=QARS PE=... [more]
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