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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068355 ID=TCONS_00068355|Name=TCONS_00068355|organism=Clytia hemisphaerica|type=transcript|length=759bp
TTGTCCTTTCTGAGACTATGTAAACCTAAATCTATTAATTTCATCTTTCT
AGAAGTAAATTAATGAAAAGGAATGCATGGCAGCATCTCGCTACTTGGCA
GCAGCTCAAAAAGCTATTAAACAAGTCGCTAATCACCCGACATTAAAAAA
TTACAACACTACAATTTTATCCCCTCTGAAGGTTGTTGGTGCTACCGATG
AAGGTGTTATAAAGTTCAATTGGAAAGTGGAGGAAAAACATTTAACACCT
GCTGGAAGACTTCATGGTGGATTGACTGCTGGTATCATCGATTTAACTCA
TGGAATTGCAGTGTCCGACTGCACACAAACAGCAACAACATTAGAACTTA
ATATCAATTACATGCGATACGTTCCAAATAATGAATTATTAGACATTGAA
TCTCGAGTGGCTAAACAAGGAAGCAGAATTGCTTTTTTGGAGACGACCAT
TATGGATTCAAAAGGCAGAATCATAGCAACGGGTAAACAAACTGCAATGT
TGGTAGATGTTTCAAAAGCATACGAATTTTCACAGGAagtactctcaggt
gcctaataaccGAATTGGAGAAAGAAAAGTGTTCAAATTTCAATGAACGG
CTGGACGAGGCTGATTGCTCGTATTGTATCGGGGATGGCCTGGTAAATGC
TAtgttgaaaaacttgaaaaatcgaaaaaatcaacGAGGTTGGGAGGCCA
TTAATAGATATATTGAGAGTTGTCACACACAAAACTAATGCTATACAAAC
AATGTCTTT Run BLAST on NCBI transcript from alignment at scaffold_483:561249..563766+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068355 ID=TCONS_00068355|Name=TCONS_00068355|organism=Clytia hemisphaerica|type=transcript|length=2518bp|location=Sequence derived from alignment at scaffold_483:561249..563766+ (Clytia hemisphaerica)
TTGTCCTTTCTGAGACTATGTAAACCTAAATCTATTAATTTCATCTTTCT
AGAAGTAAATTAATGAAAAGGAATGCATGGCAGCATCTCGCTACTTGGCA
GCAGCTCAAAAAGCTATTAAACAAGTCGCTAATCACCCGACATTAAAAAA
TTACAACACTACAATTTTATCCCCTCTGAAGGTTGTTGGTGCTACCGATG
AAGGTGTTATAAAGTTCAATTGGAAAGTGGAGGAAAAACATTTAACACCT
GCTGGAAGACTTCATGGTGGATTGACTGCTGGtatgttttgttttggttt
cgcTTAAAAATCTAAGATTTGGGGATAacaccatagtcattataaaaaac
cccggtctggcaatgtattgttttagctttttgttcaattttcttttgtt
acaaacaaaagacaagttgcgacttgcatactttttgatcacgttaccaa
aatctcctcttgggattggtctatttctATATCACacgatcaaaaagttt
gcaaaataaatcgattttggtacgtaagctccatcttttaacaataaaaa
gagacaaaagccttccagaccagtgtttttataatgactatgataaCACG
TTGTTCCACTTTTAGGACTGCCAGCATTCTGAAAAatgctttaggcgtac
aaactttcacgagcagaaactttcacgattttcgcgaattttggtcTTTT
CGCAAAAGTTAAtgtctttgaaaaattctttacagggtaattcgcgaaag
tttatgcttgcgaaaaatactttttcctcaaattcacgaaagtaaatgtc
gtgaatttcgcgatttgtCGACCTCGCAAAAAGTTTCTGCTAGGGAAGGT
TTGTACGCGTAAAGTACCTGGGAAATGAAACTTGTCCTTGAAAATCCTGG
AAATTCGCTGAAAATCCTAAAAATGTCctggaaaatctttgaaattaaaa
actttgaaatcgaCTTTACTTTCAGATTAGTATACTTTGGAAAATCTTCT
CAACTTTGGTGCTTggtacaaattatttttatactcAGAAAAAATGCCCT
GGAATATCCTTAAAATTTCCATTCAAGGCTGGAAACCCTGACCTTCCATT
TTTAAGGTTTTACAGTATGACCCaaaaaaaagcggacaaatttttataca
aagTGAAATGCTCATAATTTTTGCGAAATGTTATGAATATTTTCATCTCA
AAACCTATTCTATCATCTTGTGAATTtaatatctattgattgaacaaaga
atttcaatcttatttcaattattttaagcCCAGTTTGGATGAtgagtttt
gaagattttactttatataaaaatttgtccgcttacATTGTATGTCCGCT
ATTGTCATCGGATGAGTGTTGAGACGTTGTGTGAAAAGTTATTTGGCTAA
TCTCTCTAAGTTATACTTAAACTGTCAGCACCCCTCTGGTTTGATTGTCT
GTAAGAAAATCACGTctgttttgcaaatttttgagaagtacattaaagga
agaaattttggcgggaagaaaatttggcggattttggtcAAAATCCGTCA
AAtcaagttcccgccaaaattaatttttccgtcatctgccaaattaaatt
cccatcaaaatgtcttttttgttaattttgagcTAACTTGTCAGCACCAT
TTGTTTCGATGAGAAAATCTGTAATGGTAAACGAGGTCATTAGTTTGGTG
ATAGCAGTTGAACAAAAAGGGTTACACGATGAAAATTTGTTAAGTGGATG
CGTTTTTTCGAGTTTAATTCGCATTCCAGCTAAAGTTCTTGCTTCAGCTT
AAAAGTCTACAATCCTTACATAACTCTTTATCACTCCCCCTTCCCCATCT
TCAGTGTTGATTTGGGGTCAGTGGAACTTGCAAGTTTCCTCCCTCCAACA
ATGAAAGTGGGGGAAGGGGGGACTCAGCATGGGGGAATAATTAGTCAGAC
AACAGTTCTGGCCACGATTGTACATTTCGAACtattcattatttttctta
tttgaaaTCTATTACCGTTGATTATTTCTCTAAATTAAAGGTATCATCGA
TTTAACTCATGGAATTGCAGTGTCCGACTGCACACAAACAGCAACAACAT
TAGAACTTAATATCAATTACATGCGATACGTTCCAAATAATGAATTATTA
GACATTGAATCTCGAGTGGCTAAACAAGGAAGCAGAATTGCTTTTTTGGA
GACGACCATTATGGATTCAAAAGGCAGAATCATAGCAACGGGTAAACAAA
CTGCAATGTTGGTAGATGTTTCAAAAGCATACGAATTTTCACAGGAagta
ctctcaggtgcctaataaccGAATTGGAGAAAGAAAAGTGTTCAAATTTC
AATGAACGGCTGGACGAGGCTGATTGCTCGTATTGTATCGGGGATGGCCT
GGTAAATGCTAtgttgaaaaacttgaaaaatcgaaaaaatcaacGAGGTT
GGGAGGCCATTAATAGATATATTGAGAGTTGTCACACACAAAACTAATGC
TATACAAACAATGTCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068355-exon-scaffold_483-1491911889:561249..561529 | TCONS_00068355-exon-scaffold_483-1491911889:561249..561529 | Clytia hemisphaerica | exon |
| TCONS_00068355-exon-scaffold_483-1510915933:561249..561529 | TCONS_00068355-exon-scaffold_483-1510915933:561249..561529 | Clytia hemisphaerica | exon |
| TCONS_00068355-exon-scaffold_483-1575043694:561249..561529 | TCONS_00068355-exon-scaffold_483-1575043694:561249..561529 | Clytia hemisphaerica | exon |
| TCONS_00068355-exon-scaffold_483-1491911889:563289..563766 | TCONS_00068355-exon-scaffold_483-1491911889:563289..563766 | Clytia hemisphaerica | exon |
| TCONS_00068355-exon-scaffold_483-1510915933:563289..563766 | TCONS_00068355-exon-scaffold_483-1510915933:563289..563766 | Clytia hemisphaerica | exon |
| TCONS_00068355-exon-scaffold_483-1575043694:563289..563766 | TCONS_00068355-exon-scaffold_483-1575043694:563289..563766 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_483 | supercontig | scaffold_483:561249..563766 + |
Blast
The following BLAST results are available for this feature:
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