TCONS_00068370 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00068370
Unique Name	TCONS_00068370
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2307

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_483:77882..85088-

transcript sequence

>TCONS_00068370 ID=TCONS_00068370|Name=TCONS_00068370|organism=Clytia hemisphaerica|type=transcript|length=2307bp
AAAAAGCCACAATTAAGATTAATTTGACTGGATTATGATTGGAATTTaac
tttgattttgataattCAACCATTCTTTTAAATTCATCCTAATTCCTCTT
CCAACAGAATAGTAATGAAAATTGATAGAAACACAGATTTCTTAGAATTA
TCAACGAAAAACGTTACGGCAGACGAGGACCCAGAGAGCggcgccatttt
gaaaaaggcGTCATTTATGGACCTAGAAAATTCATCACCCATTAATACAA
ACAACGGTGAACCACCACACAAGAAAGGGCGGAACAACATCCTAAATAAC
AACGAGGTTTTAACGCCCGTTGAAACCACCCAACACGCCCCAAATTACCG
TGTTGACATGAAATTGAAAAGTCCGAGCCCGACTGAGGATGATTATATAA
AATCAGATAAAGTGCACACGCATCACGGTCGTGTTACGCACTATTATCGC
GATGAACCGAAACATGACATGCTTCTCGCTGTCAAGccTTATAAGGAGAT
GGTGACAACGGACCAATCAAGATCGAATTCACCGGCCCATCATCATAGAT
CGATTGGCGAGAGGCGTGGTGAAAAAAGAATGGATGAGCACGCCATCATT
ACGCGCTTGTTTGCCGATGGTCGTTGTCTATGGCCTTCTTGTAATACCTC
GTGTATGGATAAACACGATTTTGTAAGACACTTAGATACAACCCATGCAA
TGGACGAAAAAGCAGCAGCTCAGGCTAGAGTTCAGAAATATGCCGTCGAA
GAGTTGGAGGAAAGGTTATCATATGAACGTTCAAGGCTGTCAGCCATGTT
GGCACATTTGGAATACGCTTCTGATAAAGGGTACGTTCTGCACAAGTCGG
CTCATTCGGCTTCTCCACCACCTCGATCAGGATCCGGACACCATCACCCA
GTCAGTAACGGAGGTGTGGTCTACCTACCCTACCCGCCACCGCCACACCA
TATCCACGCCATCCCCACCCACGTACCCGATGATCGTGTCAGTTCACCTC
ATCACCGTGAAAGAGAAAGAGAGCGTGAGAGAGAACCACGATCTCCACCT
CAATCGAACTCGCCACGAAAACATTCTCACCATAAACCAGCCCCTGGCGG
TCATTACCACTTACCGGCTCCACACTATTACCCAGTCCATCCAGCTTATC
CAATCGGACGGCCCGTAGCTTTAAAACGCGAATCGCCTGGAGACGAAAAA
AGCCCTAAAGATGAGAGATACCCACCGCCCGGATTGATTGCCGCCCACCC
AGAGGAATTAATACATCGACCAGCTATTGAGGCATCAGCACACCCACCAG
GTCCACCATTAACGCCCAAACAAGAAGGCGGATACCACCCTGTAAGGCGT
CGTGGTGAGGCGGCAGCTATGGTTGACATTGGGCATGAACTTCGCACAAA
GGGTAATCTATACCAAGACCCAAACATCAGGCCACCTTACACGTATGCCT
CACTTATTCGACAAGGTGTTTTAGACTCACCTAATGGAGAATTGACTTTA
AACGAAATTTACAACTGGTTTATCAAAAACTTCGCTTTCTTCAGAAAGAA
CACTAGCACTTGGAAGAATGCCGTTCGACACAACTTATCGCTACACAAAT
GTTTTGTTCGAAAAGAAAATCACAAAGGAGCTGTATGGACGGTCGATGAT
GTTGAATTCTTCAGGAGAAGAATGACAAAACCAGGACTACCACGAAGAGA
ATATTACGCGCCCGAAGAACGCCCCAATTCTCCACCCGAAAGTGGTGGTG
AATATGTGACGGATCTTCCATCTATGGCCATGTCAAGAAAGGAAGATTCA
GAAGAAGATAATTCACCGCCACCTCCGCCCACGCAACAACATCACGCTCA
CGAAGAAAACGGTGAACAAGAAAATTCGATGGCAATCAAAGAAGAACGAG
AAGAATACCTCCAGCATGCaGATACAGTGATGGTGACATCTTGAGAGTTT
CAACAGTGTTGCAGTAACAATTATGGAGACTGACAGTTGGAGTTGGTAGT
ACTTGACAATGAATTCAACTTCGAGACCCCTTTTTTGGAAGTTCGTTACT
TAAATTTAGTACTAGCCCATGTTGTATGTTATTTTctaataatatttatt
ttatggACTTTAGAGGATATAAATTTATCTCCTCGAATTTCTCGACAATC
TCTCGAACttgaaaactattttctttttagcatAGAACTTTTTTAAGTGG
GGCAAAAATTTCTGTAGAACCTGTAGAAATCTCAATTTTCAAGAGATACC
TTTTTTTGTTACAGTAATCCTccttttaaaaacctttgtttagtatattt
tgtttta

Run BLAST on NCBI

transcript from alignment at scaffold_483:77882..85088-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00068370 ID=TCONS_00068370|Name=TCONS_00068370|organism=Clytia hemisphaerica|type=transcript|length=7207bp|location=Sequence derived from alignment at scaffold_483:77882..85088- (Clytia hemisphaerica)
AAAAAGCCACAATTAAGATTAATTTGACTGGATTATGATTGGAATTTAAC
TTTGATTTTGATAATTCAACCATTCTTTTAAATTCATCCTAATTCCTCTT
CCAACAGAATAGTAATGAAAATTGATAGAAACACAGATTTCTTAGAATTA
TCAACGAAAAACGTTACGGCAGACGAGGACCCAGAGAGCGGCGCCATTTT
GAAAAAGGCGTCATTTATGGACCTAGAAAATTCATCACCCATTAATACAA
ACAACGGTGAACCACCACACAAGAAAGGGCGGAACAACATCCTAAATAAC
AACGAGGTTTTAACGCCCGTTGAAACCACCCAACACGCCCCAAATTACCG
TGTTGACATGAAATTGAAAAGTCCGAGCCCGACTGAGGATGATTATATAA
AATCAGATAAAGTGCACACGCATCACGGTCGTGTTACGCACTATTATCGC
GATGAACCGAAACATGACATGCTTCTCGCTGTCAAGGTAACTGCAACGGC
AAAATTCATTCAAAATACACCTATTGACATTTTTGCTTAAAAGCTTCGTG
AATTTAGGGTTGGGTTCGAGTTTGCCATGCTCGATTGTCGTCAGATGCTT
GAATATCTGCATTAACATTCTCGCAGATACTAATATTTGACTGTCATCTA
AACCTCGTAAACCCGATTAACGATCCCTTGTTCTCGAAGTACTGCAGGTT
TATTTGAAAGAAAATTCCGGCGAACGATCTTCTAAAAGTCCCTAACTTAT
TCTAGACGTTTATCTTTTTTTCTCGTACGGTAACACATAGTTTGGTTTTT
ACTCGCTAGTAGCAAACCCTGTGCGACAAGTTACACTTTTCTGTAACCCG
AAATTGTCTGCTTCATATTGATTTTAATAATTTATTTTTTTTATTCAGCC
TTATAAGGAGATGGTGACAACGGACCAATCAAGATCGAATTCACCGGCCC
ATCATCATAGATCGATGTATGTATTATTAAGCATCTGACTTGGAAAGTTA
CCCTCGGGCTTTGTTTTTTAAGATTTTGCCTTCCTTTACCCTTTAGCTTT
TTTGACTGTGCTAAATTTCCACCAAAACTTTCATTTTTCTCATCTCACGT
TCAATTACTTAATCTTACCATTGCATAACAACCCCGGGGGGGGGTGCTTA
GGCAAATGGAGGGCACGGTATGTGCCGCCCTTAAGGGTACCTTTTTTGGA
CTTCCAAAGTCCCGCTAAGGGTCGGAAAAATCAGGAAATCTAATTTCAGT
CCCACTAAGGGTCGGAAAATTGGAGAATTTCAACTTTTTACCCCCTGAAA
GATCAAAATTTGGTCAAATTTGGTCAAATTAATCCCGCTAAGGGTCGTGA
AATTCCCAAAATTTTCCTTTGTTTTCTCCTTTTTAGTCCCGGTAAGGGTC
TAAAGTTCGAAAGTCAGCTCGCAACCCTAGTACCCCCCGGGATAACAACT
CTCTTTGTACTGGTTAGAACAAGCATATCATGTCAATGTCGATATATTTT
TTATGATGGTGTGTAGGTGTAACTTCTTTACCCCTGCGTGAGCCTTTTGA
TGTTTACTGATAGCGACATATAATTTTCTCTGGTGTCCATGAGTAACATG
GAGTCTAGGATAAAGGGACAAGCTGGAGTTTTTACAAGCTCTTTCTTGAT
TTGGTTGGTCGTTAGCCTGTAATAAAACAATTTTGTTACTTTTTCTAAAG
AACGAGTCATCTCTATTATCTTAAATGACCAATTAGTGAAGTACAAAAAC
TATATCTTATAAAAACTCCAGAACATCTCAGGATAAACGGGGACGAGGTT
GTGTTTAGGTAGCAGGTAGACCCTTTCTACAAAAAAAAACAGGCAAATAA
CTGATTCTTCTATTGGTTTATTTTAGTGGCGAGAGGCGTGGTGAAAAAAG
AATGGATGAGCACGCCAGTAAGTTACATTCCATACAAGTACTTGGTTCTT
GCTATTGCACGCCAATTATCTATACAAAACCTAGAGATAACAAAAGTAAA
AAAGTGAATACTTTGTATAATTTACTAACTCCCACTCTCAGAGTAAGACC
TATAGATGCTTATTGTCCATGTAAAGTGTATTTTTTCTATTTTATACTAC
CGTTGACGCTCTCTTATTCGACGTTGTACTATTCGATAGGCTCCCTTATT
CGATGAAATTTAAATTCTCCGTCAATAAGAAACTCTCATAAACGACGTTC
TACTATTCGATAAGCTCCCTTATTCGATGAAAATCCGATTCCCCTTGAAG
ATCGAATTAGAGAGCGTCAACTGTATATCCTAACTTATTTTCACTTTTCT
AGTCATTACGCGCTTGTTTGCCGATGGTCGTTGTCTATGGCCTTCTTGTA
ATACCTCGTGTATGGATAAACACGATTTTGTAAGGTAAGCAAATCTAAAG
AACGATAACAATTATTAATGAAAGTTTTTTGTTTCCTTTTCTATGAATTA
GGAATTGTATCATCTTTTATCATATTAACACTATATTTTTCTGGATACTC
ATCTAACACAATCAAATTCCATAGGGTAATCACTTTTTTTGTCATGTTTT
CGCCTTTAATTTTGAATGAGATTCTATTTGGTAACTTAAAAAATGGTTAC
TAACGATTGAGTTAATCGAAATTCAGTACTCATCCACACCTGAAAATTGC
AGTTGTTATTATCCATTGGAACTTGATTTTTACCAAATTTTCCCATGTTG
ACAGTCGTTACATGGAATTAAACGAAATAAAGAGATTTTTACAACCGATG
AACGTTTTCCTTTACGATTTAGACACTTAGATACAACCCATGCAATGGAC
GAAAAAGCAGCAGCTCAGGCTAGAGTTCAGAAATATGCCGTCGAAGAGTT
GGAGGAAAGGGTAAGATGTTTTTAGTTTATCATCTTAGTATCTTAGACCA
TAAAAGGTTTCATGTTTACAACTTTTTGTCTTATGCTTAACTTGAAACTT
CATTCAATTGGAGATGTTTTCTCCAATTGAGTATGTATTGATTGCTTTTA
CTTTCCAAAAGAGGACTCAGGGTAATGTAGAATAGATTTTATAAAGGCTT
CTTTCATTCTTCCTTTTTAGTTATCATATGAACGTTCAAGGCTGTCAGCC
ATGTTGGCACATTTGGAATACGCTTCTGATAAAGGGTACGTTCTGCACAA
GTCGGCTCATTCGGCTTCTCCACCACCTCGATCAGGATCCGGACACCATC
ACCCAGTCAGTAACGGAGGTGTGGTCTACCTACCCTACCCGCCACCGCCA
CACCATATCCACGCCATCCCCACCCACGTACCCGATGATCGTGTCAGTTC
ACCTCATCACCGTGAAAGAGAAAGAGAGCGTGAGAGAGAACCACGATCTC
CACCTCAATCGAACTCGCCACGAAAACATTCTCACCATAAACCAGCCCCT
GGCGGTCATTACCACTTACCGGCTCCACACTATTACCCAGTCCATCCAGC
TTATCCAATCGGACGGCCCGTAGCTTTAAAACGCGAATCGCCTGGAGACG
AAAAAAGCCCTAAAGATGAGAGATACCCACCGCCCGGATTGATTGCCGCC
CACCCAGAGGAATTAATACATCGACCAGCTATTGAGGCATCAGCACACCC
ACCAGGTCCACCATTAACGCCCAAACAAGAAGGCGGATACCACCCTGTAA
GGCGTCGTGGTGAGGCGGCAGCTATGGTTGACATTGGGCATGGTAAGGAA
GACATAGGTTATCGTGAGTTGACGTTCTTCTCTTCTAATTTTTAACTCAG
ACCCCTTTTTTTAGAAGTTTCGTAAAATGAGGTTTTTCAAATTTTTTATA
TAAAACGATTCTCAAGTTTAAATTTTTTTTACAAAGTCACAGTGACTCTA
TTTCGAGTTTTGTATTCTATTTGCAAGTTCGATTTTAATTAGTCTCGTTA
TGCCGTAACATTTCAGTATCATTTAGAATTATGACCCTCTTCAATTCGTT
CAAATACTAAAGATTAACTTTTTCCCCCTTTTTTCACTATCCAGAACTTC
GCACAAAGGGTAATCTATACCAAGACCCAAACATCAGGCCACCTTACACG
TATGCCTCACTTATTCGACAAGGTGTTTTAGACTCACCTAATGGAGAATT
GACTTTAAACGAAATTTACAACTGGTTTATCAAAAACTTCGCTTTCTTCA
GAAAGAACACTAGCACTTGGAAGGTTGGTTTGAGTATTCATTTTTACGGT
ACAGGGAAGGAGGAACTATCTTTTAAGGTTCAGAGATAAAATTTGCATGC
TAAGAAATGGAGAAAATCTACAGTAGCCTCTCGCGTATTCGAACTCCTAT
AATTCGAATCCTTCTACCATTCAAACTAATTCTCAGCTCCCACCAAGGGA
AACCCTCATAAACACTTTCTCTAGTTAGTGAATCTCTCTGTAATCTGAAC
AAAGAATTAATTGGGCTCTTAACTGTAAGATTTTTCATGGTATCATATAT
TTGACCGTATTATAAAAATTCTATTGTATAGAATGCCGTTCGACACAACT
TATCGCTACACAAATGTTTTGTTCGAAAAGAAAATCACAAAGGAGCTGTA
TGGACGGTCGATGATGTTGAATTCTTCAGGAGAAGAATGACAAAACCAGG
ACTGTAAGTTCAATTTGAAATCAATAACGAACCAGGGGGTTCAGGGTTTC
TTTTTAAACTTGTCACGTTTGTCCAAAAATTGTTTAAGGAAGGGAAGCTT
GTTTGTAAGCCGATTCACCACCAAAGACAACTTAAAATAATTTTTCAAAA
TTCATTCTGATTCAGACCACGAAGAGAATATTACGCGCCCGAAGAACGCC
CCAATTCTCCACCCGAAAGTGGTGGTGAATATGTGACGGATCTTCCATCT
ATGGCCATGTCAAGAAAGGAAGATTCAGAAGAAGATAATTCACCGCCACC
TCCGCCCACGCAACAACATCACGCTCACGAAGAAAACGGTGAACAGTAAG
TACAACCTGTAATTTGTCACACGCTTTTGCATTAGAAGTTTGCGAAACTT
GAGCCTTTTGAGTTCACAATTTTTTCGATCTTACTTTCCAACCAGTTCTA
CAATTGTTTGCAATGGTTTATGCCTAGTCCTTTAGTATTCTTGAAACTTG
ACAGATCAAAATCTTGACAGGGGTCTATGAAATTAGCTCGTTTTATAGAT
TTTATTTCAAACATTCCGTCTTCGATAATGCTATTTATACCCATAATGCA
TCGTATAGAGAAAATAAGAACTGCAGTGGATTGTAGATTTCGTTTCAATA
ATACATCACAGAATTTACTAGATTAAAGCACGTGTTGAAATGATTGTTTC
TCGTTTTTGTTTACAGAGAAAATTCGATGGCAATCAAAGAAGAACGAGAA
GAATACCTCCAGCATGCGTAAGTCTACTTTGACCTTCCTTTTTATATATC
AGAAATCCACCATTATGGATTAAAGCAACCGATTCGAAGAGATGATTGGT
TAAGCGAATCGAATGTCTTCCATAATAGTGGGGGTTAAGGGTTAGGGTTT
ACTGAAAACCACTACACGTTTTTTTTTTTATTAGAACCTAGTTTACAAGA
ACATATAGGCTGAAATTCGTCGAAAAATTAAGAACATCTTAAGAACATGC
CCAGCCTCCGTTTGGAAAAAAATGACAAGAAACTACAATTTCTTCCTCTT
TTTAAGCAGTTTTTAACCGAATTTAGGGGTGGATCTTCAAAAGTCGAGTG
TCAAATATTGTCTAAATTTTGCTAAATTTAAGTGCTCTTTATTTTGTATC
ATATTGTCGATTTACAGTAGTCTGAAAAATTAATAACGCATTTAAGAACA
TTTTAGGCTGAAAATTGCTAAAAAAATAAGCACATCAGAGCTCGAACCGG
TGATGGATTCCGGTCAAAGACAATCCTATTATTAAGAATTTTCTGTAGAC
TGGTTGCTGTAGAAATCTTTTCAATAATACTGTGTAATTATAGATTCTGA
GCGGGACTACTTCCTGAAAATCAACATTTTGAGAGCAGTGGCGTTGTGGG
AAAATTTTTCTGGAGGGGCCAAAGTCAATTTTTTTTAAATGGCGCCCCCC
CCCCTCCAATTTTTCAAAGTGGTGTCCCCACCCATCATTTTCTAAACTTT
TACCAAATTCATTTGCCTAGGCATAATGAGGAAGGAAATATTTAGTGGAG
AAAAGTAGATTTATCTTTGATGAATGGAAAAGGGAAAAACAGGCCCCACC
ATGGTTGGGGCCGACTAGAAAATATTTTTAAATCAACTGCCAAGATACCC
TAAATCACTAAATAAAAATAGACAAATTTTACACTTGCTAGAGTGAAATG
AAACTTAAAGAAACAATGTGTTATGCGAGCGAAGCGAGCGAAAAAATAGA
TGTTTTATGATTTCAATATTGTTGTCAGCAGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCA
ATATTGTTGTCAGCAGATTGGTCTTGGGACGCAGTTAGCTTTACATTTAA
TAATGCTATATTGTACACAAAAAAAACTTGTAAATTAGCTAGATATCAAA
AAAGTTACCACTTAACTGTATTGCGAGCGAAGCGAGCGAAAAAAATTGCA
ATTATATTTANNGGGGGGGGCCATGGCCCCCCCGGCCCCCCCTGCCACAA
CGCCACTGTTTGAGAGGTATTAATCTCGGGATATTTCCCAGATTTCAGGA
TTTTTCCTCTTTGTAACCCTCAGAGGGCGACTGAAATTAATACTATTATT
CTTTTTTTTTTCTTTACAGAGATACAGTGATGGTGACATCTTGAGAGTTT
CAACAGTGTTGCAGTAACAATTATGGAGACTGACAGTTGGAGTTGGTAGT
ACTTGACAATGAATTCAACTTCGAGACCCCTTTTTTGGAAGTTCGTTACT
TAAATTTAGTACTAGCCCATGTTGTATGTTATTTTCTAATAATATTTATT
TTATGGACTTTAGAGGATATAAATTTATCTCCTCGAATTTCTCGACAATC
TCTCGAACTTGAAAACTATTTTCTTTTTAGCATAGAACTTTTTTAAGTGG
GGCAAAAATTTCTGTAGAACCTGTAGAAATCTCAATTTTCAAGAGATACC
TTTTTTTGTTACAGTAATCCTCCTTTTAAAAACCTTTGTTTAGTATATTT
TGTTTTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042667	XLOC_042667	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_483	supercontig	scaffold_483:77882..85088 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.982454	1.89425	1.22889	1.96087	22.6145	22.7383	25.3223	25.4542	3.14167	10.2187	8.54052	2.66536	7.67462	7.86977	3.95712	9.91943	34.6211	23.7556	4.1904	6.61939	17.5072	21.1834	6.17671	7.58847	23.7677	28.3256	19.0029	16.6803	4.44973	3.08754

Blast

[Close]

BLAST of TCONS_00068370 vs. Swiss-Prot (Human)
Match: FOXP4 (Forkhead box protein P4 OS=Homo sapiens GN=FOXP4 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.073e-42
Identity = 81/151 (53.64%), Postives = 101/151 (66.89%), Query Frame = 1

Query: 1243 AHPEELIHRPAIEASAHPPGPPLTPKQEG-----GYHPVRRRGEAAAMVDIGHELRTKGNLYQDPNIRPPYTYASLIRQGVLDSPNGELTLNEIYNWFIKNFAFFRKNTSTWKNAVRHNLSLHKCFVRKENHKGAVWTVDDVEFFRRRMTK 1680
            + P+ L+H P    SA  P  PL P   G     G  P RRR        I  EL      Y++ ++RPP+TYASLIRQ +L++P+ +LTLNEIYNWF + FA+FR+NT+TWKNAVRHNLSLHKCFVR EN KGAVWTVD+ E+ +RR  K
Sbjct:  403 SFPDGLVHPPT---SAAAPVTPLRPPGLGSASLHGGGPARRRSSDKFCSPISSELAQNHEFYKNADVRPPFTYASLIRQAILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEREYQKRRPPK 550

The following BLAST results are available for this feature:

BLAST of TCONS_00068370 vs. Swiss-Prot (Human)

BLAST of TCONS_00068370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FOXP4	3.073e-42	53.64	Forkhead box protein P4 OS=Homo sapiens GN=FOXP4 P...	[more]

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TCONS_00068370 (transcript) - C. hemisphaerica