|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068382 ID=TCONS_00068382|Name=TCONS_00068382|organism=Clytia hemisphaerica|type=transcript|length=1678bpRun BLAST on NCBI protein sequence of TCONS_00068382-protein >TCONS_00068382-protein ID=TCONS_00068382-protein|Name=TCONS_00068382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=550bp MNFSILSCCLIFLLSTFTHGQQNGSTTICRMDQMQYVYTPCDKNDNVWRVRun BLAST on NCBI transcript from alignment at scaffold_483:320492..329094- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068382 ID=TCONS_00068382|Name=TCONS_00068382|organism=Clytia hemisphaerica|type=transcript|length=8603bp|location=Sequence derived from alignment at scaffold_483:320492..329094- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_483:320492..329094- >TCONS_00068382 ID=TCONS_00068382|Name=TCONS_00068382|organism=Clytia hemisphaerica|type=CDS|length=26400bp|location=Sequence derived from alignment at scaffold_483:320492..329094- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00068382 vs. Swiss-Prot (Human)
Match: K132L (UPF0577 protein KIAA1324-like OS=Homo sapiens GN=KIAA1324L PE=1 SV=2) HSP 1 Score: 250.366 bits (638), Expect = 5.764e-72 Identity = 161/536 (30.04%), Postives = 242/536 (45.15%), Query Frame = 2
Query: 113 CRMDQMQYVYTPCDKNDNVWRVQIPSTECLIDQPAKPVKGVKCSTTCQAGEFLDINTQKCEQCQDGYFSVGDGKRFSSWDELPQGFKSRGFSDINSYEKT---HKSGKEDPCYYSGWNLKGDYLMSNGSSCRSVLKFETELLKKGNISFTVKSSSDNTLFHVWSEAGGCANPYSNEEITPEDSSESYYTPTEKWTRHTLTLKKGQNTLYFVASHFKSYIETKSGEDYDSQSDNAVLMKDIVVRGYAYSQQCDKCDAGTRSTK-GASVCETCPANTFSTAGSSVCQLCP-KSQYSPPGSDKCIERKPCTKGDYHQFWDNCKSD-KTRKKYEWNDPKTCDETLKGAVKLPADGPLNGTDCLLCKKNYYNE--------------DGRGACKKCPPQTRGAPKFHFKYWKKLPGKMMHLYCLARPETGCKTSQGWTLHDDHISSGLGHADDAELLMYILVPGFT----------SQKSTFKMTYQVVCPSGNCRLRIQTVEAANLIEDIRKVDGNAERSTITHTRLSSAKTRYRITFEK 1630
C+ + YT CD + + WRV IP++ PV+G +C+ +C +GE+L++ Q C +C +G +S+G G +F WDELP GFS+I ++ T + D C S W +G+Y+ SN C L + L K G + F + +N F + + C +E+ T +W H++ LK G N LY+ +G S++ VL+K+I + G AY+ +C C GT S K G+ C+ CP NT+S G+ C C SQ+S GS +C ER PCT DY Q C + KT+ Y+W +PK C E L A++LP G DC C +YN DG C+ CP T A F +K+W LPG M C + C GW + DHI SG G +D+ L++ + +PGF S+ ++ +C S +C L + G E+ TH +A + F++
Sbjct: 61 CQEKDYHFEYTECDSSGSRWRVAIPNSAVDCSGLPDPVRGKECTFSCASGEYLEMKNQVCSKCGEGTYSLGSGIKFDEWDELPA-----GFSNIATFMDTVVGPSDSRPDGCNNSSWIPRGNYIESNRDDCTVSLIYAVHLKKSGYVFFEYQYVDNNIFFEFFIQNDQC------QEMDTTTDKWVKLTDNGEWGSHSVMLKSGTNILYW----------RTTGILMGSKAVKPVLVKNITIEGVAYTSECFPCKPGTFSNKPGSFNCQVCPRNTYSEKGAKECIRCKDDSQFSEEGSSECTERPPCTTKDYFQIHTPCDEEGKTQIMYKWIEPKICREDLTDAIRLPPSG--EKKDCPPCNPGFYNNGSSSCHPCPPGTFSDGTKECRPCPAGTEPALGFEYKWWNVLPGN-MKTSCFNVGNSKCDGMNGWEVAGDHIQSGAGGSDNDYLILNLHIPGFKPPTSMTGATGSELGRITFVFETLC-SADCVLYFMVDINRKSTNVVESWGGTKEKQAYTHIIFKNATFTFTWAFQR 571 The following BLAST results are available for this feature:
BLAST of TCONS_00068382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.