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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068459 ID=TCONS_00068459|Name=TCONS_00068459|organism=Clytia hemisphaerica|type=transcript|length=2045bp
TACAACAAAGACACATTGGAATTTGCCAGAGCCTGTTTCCATATTCTTTG
GACGAGAAAGTTTGATTGAATCTATTCACTTGAAACTTCAACAAAATCAA
GCAATTGTTTTGAGTGAAATGGGAGGTGTGGGGAAAACACAAACCGCTGC
AAAGTTCGTTCAAATGCATAAGGATGAATATCAGAAGATATTTTGGATTT
CTGCTGTCAGCCTCAAGAGATCTCTGAGCGAGATTTTGTGTGCATTTGGT
TGTAAACAACTAATAGCTGATGAACCTTCGATGGAAACTCTGACTTTCAT
TTTCCTCTCTAAGATTTGTGAAGGCTCCAAAGGATTGCTGGTTGTATTGG
ATGACGTCACTGAGGTCACAAAAGACGTCACTTCATTCATTCGaaatgtg
aaagaaaaaatcagcTTATTGTTGACATCTCAATTGAGGGATTGGGAAGA
TTATGGTTTGATTCAAATTGCTGTTCCATGTTTCCAAGAACAAGAATCCA
TTGGTTTCTTACAGAATGAACTTACTACAGCCAAACATCGAGAAATCTCC
ATTTTAGCGAATCGTTTACAATCATTACCTTTAGCCCTTCACCAAGCCAT
TTGTTACATCAAAAAACATAAAGTTCCTCTACACAAATACATCGAACAAT
TTGAAGCATGCAGAAGAAGTGTTTTGGGAATGAAAATCAATTCCTTTACT
GAATATGACAAGACATTGTTGACAGTTTGGGATATGGCTTTCGCGAAGAT
TCGGGTCGAATCAAAGAATGCTCTTTTGGTCTTAGGAATGATGGCTTTCA
TGGACaatcgaaaaatcaataaaaaaacattcagtTATTTTGATAAAGTT
GATGAATTTGAATTAAATGAAATCATCTCACTGCTTGGTCAATATTCATT
GGTCAACGAGCGGAACGAATGTTTAGAAATTCACAGTCTTGTGCAAAAAG
TTATCCGATATCGTATTGAACAGAAACAATTTGTTGAGGATGAATGTCCG
TTGACACTTCTTGAAGATGTTCTTTTGAAAATCGAGGTTTCTATTAAAGA
TTTGGTTGCAAATGATGACTACGAGGATTTATGGTACATTCATGTTTTTT
GTTTGATCATGAGTGGTGCACTTAAAACTATCAACTTTGATGTTACCCGG
GTGTTAAATATCGCCACAGGCAGAATGGAGATGGAGAACTTATACCAAAT
TTCTGAACTTCTTTCAAAAGTGTTGTTAAAACAATATAGGTTGTTTCGAG
ATGTGAAAACTTTTGATATGCTGTTGCATTGTCATCAACATTTCATAAAC
GCGTCAAGGCAGTTAGGTTTACTTAATTTGAATGagatttttgcttttga
agAAGAGTTTTCCACAGAACTTGAAGAACATTCTTTAGAAGTTTACCAGT
GGAAGTTAAAGCAAGCTGATGTATATAATATACATGGAAGAGCGTTGTTA
TGCAATAATATCGTTCGAAATTTATTCAATGAACTGGTCAAGAAGAAAGG
ATTTGATGATATTAAATTAAGATTGGCGAGTTTTTTTACTGTAAGTGATG
TTGAAGCTTTGTTGAATTCCGTTGACACAAATAATCTCAGTGACACGGAC
TTTCTGATATATTATCATGCAAAATGTTCTTTATACATCAAGAACGGTTG
CTTTGATTTGGCTGAACAAGTCATGAAGAATTGGAAAGAACACTTacaca
gaaaatgtttttctcgattATGGCActttaatttcacaaaaaagaatTGC
TTTTTACTTTACAAGAAAGGAAATTACAACGAAGCACTACTAGCTTGCGA
TGAACTTAAACGAGATTTTCTTATTAATGCAGATGTTTTAATTTCGGAAG
CATTGATTTTGATCAAATTGGGAAAGTTTAACGAAGCAGAAGTGCTACTT
GATGACTTTAACCAACGCAATAATGTAATTATCATTGAAATCAGCTCATA
CCTGAAGTTTCGAAAGCACGACTTTGAGGCAGTAGAAAATCTCCTCACTG
ATTGGGAAGATGAGCGTCagtcaaatcttttgtttttggtAAAGG Run BLAST on NCBI transcript from alignment at scaffold_485:90689..92733+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068459 ID=TCONS_00068459|Name=TCONS_00068459|organism=Clytia hemisphaerica|type=transcript|length=2045bp|location=Sequence derived from alignment at scaffold_485:90689..92733+ (Clytia hemisphaerica)
TACAACAAAGACACATTGGAATTTGCCAGAGCCTGTTTCCATATTCTTTG
GACGAGAAAGTTTGATTGAATCTATTCACTTGAAACTTCAACAAAATCAA
GCAATTGTTTTGAGTGAAATGGGAGGTGTGGGGAAAACACAAACCGCTGC
AAAGTTCGTTCAAATGCATAAGGATGAATATCAGAAGATATTTTGGATTT
CTGCTGTCAGCCTCAAGAGATCTCTGAGCGAGATTTTGTGTGCATTTGGT
TGTAAACAACTAATAGCTGATGAACCTTCGATGGAAACTCTGACTTTCAT
TTTCCTCTCTAAGATTTGTGAAGGCTCCAAAGGATTGCTGGTTGTATTGG
ATGACGTCACTGAGGTCACAAAAGACGTCACTTCATTCATTCGaaatgtg
aaagaaaaaatcagcTTATTGTTGACATCTCAATTGAGGGATTGGGAAGA
TTATGGTTTGATTCAAATTGCTGTTCCATGTTTCCAAGAACAAGAATCCA
TTGGTTTCTTACAGAATGAACTTACTACAGCCAAACATCGAGAAATCTCC
ATTTTAGCGAATCGTTTACAATCATTACCTTTAGCCCTTCACCAAGCCAT
TTGTTACATCAAAAAACATAAAGTTCCTCTACACAAATACATCGAACAAT
TTGAAGCATGCAGAAGAAGTGTTTTGGGAATGAAAATCAATTCCTTTACT
GAATATGACAAGACATTGTTGACAGTTTGGGATATGGCTTTCGCGAAGAT
TCGGGTCGAATCAAAGAATGCTCTTTTGGTCTTAGGAATGATGGCTTTCA
TGGACaatcgaaaaatcaataaaaaaacattcagtTATTTTGATAAAGTT
GATGAATTTGAATTAAATGAAATCATCTCACTGCTTGGTCAATATTCATT
GGTCAACGAGCGGAACGAATGTTTAGAAATTCACAGTCTTGTGCAAAAAG
TTATCCGATATCGTATTGAACAGAAACAATTTGTTGAGGATGAATGTCCG
TTGACACTTCTTGAAGATGTTCTTTTGAAAATCGAGGTTTCTATTAAAGA
TTTGGTTGCAAATGATGACTACGAGGATTTATGGTACATTCATGTTTTTT
GTTTGATCATGAGTGGTGCACTTAAAACTATCAACTTTGATGTTACCCGG
GTGTTAAATATCGCCACAGGCAGAATGGAGATGGAGAACTTATACCAAAT
TTCTGAACTTCTTTCAAAAGTGTTGTTAAAACAATATAGGTTGTTTCGAG
ATGTGAAAACTTTTGATATGCTGTTGCATTGTCATCAACATTTCATAAAC
GCGTCAAGGCAGTTAGGTTTACTTAATTTGAATGagatttttgcttttga
agAAGAGTTTTCCACAGAACTTGAAGAACATTCTTTAGAAGTTTACCAGT
GGAAGTTAAAGCAAGCTGATGTATATAATATACATGGAAGAGCGTTGTTA
TGCAATAATATCGTTCGAAATTTATTCAATGAACTGGTCAAGAAGAAAGG
ATTTGATGATATTAAATTAAGATTGGCGAGTTTTTTTACTGTAAGTGATG
TTGAAGCTTTGTTGAATTCCGTTGACACAAATAATCTCAGTGACACGGAC
TTTCTGATATATTATCATGCAAAATGTTCTTTATACATCAAGAACGGTTG
CTTTGATTTGGCTGAACAAGTCATGAAGAATTGGAAAGAACACTTacaca
gaaaatgtttttctcgattATGGCActttaatttcacaaaaaagaatTGC
TTTTTACTTTACAAGAAAGGAAATTACAACGAAGCACTACTAGCTTGCGA
TGAACTTAAACGAGATTTTCTTATTAATGCAGATGTTTTAATTTCGGAAG
CATTGATTTTGATCAAATTGGGAAAGTTTAACGAAGCAGAAGTGCTACTT
GATGACTTTAACCAACGCAATAATGTAATTATCATTGAAATCAGCTCATA
CCTGAAGTTTCGAAAGCACGACTTTGAGGCAGTAGAAAATCTCCTCACTG
ATTGGGAAGATGAGCGTCagtcaaatcttttgtttttggtAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068459-exon-scaffold_485-1491911889:90689..92733 | TCONS_00068459-exon-scaffold_485-1491911889:90689..92733 | Clytia hemisphaerica | exon |
| TCONS_00068459-exon-scaffold_485-1510915933:90689..92733 | TCONS_00068459-exon-scaffold_485-1510915933:90689..92733 | Clytia hemisphaerica | exon |
| TCONS_00068459-exon-scaffold_485-1575043694:90689..92733 | TCONS_00068459-exon-scaffold_485-1575043694:90689..92733 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:90689..92733 + |
Blast
The following BLAST results are available for this feature:
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