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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068483 ID=TCONS_00068483|Name=TCONS_00068483|organism=Clytia hemisphaerica|type=transcript|length=774bp
ACGACCGAAAATAGACAAGCAATATATGACGTCGCACAAGTTATTGCCTT
ACCCTTTGTAAGTTAGTTACCTTTTGTTCGATCAAGCTACGAAAGACAAC
GACGTCGCCCTTCTTCGGTTGTCCAAACCTATCGATTTTCAGAAGACCCC
TGGCGTGTTAGCAATCAGCCTTCCACTATCAGAAGCACGGAACGAATAGC
GTTGTTTCAGGGAGCTGCACCTGATGAGACGGTGAATGTTTCGAACTTTT
GCGTATCTGGTCAGCGGATGTACGGTAGATTTCAGTGATCACTTTGTTTG
CAATAATGCAATAATGAATTGCACGGAATGGTGAGTTGGAACCAGAACAA
ATTTGTTTATGTTCAAAAATAGAATACCTTTAAGGTGAAAATCACATGTG
GTGTACGCAACGGAGTGCACAAATTCCGATTCTTTTTATATGGGAAAGAA
CAGAAACGAGGTACAAAGAATACCCTTCGTAGCAGTCAGCTGTTGTGGAG
CATCTATTGTTAACTGGGCATGCCTCTCTtgttaatttaaaaatttacgC
TAATAGTAATagaaagtttaaaagtttaCGACCGGACTTGAATGAAAAAG
TTGCGTATCCCCTTGAGCTTTtctagtttttctttttgtattgTTCTATG
TGAAGTGTTTATTTACCTATAATTATTGCTGTGATTTATCATAAATTTGT
GCCAGTTTCAACtttgtggaatttttttttcatatagtATTGTGATCATG
ATAAAAAGAAGTCatcaaaacgtc Run BLAST on NCBI transcript from alignment at scaffold_485:143442..148430+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068483 ID=TCONS_00068483|Name=TCONS_00068483|organism=Clytia hemisphaerica|type=transcript|length=4989bp|location=Sequence derived from alignment at scaffold_485:143442..148430+ (Clytia hemisphaerica)
ACGACCGAAAATAGACAAGCAATATATGACGTCGCACAAGTTATTGCCTT
ACCCTTTGTAAGTTAGTTACCTTTTGTTCGATCAAGCTACGAAAGACAAC
GACGTCGCCCTTCTTCGGTTGTCCAAACCTATCGATTTTCAGAAGACCCC
TGGCGTGTTAGCAATCAGCCTTCCACTATCAGAAGCACGGAACGAATAGC
GTTGTTTCAGGTAAGATAGTCATTCCCATTTAATAGATGTATTTCAACAC
TGTATTCATCCACTAAAGTCATTTtcttacagtcaactctctctaattcg
aacctctacaatTCGATGTAAGACAATTCGTCGCCTTAGCTGGAGAGTAG
TGCGAAACGCCTCCATGATTCGAATTTCTTTACTACTTCCacagaaaaaa
atgatcttATCCCAAGGTtggaactttttatttttccgcccCGGATATTT
GTAACTTTCCGACCCGGAAAATGCCATGGGATCGTGAAACACCCACCAAG
CTAAATTCCGTGTTGGAAAATTTTTAGTTTCCAAGGTGCGAAATCTTCTA
ATTCCGACTCGGAAAACAAATTACTAGAAAATTCAAAGGTTGTATTTCGT
CAAAACCCGGCAAGAAAACCGTGATTTCCAATGTAAGGTTTTTGAAAATG
CGGGTTGGAAAAAGTGGATATTCCAGACATTGTCAATATTATTCTGAATA
TTCATATTGGAAAAAGCCCGAAACGCAAGGTCGGAAGTTTGGATATCACA
CATTTTCCAAGTTACGAAATTGTCAAATTCCGGTAAGAAAACAGTGATTT
CCAACGTAAGGATTTGAAAATGCGGGTCGGAAAAAGTTGATATCCCAGac
attgtcaaaaatattttgaataattatatTGGAAAAAGCCCGAAACGCAA
GGTCGGAAGTTTGGGNCCAGacattgtcaaaaatattttgaataattata
tTGGAAAAAGCCCGAAACGCAAGGTCGGAAGTTTGGGTATCACACATTTT
CCAAGTTGCGAAATTGTCAAATTCCGGTAAGAAAACAGTGATTTCCAACG
TAAGGTTTTGAAAATGCGGGTCGGAAAATAGATAGTCGATTTAAATAGAA
AATGCTCTGACCCatcaaggttggaaatttgaaaaatttgcagCTATCGT
AAAGTCGATGATGACCTttataaagaaaattgatatgatTGGAAATTAAG
CTAAATTCATTTAATTAAGAAATGGCTAAAAATAAGGTAGATCGGAAAAA
TCTACTCATTAAATTTTCAACGTTGTatttaatttagaaatattattttc
aattagaATTAAAAAGTTATGTAACATTagcataaataaaaaatcttatc
aGATTAGTTAGCAAAAATAATACATCTTGATTAATAACATACAATGTGGT
GTAGAAATTTATAAATATTAGCTTCAATTAGAATTAAAAAGGTATATGTA
ACACAAgcatgaataaaaaaaatcttatcagATTAGTTAgcaaaaataat
aaatcttGATTAATAACATACAATGAATGTGGCGTAGAAATTTATAAATA
TTAGCTTCAATTAGAATTAAAAAGGTATATGTAACACAAgcatgaataaa
aaaaatcttatcagATTAGTTAgcaaaaataataaatcttGATTAATAAC
ATACAATGAATGTGGCGTAGAAATTTATAAATATTAGCTTCAATTAGAAT
TAAAAAGGTATATGTAACACAAgcatgaataaaaaaaatcttatcagATT
AGTTAgcaaaaataataaatcttGATTAATAACATACAATGAATGTGGCG
TAGAAATTTATAAATATTAGCTTCAATTAGAATTAAAAAGGTATATGTAA
CACAAGCATAAATAAACAAATCTTGATTTATAACATACAATGTGGCGTAG
ACAAATACTtacaacattcacaaaaaacaaaataacaTAACAAAGCTTGA
CGATTCATAAAGAGATAATGTTGTACACATCTATCATTTAAATTGCAACG
AAATTAGACTAATGAATATACGAGAAAAATGCGAAGGAATGttgtaaaat
ttaaaatggtTCAAAGACACGAAAAGTTTAAACAAAGAGAGTACATAAAA
GATTATTTACAATTATTTTCTAAATTAGTTAGTCTTCTGCCCTTTCCAAT
CCACAAACACAATAACATTGTCTTTGTCATCGACTGGTGTGTCGATGACC
GCAGCCAAGCGCTTGTCTATAACTGCCTTGGCAAATTCTTGCACTGCAGC
TTTATCCTTTAGGGTCGGGTTCAGTCTTATGTCCAAATCAAACGCCGCTT
GGTTTATGACTGAACGCTTCAGTTTGCTTACTTGACAGTAAATTCTTGCC
ACCCCATCTAGGTCTTTTTCACTTAAAtctaaaatcaagaaaaagaatga
attaaaacattgaaaaaaaaaacaatcggTAAAAATTCTACTTTATTACA
TGTATTCCATAATATTGGACTGCAAAACGTTTTTCACACAGTAGAAAATT
AGAAGAATAACGCACCTTTTAAAGGCACTTCCTTGGGTTTGCCTGATCTC
TTCTGTGTTTGTGTAACTAAAAAAAgcagtgaaaaaattaaatatgaaat
aaaatgttGGCACAACAAAAAAATACTTGTTTTTGATACTAAATTTATTA
CAAGCAGTTACAAGACCCATTCTATTGATTTAACAGTTTAAAAGAGAGTA
GTTGTGACAATTGCAGAACAACTTACAACTAATATCATAAGCAGATTCAC
TTTCCACATTCTTAGGCGGAGGAGTCTAAAAAGGAAACAAAGAAAGCATG
TATTTATATAAGAAAAGCAAAGTAACAACCATGACAGTCAGCAGGTGTCT
GCAAATTATTATAAgaagataccttaagggaacttattttggcaggaACT
AAGCCCAAAATAAAGAGGAATTAAGGTAATGTTAATATGCCGAAATCTTG
AATTCAAATAAAAGGTCTTAGTCCCATTaagatcgaattaaagagagaaa
cAGCTGAATTTCTAATCACTCTTTTTCTCTAGGATGGGGATTTAGACAGA
TTCGTCGAATGAGTGATACCCTCCAATAATACACCATGCCTATCTTCGAA
CGCGACGTTtgcaaaaatttcatgaaagaaagttaattctCAAGCGCCTT
TTCTTGTTGACATGACGACGTGAAATAAGTAATTTTGTTATTGTCTAATT
CACGGACCATTGTCTGATACAAAGAACAATGTAGTTACTGCAACTCATTC
ACTAACTGATGAGTACATAGGTTCCAAAGCACcggaccccgagaatgtag
taaaccccgagaatttaggtttcttattttttagcattgtagcctTAACG
ATAGTTCGACTTCATGCaaagttgtttcagagcatactTTTACATATTAC
TTAATATTtctagacataaaattttaacttgaataaattttttctagCGA
AGNTACATATTACTTAATATTtctagacataaaattttaacttgaattaa
ttttttctagcgaaatctgaatcgaagttgatcgaaatctcttggaatta
agttatgatgatagggtattttcttattcctaatgaactaaggaaatggg
gaaaatagtccatttcaatatttatttttctaagttagatattttgacga
aaatgtttgacctacctttGGGGTTAGTtttccattgggactttagtaga
aatttttggacCCGATAtgagaaaaagttccaccggggctgtgaggcagg
ggtgttgttacattattcacatattttaacacaaaattttcaacctacaa
aataaaaacaactgtCTAGTCTCTTTTTTCGTCCTTTTTTTTACTCATCA
TCATgttgtagcacgataaaattaatatctttgttaattttttgtcagag
tatatttctaaagtatgaatttcacttagagaacaataaCTTCCGATGAA
TACTGGAATTCCGCTCtcaacaaccgaatcttttcacctacattctgggg
gttaaaatgtgaaaaaatccaatttccaGAATAACAAAATagtctttaga
atattgttttggtatataatatttctaaaatttgctgttataattaatcc
aatttaaaaaatataaacattttacTAATACTaaatttaaagccataaaa
ccaaacctacattctgggggttataacgaaaaagggagtcaacttcaagg
accaaaacaattagcctatctatcaaaagtaatgaaactaaccccatGGG
AAAGGATTTCGGGAGTTCAAGATTTCGTTGGAAACGTTCAATGTTTTTTA
atatgcaaatctacatctttcaggtctgattcaaatttcacctacattct
cgtgGTTAGGTGCTGTATCTATGAGTTGAGCAGAgggtttttttgaaatt
atttgattTTCTACTTTTCTTCAAGGGAGCTGCACCTGATGAGACGGTGA
ATGTTTCGAACTTTTGCGTATCTGGTCAGCGGATGTACGGTAGATTTCAG
TGATCACTTTGTTTGCAATAATGCAATAATGAATTGCACGGAATGGTGAG
TTGGAACCAGAACAAATTTGTTTATGTTCAAAAATAGAATACCTTTAAGG
TGAAAATCACATGTGGTGTACGCAACGGAGTGCACAAATTCCGATTCTTT
TTATATGGGAAAGAACAGAAACGAGGTACAAAGAATACCCTTCGTAGCAG
TCAGCTGTTGTGGAGCATCTATTGTTAACTGGGCATGCCTCTCTtgttaa
tttaaaaatttacgCTAATAGTAATagaaagtttaaaagtttaCGACCGG
ACTTGAATGAAAAAGTTGCGTATCCCCTTGAGCTTTtctagtttttcttt
ttgtattgTTCTATGTGAAGTGTTTATTTACCTATAATTATTGCTGTGAT
TTATCATAAATTTGTGCCAGTTTCAACtttgtggaatttttttttcatat
agtATTGTGATCATGATAAAAAGAAGTCatcaaaacgtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068483-exon-scaffold_485-1491911889:143442..143651 | TCONS_00068483-exon-scaffold_485-1491911889:143442..143651 | Clytia hemisphaerica | exon |
| TCONS_00068483-exon-scaffold_485-1510915933:143442..143651 | TCONS_00068483-exon-scaffold_485-1510915933:143442..143651 | Clytia hemisphaerica | exon |
| TCONS_00068483-exon-scaffold_485-1575043694:143442..143651 | TCONS_00068483-exon-scaffold_485-1575043694:143442..143651 | Clytia hemisphaerica | exon |
| TCONS_00068483-exon-scaffold_485-1491911889:147867..148430 | TCONS_00068483-exon-scaffold_485-1491911889:147867..148430 | Clytia hemisphaerica | exon |
| TCONS_00068483-exon-scaffold_485-1510915933:147867..148430 | TCONS_00068483-exon-scaffold_485-1510915933:147867..148430 | Clytia hemisphaerica | exon |
| TCONS_00068483-exon-scaffold_485-1575043694:147867..148430 | TCONS_00068483-exon-scaffold_485-1575043694:147867..148430 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:143442..148430 + |
Blast
The following BLAST results are available for this feature:
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