TCONS_00068491 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00068491
Unique Name	TCONS_00068491
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1017

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_485:229236..232913+
coding sequence from alignment at scaffold_485:229236..232913+

transcript sequence

>TCONS_00068491 ID=TCONS_00068491|Name=TCONS_00068491|organism=Clytia hemisphaerica|type=transcript|length=1017bp
cttttctatttgaaGGCTCAGCAAGAGAAATTATACCAAGAATATTCAGC
GAAGAAGACAAAAGAATCGAGTGACAAGTTAGAAGCTTATTATGAACAGC
TCGTCAACAAATTACAGTCAGAAATGAAATCAATCAAAGTTGACTTGGGT
GccaaaacgcAAGATTTGGGCGAGACAAAGCAGCGTTTCAATGAACTGAA
AGAACAACATCAAGAGAAATCCAGACAACATCAAAAACTTCAGataatgT
ATGATACACTCAGAAGGCGATCAATCAATCCAGCTAGTTTGAAAGAATTT
CAAGAGAAAGGAGCACCACCTAACAATACAACCAACGAAAAATTAGAACA
ACAACAAAATGCAAATtccaaattctttcaaatgagTATGGGTACTAATT
TCTTGGGATCGACGCGCAACATCCACGCATGCGTGCAAGAAGCCCACCAA
TCACTATTCGCGACATTTCCATTTGCTGCTAAACATCCAAACGAAACTCG
ACCCAGTTCCCCTCCTACCACTGATActGGATTTGTGATGAAGCCTTTCC
CAACACCTCAAGCCCCTCAAGAGGGAACAGATTTCGGTCAACGCTTCACC
CTACAGCTGAATACACCTCGGACCAAATAAAAGTGTTACTGATTGCCTTG
TTATTCGAATTCCTACGAAATGGTAATGATATCGTGGAAAAGCTTTCAAT
ATAATTAGTTGATAATTGGtagtaaattgccaattacaaGTTGCTTTCTT
ATGGGACAGTTTGTTTTTTGGTTTGCCATAATGTTGTGTTTAGTGTATCG
CGTTAAGAATTGTACATAGAGAAATTTTCGGTTTGTATTTATGTTCTGTT
TAATTGAAGATATTTGTGTGTTTTTAGCGGAAATAAGATATTCTTCGGAC
GGCATACTTCTGATGGTTTtcctttttttggacctaccccggtgggctgt
aggtcctataaattaacctctgttcgtccgttcgtccgttcgttactagc
ttttctcgggattggct

Run BLAST on NCBI

protein sequence of TCONS_00068491-protein

>TCONS_00068491-protein ID=TCONS_00068491-protein|Name=TCONS_00068491-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
LFYLKAQQEKLYQEYSAKKTKESSDKLEAYYEQLVNKLQSEMKSIKVDLG
AKTQDLGETKQRFNELKEQHQEKSRQHQKLQIMYDTLRRRSINPASLKEF
QEKGAPPNNTTNEKLEQQQNANSKFFQMSMGTNFLGSTRNIHACVQEAHQ
SLFATFPFAAKHPNETRPSSPPTTDTGFVMKPFPTPQAPQEGTDFGQRFT
LQLNTPRTK

Run BLAST on NCBI

transcript from alignment at scaffold_485:229236..232913+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00068491 ID=TCONS_00068491|Name=TCONS_00068491|organism=Clytia hemisphaerica|type=transcript|length=3678bp|location=Sequence derived from alignment at scaffold_485:229236..232913+ (Clytia hemisphaerica)
cttttctatttgaaGGCTCAGCAAGAGAAATTATACCAAGAATATTCAGC
GAAGAAGACAAAAGAATCGAGTGACAAGTTAGAAGCTTATTATGAACAGC
TCGTCAACAAATTACAGTCAGAAATGAAATGTATCCTTTCCGAAGACAGT
GTCTGTGTTTTAAGTTTTCAAGACAATTCAGAAATGTACAGGGTCTTTGC
CAATAGTGCGTTTGTGTGCTTCAGTGAAAGTTCTGATAGGAATTTGAAAA
CGTAGAGAATCTTTGGATAGAGGAAATTCGGGGAAGAGTTTATCACTACA
ATATTTTTTAATGAGGGATGTCTGTTTAATTCAAAACTCGAGAGACTCTA
AATTCGTTGATTTGAAGACTCTGTCTTGAATGAAGGTTTATTTAATGAAG
TGTGGCAGATTGAAACAGATTTGAAAGGAGAGTCCTTGACTAATAATCTT
GCTTTGAAAAGCAATCAAAGTTGACTTGGGTGGTAAGTGTACATAACTCT
TTAGAACTTTTTAAGAATGAAAGACTTTTCAGTATTTTCAGTATGACATA
CATACAAAGATCTTTAATAGAAATATTTCAAGGTATAGACTCGTGACTTT
TTAGCGATTTCTTGCAGTGCATTGTAAAATGAGATGGTTGTTaacttttc
agccaaaacgcAAGATTTGGGCGAGACAAAGCAGCGTTTCAATGAACTGA
AAGAACAACATCAAGAGAAATCCAGACAACATCAAAAACTTCAGGTAAAT
TCTTCTTCCTTGCATCATAGTCCACAAAGTCATGGGatcccccaggaaga
tgggggaATCAACTTTTATCCTGGAGAGGAAAGTGAATATTTTCACCTTA
ATGGGGGACTAATGCAAATGAGGGATTTCAGGATATTTTATGGGAAGTGG
GGGTAGAAATTGCAGTAGTtagatataatatttcaaatagGTCACTAAAA
TACTTTTCCAATGAGGGGAACCCCGGAAAAAGGGTAGGTGGGGGAGAAGA
CCAGATGGGGGTTTTAGGCCCCAGATGGGGGGACCTGAAAACCTGGAGGA
CACCATGAAAGTGAAAAAGGGGGATTGAAAATTTCCCTAAAGAAAGAGGA
TCTCATGGAAAAGGATCAATTGAAAAGTGGATCACTCCTCTTCGTGTAAT
GTGGAAAATTTTACATGTTACTTAACTTTAACATGAAATCGTTTTTGCag
aattaagggctctgaccatagtgaatttttcataattgccgtgtttaaaa
tgtgttttctgactgatgtaaccagcaaaattatggcatgttatactttc
tgttagacaaactattcctgaatctgaaaattaaaaaattgcattgaaaa
atttgatgaagaagaaaatgaagacttttgcgaggaagagtatttcaact
ttgaagagcttagtttcggcgaagaaaaaacattttgaaaaaattttcgc
agtagatggtgtatctttaaccgAACAgtaaaatttttgcggaaaatttt
tgtaaatgcttctttgtctcgaaatcttcaaaatagtggtttttaatcaa
tttttaatctggcttttgcttaaaaaaacaatcataacttttgacacatc
tttttagaaatattttccgCAAagtttaaaatagttcaattctttgcgta
aagtttgaaaaaagttcgaaacaaaaaggttaattacactttttataaaa
gaaggtgatgcaacgtATTATttacgtctttttaaagttcataacgtcat
ttttgcaattaagctcttaattgattaaaaagcaatttataaaggcaatt
ctttgttgaaagtgttaaagaatctaaaacataacttttatgttcagata
ctaaaatcaattttctgactatggtcagagcccttaagtgaaAGTTCTCT
TCTCAGTTTTCTACATATTGCTACAGAAGTTATAAATTCATAAATGAAGT
GTTCGTTTAGTGTtggtatttcttttttttttcagataatgTATGATACA
CTCAGAAGGTAATCCATTTGTAATTATAAAGTGGGTACTTCCTCTTTGGC
TTCCTTAATACGTAGAAAGTAGACCTAAATTTTACACTGTTCATTATACT
ACCCCTTTTACCCTGTGATGGAAAAGATGTCCTTATCGCCTGAAAAATGC
GTATTGGCTAAATAACCAAATTATGTCGAGTACGGGTGGTGTTGAAATTT
CGCTTTGAAGAATCTTTTCGAATTCTTGACATTCATGACGTGATCTTTTA
TACGAAAAACCCGAAAATCACCGGGCGTTTGCCATCAGTTTCATTGTTAA
AATTCTAAACTGGTGGCACACACCCGGTgctttttgggtgcttccgtata
aaagattgcGTCACGAATATCAAAAATGGGTGGACCAAGATCGGGTGATT
AGTAATGATGCTTACAATTTGCTTTCATTACGGACACTTGTGATTATTTT
TCCCGGACAGGCGATCAATCAATCCAGCTAGTTTGAAAGAATTTCAAGAG
AAAGGAGCACCACCTAACAATACAACCAACGAAAAATTAGAACAACAACA
AAATGCAAATtccaaattctttcaaatgagTATGGGTACTAATTTCTTGG
GTAAGTAGAGATTTTCTATAAATTGCACGTCTACTTTCGTTGGAAAATGT
TTACAGCTGAATTCTGGTCacgtaaatttaaaaaatagaaaaaattgaag
aCATAGCTCCGGGATGCTTCTACCGAAAGCACCCTACAGCTTCGAAAACT
TCATCGCAATGAACCAGCCCTATATCAACCGAACCGAAATTTCTTTCAGG
ATCGACGCGCAACATCCACGCATGCGTGCAAGAAGCCCACCAATCACTAT
TCGCGACATTTCCATTTGCTGCTAAACATCCAAACGAAACTCGACCCAGT
TCCCCTCCTACCACTGATAGTAAGAGAATTTTGGTCTCTGAATCTTCTCC
TATTCAAAAGCTTTGGTCAATCCAGGAATTCGGGAACTAACTtagtgaaa
taaattttttcattcGGTTTTTTAATTGTATCTCAACACTTCAGTTAAAA
ATCTATCCCTTGTGATTCCATAGTTTCTCACACTGAGTATTTTTCTCTCA
TTGATCCTTACAGTTGTCTGGCCCTCACACACCTTTCCGCATTTAGCCGA
CCGTTGACTATGTCtactaatttatttatttttttagctGGATTTGTGAT
GAAGCCTTTCCCAACACCTCAAGCCCCTCAAGAGGGAACAGATTTCGGTC
AACGCTTCACCCTACAGCTGAATACACCTCGGACCAAATAAAAGTGTTAC
TGATTGCCTTGTTATTCGAATTCCTACGAAATGGTAATGATATCGTGGAA
AAGCTTTCAATATAATTAGTTGATAATTGGtagtaaattgccaattacaa
GTTGCTTTCTTATGGGACAGTTTGTTTTTTGGTTTGCCATAATGTTGTGT
TTAGTGTATCGCGTTAAGAATTGTACATAGAGAAATTTTCGGTTTGTATT
TATGTTCTGTTTAATTGAAGATATTTGTGTGTTTTTAGCGGAAATAAGAT
ATTCTTCGGACGGCATACTTCTGATGGTTTtcctttttttggacctaccc
cggtgggctgtaggtcctataaattaacctctgttcgtccgttcgtccgt
tcgttactagcttttctcgggattggct

Coding sequence (CDS) from alignment at scaffold_485:229236..232913+

>TCONS_00068491 ID=TCONS_00068491|Name=TCONS_00068491|organism=Clytia hemisphaerica|type=CDS|length=4410bp|location=Sequence derived from alignment at scaffold_485:229236..232913+ (Clytia hemisphaerica)
cttttctatttgaaGGCTCAGCAAGAGAAATTATACCAAGAATATTCAGC
GAAGAAGACAAAAGAATCGAGTGACAAGTTAGAAGCTTATTATGAACAGC
TCGTCAACAAATTACAGTCAGAAATGAAATCAATCAAAGTTGACTTGGGT
GccaaaacgcAAGATTTGGGCGAGACAAAGCAGCGTTTCAATGAACTGAA
AGAACAACATCAAGAGAAATCCAGACAACATCAAAAACTTCAGataatgT
ATGATACACTCAGAAGGCGATCAATCAATCCAGCTAGTTTGAAAGAATTT
CAAGAGAAAGGAGCACCACCTAACAATACAACCAACGAAAAATTAGAACA
ACAACAAAATGCAAATtccaaattctttcaaatgagTATGGGTACTAATT
TCTTGGGATCGACGCGCAACATCCACGCATGCGTGCAAGAAGCCCACCAA
TCACTATTCGCGACATTTCCATTTGCTGCTAAACATCCAAACGAAACTCG
ACCCAGTTCCCCTCCTACCACTGATActGGATTTGTGATGAAGCCTTTCC
CAACACCTCAAGCCCCTCAAGAGGGAACAGATTTCGGTCAACGCTTCACC
CTACAGCTGAATACACCTCGGACCAAATAActtttctatttgaaGGCTCA
GCAAGAGAAATTATACCAAGAATATTCAGCGAAGAAGACAAAAGAATCGA
GTGACAAGTTAGAAGCTTATTATGAACAGCTCGTCAACAAATTACAGTCA
GAAATGAAATCAATCAAAGTTGACTTGGGTGccaaaacgcAAGATTTGGG
CGAGACAAAGCAGCGTTTCAATGAACTGAAAGAACAACATCAAGAGAAAT
CCAGACAACATCAAAAACTTCAGataatgTATGATACACTCAGAAGGCGA
TCAATCAATCCAGCTAGTTTGAAAGAATTTCAAGAGAAAGGAGCACCACC
TAACAATACAACCAACGAAAAATTAGAACAACAACAAAATGCAAATtcca
aattctttcaaatgagTATGGGTACTAATTTCTTGGGATCGACGCGCAAC
ATCCACGCATGCGTGCAAGAAGCCCACCAATCACTATTCGCGACATTTCC
ATTTGCTGCTAAACATCCAAACGAAACTCGACCCAGTTCCCCTCCTACCA
CTGATActGGATTTGTGATGAAGCCTTTCCCAACACCTCAAGCCCCTCAA
GAGGGAACAGATTTCGGTCAACGCTTCACCCTACAGCTGAATACACCTCG
GACCAAATAActtttctatttgaaGGCTCAGCAAGAGAAATTATACCAAG
AATATTCAGCGAAGAAGACAAAAGAATCGAGTGACAAGTTAGAAGCTTAT
TATGAACAGCTCGTCAACAAATTACAGTCAGAAATGAAATCAATCAAAGT
TGACTTGGGTGccaaaacgcAAGATTTGGGCGAGACAAAGCAGCGTTTCA
ATGAACTGAAAGAACAACATCAAGAGAAATCCAGACAACATCAAAAACTT
CAGataatgTATGATACACTCAGAAGGCGATCAATCAATCCAGCTAGTTT
GAAAGAATTTCAAGAGAAAGGAGCACCACCTAACAATACAACCAACGAAA
AATTAGAACAACAACAAAATGCAAATtccaaattctttcaaatgagTATG
GGTACTAATTTCTTGGGATCGACGCGCAACATCCACGCATGCGTGCAAGA
AGCCCACCAATCACTATTCGCGACATTTCCATTTGCTGCTAAACATCCAA
ACGAAACTCGACCCAGTTCCCCTCCTACCACTGATActGGATTTGTGATG
AAGCCTTTCCCAACACCTCAAGCCCCTCAAGAGGGAACAGATTTCGGTCA
ACGCTTCACCCTACAGCTGAATACACCTCGGACCAAATAActtttctatt
tgaaGGCTCAGCAAGAGAAATTATACCAAGAATATTCAGCGAAGAAGACA
AAAGAATCGAGTGACAAGTTAGAAGCTTATTATGAACAGCTCGTCAACAA
ATTACAGTCAGAAATGAAATCAATCAAAGTTGACTTGGGTGccaaaacgc
AAGATTTGGGCGAGACAAAGCAGCGTTTCAATGAACTGAAAGAACAACAT
CAAGAGAAATCCAGACAACATCAAAAACTTCAGataatgTATGATACACT
CAGAAGGCGATCAATCAATCCAGCTAGTTTGAAAGAATTTCAAGAGAAAG
GAGCACCACCTAACAATACAACCAACGAAAAATTAGAACAACAACAAAAT
GCAAATtccaaattctttcaaatgagTATGGGTACTAATTTCTTGGGATC
GACGCGCAACATCCACGCATGCGTGCAAGAAGCCCACCAATCACTATTCG
CGACATTTCCATTTGCTGCTAAACATCCAAACGAAACTCGACCCAGTTCC
CCTCCTACCACTGATActGGATTTGTGATGAAGCCTTTCCCAACACCTCA
AGCCCCTCAAGAGGGAACAGATTTCGGTCAACGCTTCACCCTACAGCTGA
ATACACCTCGGACCAAATAActtttctatttgaaGGCTCAGCAAGAGAAA
TTATACCAAGAATATTCAGCGAAGAAGACAAAAGAATCGAGTGACAAGTT
AGAAGCTTATTATGAACAGCTCGTCAACAAATTACAGTCAGAAATGAAAT
CAATCAAAGTTGACTTGGGTGccaaaacgcAAGATTTGGGCGAGACAAAG
CAGCGTTTCAATGAACTGAAAGAACAACATCAAGAGAAATCCAGACAACA
TCAAAAACTTCAGataatgTATGATACACTCAGAAGGCGATCAATCAATC
CAGCTAGTTTGAAAGAATTTCAAGAGAAAGGAGCACCACCTAACAATACA
ACCAACGAAAAATTAGAACAACAACAAAATGCAAATtccaaattctttca
aatgagTATGGGTACTAATTTCTTGGGATCGACGCGCAACATCCACGCAT
GCGTGCAAGAAGCCCACCAATCACTATTCGCGACATTTCCATTTGCTGCT
AAACATCCAAACGAAACTCGACCCAGTTCCCCTCCTACCACTGATActGG
ATTTGTGATGAAGCCTTTCCCAACACCTCAAGCCCCTCAAGAGGGAACAG
ATTTCGGTCAACGCTTCACCCTACAGCTGAATACACCTCGGACCAAATAA
cttttctatttgaaGGCTCAGCAAGAGAAATTATACCAAGAATATTCAGC
GAAGAAGACAAAAGAATCGAGTGACAAGTTAGAAGCTTATTATGAACAGC
TCGTCAACAAATTACAGTCAGAAATGAAATCAATCAAAGTTGACTTGGGT
GccaaaacgcAAGATTTGGGCGAGACAAAGCAGCGTTTCAATGAACTGAA
AGAACAACATCAAGAGAAATCCAGACAACATCAAAAACTTCAGataatgT
ATGATACACTCAGAAGGCGATCAATCAATCCAGCTAGTTTGAAAGAATTT
CAAGAGAAAGGAGCACCACCTAACAATACAACCAACGAAAAATTAGAACA
ACAACAAAATGCAAATtccaaattctttcaaatgagTATGGGTACTAATT
TCTTGGGATCGACGCGCAACATCCACGCATGCGTGCAAGAAGCCCACCAA
TCACTATTCGCGACATTTCCATTTGCTGCTAAACATCCAAACGAAACTCG
ACCCAGTTCCCCTCCTACCACTGATActGGATTTGTGATGAAGCCTTTCC
CAACACCTCAAGCCCCTCAAGAGGGAACAGATTTCGGTCAACGCTTCACC
CTACAGCTGAATACACCTCGGACCAAATAActtttctatttgaaGGCTCA
GCAAGAGAAATTATACCAAGAATATTCAGCGAAGAAGACAAAAGAATCGA
GTGACAAGTTAGAAGCTTATTATGAACAGCTCGTCAACAAATTACAGTCA
GAAATGAAATCAATCAAAGTTGACTTGGGTGccaaaacgcAAGATTTGGG
CGAGACAAAGCAGCGTTTCAATGAACTGAAAGAACAACATCAAGAGAAAT
CCAGACAACATCAAAAACTTCAGataatgTATGATACACTCAGAAGGCGA
TCAATCAATCCAGCTAGTTTGAAAGAATTTCAAGAGAAAGGAGCACCACC
TAACAATACAACCAACGAAAAATTAGAACAACAACAAAATGCAAATtcca
aattctttcaaatgagTATGGGTACTAATTTCTTGGGATCGACGCGCAAC
ATCCACGCATGCGTGCAAGAAGCCCACCAATCACTATTCGCGACATTTCC
ATTTGCTGCTAAACATCCAAACGAAACTCGACCCAGTTCCCCTCCTACCA
CTGATActGGATTTGTGATGAAGCCTTTCCCAACACCTCAAGCCCCTCAA
GAGGGAACAGATTTCGGTCAACGCTTCACCCTACAGCTGAATACACCTCG
GACCAAATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_042720	XLOC_042720	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00068491-protein	TCONS_00068491-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_485	supercontig	scaffold_485:229236..232913 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.8239	8.80184	10.3763	10.3197	1.72305	1.88783	3.40043	2.39119	2.89753	3.1718	2.91711	3.17594	0.881485	0.736332	0.735362	0.930896	1.00571	1.70753	0.96094	0.895336	1.72259	1.43987	4.08832	2.93626	37.0858	23.9602	2.39161	2.86238	1.41774	0.993103

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00068491 vs. Swiss-Prot (Human)

BLAST of TCONS_00068491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00068491 (transcript) - C. hemisphaerica