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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068565 ID=TCONS_00068565|Name=TCONS_00068565|organism=Clytia hemisphaerica|type=transcript|length=1590bp
TCAAGGATCGTTTGTCCATAGTTTGAGGTAAGATAATAGAAAAGTGCGAA
TTAATTAAATTTCAGTATTTAAATTGGAGAATCAACTAAATAAAATGACA
TTAATTTACAACACATTTAAATAATGGTACATTGACAACAATAACATTCG
TTGTCCATAAACATCTCCTTTACATGGTGTCCTGTCAGAAGTTCCGATTT
AATGGAGTGTCTTTTACCTCGGTTATTCCGTACGTTCGGCGTTACCGGAC
CACCGTCTGTACTCGATAAATATTCTTTGGCGACCGTGGTCGTGGTGGAC
TCTAAGTCACTTTCTCGGCACTCCTGACCGGTTTCCAGTGAGGGTAAAGA
GATAGTGTATTCTGACCAACTCGAGTTCAAACTACAACATGATAAATCCG
AAACGGATTTCCTTTTGTTGGAAATGGAATGTGTATAAGAAGCCGATAAG
TGATCGGGATTCAATGAAATTTCGGGGTAGTCCGAATCTTCGTTTGAGGT
TATATCAGTGTCTCTTTGACGATGTATCGAGCGCACTTGTGAACGATTTT
CACTGTATAAAACCGTCGCATCGTCACTTTCTGTAGTTCCGTAACTTTTG
GTTTTCACCTTCAGGATGAGCGTTTGTTCTTCGCCTGTGTCTGCTCTCCT
TCGTTGTCTTATGTTGTCGTTCCTCTTGGATTTGAAGAAGGAAAAAGGGA
AAGTGCCGCCAGATGATTTGGTGCGATTTCGAGGATGGTCTTTTGTTGGT
GATTCGAAATAGGAGCTGTCAGAGTCAGTGTGTTCGTGAATGTGACGGAT
TGTGTGAACCGTGAGTGCTTTCCGAAGCTCCCCCGCAGGTGCTGAACGAG
ATAGCATGCTGCTTGAAGGGCGTGCGTTTTGATGACGCGCTTTCCTTCGA
CTTGGTAGGTCATCATCTTCGTCGTTCGTCTCACTTAGCCCTTCTAAAAT
AATCTGTCGAACTCGATCATCCAGTTGATAATGGTAGTTCAAAAGACCAG
AACTGTTTTCATCTGGTTGAATATCTTCCTCGTTGATTATAATTGGAATC
TGACTTATCGAGTCATTCAGTAGCCCTTCACTGGTATTTCGTCTCGATGA
GTGATAATGCTCACTACCGGTGACGTAATCATCTTCACTCGATAACCCAG
GTCTTTCTTCAACCGATCGCAATCTGGTTGTGAAGGGAGTTTCAACCAAG
GTCTCATTTCGTACATTAGACTCTTTTTGTTGTTCAGAGACCGCGGGTAA
CAGGCTAGTCTGTTCGTCTTTCGTAGAGTTCGTTTGTTTGCCATGGGAAC
CGTACCACCAGTCAGTAATGGTGGAAGTCAAAGGAGCATAATAATTGATC
GTTTTCAACATCTTGTCCATCTAAGTATCTTTATCATGTTATGCtaaatg
aaaaagtgaaaataagtATAAAAGTAAAGGGACACCCCTGTACCAGAGAC
CCCTTTCTCTCTGATACTCAACTAAagtgaaaaaccaaaaaatcacaCTG
GGTCATTACCCAAACAGGATTGTAATAAGGGATGTTACATCTTTTCATAC
ACTAtaataagaccatgttcagacgttacggtttcgtatt Run BLAST on NCBI protein sequence of TCONS_00068565-protein >TCONS_00068565-protein ID=TCONS_00068565-protein|Name=TCONS_00068565-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp
MDKMLKTINYYAPLTSTITDWWYGSHGKQTNSTKDEQTSLLPAVSEQQKE
SNVRNETLVETPFTTRLRSVEERPGLSSEDDYVTGSEHYHSSRRNTSEGL
LNDSISQIPIIINEEDIQPDENSSGLLNYHYQLDDRVRQIILEGLSETND
EDDDLPSRRKARHQNARPSSSMLSRSAPAGELRKALTVHTIRHIHEHTDS
DSSYFESPTKDHPRNRTKSSGGTFPFSFFKSKRNDNIRQRRRADTGEEQT
LILKVKTKSYGTTESDDATVLYSENRSQVRSIHRQRDTDITSNEDSDYPE
ISLNPDHLSASYTHSISNKRKSVSDLSCCSLNSSWSEYTISLPSLETGQE
CRESDLESTTTTVAKEYLSSTDGGPVTPNVRNNRGKRHSIKSELLTGHHV
KEMFMDNECYCCQCTII Run BLAST on NCBI transcript from alignment at scaffold_485:236350..237939 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068565 ID=TCONS_00068565|Name=TCONS_00068565|organism=Clytia hemisphaerica|type=transcript|length=1590bp|location=Sequence derived from alignment at scaffold_485:236350..237939 (Clytia hemisphaerica)
aatacgaaaccgtaacgtctgaacatggtcttattaTAGTGTATGAAAAG
ATGTAACATCCCTTATTACAATCCTGTTTGGGTAATGACCCAGtgtgatt
ttttggtttttcactTTAGTTGAGTATCAGAGAGAAAGGGGTCTCTGGTA
CAGGGGTGTCCCTTTACTTTTATacttattttcactttttcatttaGCAT
AACATGATAAAGATACTTAGATGGACAAGATGTTGAAAACGATCAATTAT
TATGCTCCTTTGACTTCCACCATTACTGACTGGTGGTACGGTTCCCATGG
CAAACAAACGAACTCTACGAAAGACGAACAGACTAGCCTGTTACCCGCGG
TCTCTGAACAACAAAAAGAGTCTAATGTACGAAATGAGACCTTGGTTGAA
ACTCCCTTCACAACCAGATTGCGATCGGTTGAAGAAAGACCTGGGTTATC
GAGTGAAGATGATTACGTCACCGGTAGTGAGCATTATCACTCATCGAGAC
GAAATACCAGTGAAGGGCTACTGAATGACTCGATAAGTCAGATTCCAATT
ATAATCAACGAGGAAGATATTCAACCAGATGAAAACAGTTCTGGTCTTTT
GAACTACCATTATCAACTGGATGATCGAGTTCGACAGATTATTTTAGAAG
GGCTAAGTGAGACGAACGACGAAGATGATGACCTACCAAGTCGAAGGAAA
GCGCGTCATCAAAACGCACGCCCTTCAAGCAGCATGCTATCTCGTTCAGC
ACCTGCGGGGGAGCTTCGGAAAGCACTCACGGTTCACACAATCCGTCACA
TTCACGAACACACTGACTCTGACAGCTCCTATTTCGAATCACCAACAAAA
GACCATCCTCGAAATCGCACCAAATCATCTGGCGGCACTTTCCCTTTTTC
CTTCTTCAAATCCAAGAGGAACGACAACATAAGACAACGAAGGAGAGCAG
ACACAGGCGAAGAACAAACGCTCATCCTGAAGGTGAAAACCAAAAGTTAC
GGAACTACAGAAAGTGACGATGCGACGGTTTTATACAGTGAAAATCGTTC
ACAAGTGCGCTCGATACATCGTCAAAGAGACACTGATATAACCTCAAACG
AAGATTCGGACTACCCCGAAATTTCATTGAATCCCGATCACTTATCGGCT
TCTTATACACATTCCATTTCCAACAAAAGGAAATCCGTTTCGGATTTATC
ATGTTGTAGTTTGAACTCGAGTTGGTCAGAATACACTATCTCTTTACCCT
CACTGGAAACCGGTCAGGAGTGCCGAGAAAGTGACTTAGAGTCCACCACG
ACCACGGTCGCCAAAGAATATTTATCGAGTACAGACGGTGGTCCGGTAAC
GCCGAACGTACGGAATAACCGAGGTAAAAGACACTCCATTAAATCGGAAC
TTCTGACAGGACACCATGTAAAGGAGATGTTTATGGACAACGAATGTTAT
TGTTGTCAATGTACCATTATTTAAATGTGTTGTAAATTAATGTCATTTTA
TTTAGTTGATTCTCCAATTTAAATACTGAAATTTAATTAATTCGCACTTT
TCTATTATCTTACCTCAAACTATGGACAAACGATCCTTGA Coding sequence (CDS) from alignment at scaffold_485:236350..237939 >TCONS_00068565 ID=TCONS_00068565|Name=TCONS_00068565|organism=Clytia hemisphaerica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_485:236350..237939 (Clytia hemisphaerica)
ATGGACAAGATGTTGAAAACGATCAATTATTATGCTCCTTTGACTTCCAC
CATTACTGACTGGTGGTACGGTTCCCATGGCAAACAAACGAACTCTACGA
AAGACGAACAGACTAGCCTGTTACCCGCGGTCTCTGAACAACAAAAAGAG
TCTAATGTACGAAATGAGACCTTGGTTGAAACTCCCTTCACAACCAGATT
GCGATCGGTTGAAGAAAGACCTGGGTTATCGAGTGAAGATGATTACGTCA
CCGGTAGTGAGCATTATCACTCATCGAGACGAAATACCAGTGAAGGGCTA
CTGAATGACTCGATAAGTCAGATTCCAATTATAATCAACGAGGAAGATAT
TCAACCAGATGAAAACAGTTCTGGTCTTTTGAACTACCATTATCAACTGG
ATGATCGAGTTCGACAGATTATTTTAGAAGGGCTAAGTGAGACGAACGAC
GAAGATGATGACCTACCAAGTCGAAGGAAAGCGCGTCATCAAAACGCACG
CCCTTCAAGCAGCATGCTATCTCGTTCAGCACCTGCGGGGGAGCTTCGGA
AAGCACTCACGGTTCACACAATCCGTCACATTCACGAACACACTGACTCT
GACAGCTCCTATTTCGAATCACCAACAAAAGACCATCCTCGAAATCGCAC
CAAATCATCTGGCGGCACTTTCCCTTTTTCCTTCTTCAAATCCAAGAGGA
ACGACAACATAAGACAACGAAGGAGAGCAGACACAGGCGAAGAACAAACG
CTCATCCTGAAGGTGAAAACCAAAAGTTACGGAACTACAGAAAGTGACGA
TGCGACGGTTTTATACAGTGAAAATCGTTCACAAGTGCGCTCGATACATC
GTCAAAGAGACACTGATATAACCTCAAACGAAGATTCGGACTACCCCGAA
ATTTCATTGAATCCCGATCACTTATCGGCTTCTTATACACATTCCATTTC
CAACAAAAGGAAATCCGTTTCGGATTTATCATGTTGTAGTTTGAACTCGA
GTTGGTCAGAATACACTATCTCTTTACCCTCACTGGAAACCGGTCAGGAG
TGCCGAGAAAGTGACTTAGAGTCCACCACGACCACGGTCGCCAAAGAATA
TTTATCGAGTACAGACGGTGGTCCGGTAACGCCGAACGTACGGAATAACC
GAGGTAAAAGACACTCCATTAAATCGGAACTTCTGACAGGACACCATGTA
AAGGAGATGTTTATGGACAACGAATGTTATTGTTGTCAATGTACCATTAT
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068565-exon-scaffold_485-1491911889:236350..237939 | TCONS_00068565-exon-scaffold_485-1491911889:236350..237939 | Clytia hemisphaerica | exon |
| TCONS_00068565-exon-scaffold_485-1510915933:236350..237939 | TCONS_00068565-exon-scaffold_485-1510915933:236350..237939 | Clytia hemisphaerica | exon |
| TCONS_00068565-exon-scaffold_485-1575043694:236350..237939 | TCONS_00068565-exon-scaffold_485-1575043694:236350..237939 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:236350..237939 . |
Blast
The following BLAST results are available for this feature:
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