TCONS_00068703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068703
Unique NameTCONS_00068703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068703 ID=TCONS_00068703|Name=TCONS_00068703|organism=Clytia hemisphaerica|type=transcript|length=351bp
CTAAATCTGCTGATACAGACTGGTGTTACTTGGTTGAAGACAAAGTTATT
TAATGTTGGTATATCCATACAGACATTACTTTTTTCATAGAGCCGGTCAT
AATTTCGTAGAAAGTGGACGGCCGGATTACGAATACGTAAGTTTTGTGTG
ACTTTTTGGATCACGGTCTCTCTGTTTTCGTATGATAATCTTTTATATAA
AGATGTGCTTAATTTGTTAACGACTAAGCCGAAACTGGTGATATCAGGAG
CTCCTTCTAGAACAGCTTCGATTGTTGATATATCTCCCGGTTTGACTCGA
CCTCCCTCCAAAGTGATGACAAAAGCAATGATAAAGTTGCCACTTTGTTT
T
Run BLAST on NCBI

protein sequence of TCONS_00068703-protein

>TCONS_00068703-protein ID=TCONS_00068703-protein|Name=TCONS_00068703-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
KQSGNFIIAFVITLEGGRVKPGDISTIEAVLEGAPDITSFGLVVNKLSTS
LYKRLSYENRETVIQKVTQNLRIRNPAVHFLRNYDRLYEKSNVCMDIPTL
NNFVFNQVTPVCISRF
Run BLAST on NCBI

transcript from alignment at scaffold_487:84122..84472

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068703 ID=TCONS_00068703|Name=TCONS_00068703|organism=Clytia hemisphaerica|type=transcript|length=351bp|location=Sequence derived from alignment at scaffold_487:84122..84472 (Clytia hemisphaerica)
AAAACAAAGTGGCAACTTTATCATTGCTTTTGTCATCACTTTGGAGGGAG
GTCGAGTCAAACCGGGAGATATATCAACAATCGAAGCTGTTCTAGAAGGA
GCTCCTGATATCACCAGTTTCGGCTTAGTCGTTAACAAATTAAGCACATC
TTTATATAAAAGATTATCATACGAAAACAGAGAGACCGTGATCCAAAAAG
TCACACAAAACTTACGTATTCGTAATCCGGCCGTCCACTTTCTACGAAAT
TATGACCGGCTCTATGAAAAAAGTAATGTCTGTATGGATATACCAACATT
AAATAACTTTGTCTTCAACCAAGTAACACCAGTCTGTATCAGCAGATTTA
G

Coding sequence (CDS) from alignment at scaffold_487:84122..84472

>TCONS_00068703 ID=TCONS_00068703|Name=TCONS_00068703|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_487:84122..84472 (Clytia hemisphaerica)
AAACAAAGTGGCAACTTTATCATTGCTTTTGTCATCACTTTGGAGGGAGG
TCGAGTCAAACCGGGAGATATATCAACAATCGAAGCTGTTCTAGAAGGAG
CTCCTGATATCACCAGTTTCGGCTTAGTCGTTAACAAATTAAGCACATCT
TTATATAAAAGATTATCATACGAAAACAGAGAGACCGTGATCCAAAAAGT
CACACAAAACTTACGTATTCGTAATCCGGCCGTCCACTTTCTACGAAATT
ATGACCGGCTCTATGAAAAAAGTAATGTCTGTATGGATATACCAACATTA
AATAACTTTGTCTTCAACCAAGTAACACCAGTCTGTATCAGCAGATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042860XLOC_042860Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068703-proteinTCONS_00068703-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068703-exon-scaffold_487-1491911889:84122..84472TCONS_00068703-exon-scaffold_487-1491911889:84122..84472Clytia hemisphaericaexon
TCONS_00068703-exon-scaffold_487-1510915933:84122..84472TCONS_00068703-exon-scaffold_487-1510915933:84122..84472Clytia hemisphaericaexon
TCONS_00068703-exon-scaffold_487-1575043694:84122..84472TCONS_00068703-exon-scaffold_487-1575043694:84122..84472Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_487supercontigscaffold_487:84122..84472 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.282885	0	0	0	0.321213	0	0	0	0	0	4.48639	1.38049	4.68168	5.7854	2.25067	2.69135	0.796766	1.94544	0.483125	0.353477	1.71879	1.30219	2.9507	2.39403	4.79618	5.11861	1.10922	0.565062
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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