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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068768 ID=TCONS_00068768|Name=TCONS_00068768|organism=Clytia hemisphaerica|type=transcript|length=1855bpRun BLAST on NCBI transcript from alignment at scaffold_49:226785..237868+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068768 ID=TCONS_00068768|Name=TCONS_00068768|organism=Clytia hemisphaerica|type=transcript|length=11084bp|location=Sequence derived from alignment at scaffold_49:226785..237868+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00068768 vs. Swiss-Prot (Human)
Match: ATM (Serine-protein kinase ATM OS=Homo sapiens GN=ATM PE=1 SV=4) HSP 1 Score: 461.455 bits (1186), Expect = 1.551e-142 Identity = 237/482 (49.17%), Postives = 332/482 (68.88%), Query Frame = 2
Query: 8 RNSRTKPPTLKPQDKTRLDAACSVVERLRKRHTKYIQDIEHLSQVYIEMAYWDIKHLKTETGPFDIPESRRLRQIHNLTSVMVPTVETKVDASLQYKNIIHIRKFDDKFTHCGGVNLPKVVTCVCSDGQRRRQLIKGKDDMRQDAVMQQVFSVANMLLQQDSESRKKNFHMRTYKVVPLSRKSGVMEWCEGTMPLGDYLIGGRSKKLGAHQRYYPSDWKPSECRQRLHKSSKK-----IKAFLEIEKNFHPVLRYFFLEKFKRAENWFHKRLNYTRSTAVASIVGYILGLGDRHCQNILIDYKTADIVHIDLGVAFEQGKLLPTPETIPFRLTRDLXXXXXXXXXXXXFRQACEKTMEVMRRSKESISTIVEVLLYDPLSAWTISSEKVNRLQNKANNTTANQSILDM-------TIADTEDIFEGEKNKMANRALLRLNQKLSGVEGGSFLSIQGQINYLILEAKDKNNLCKLYPGWQPWM 1417
R ++ P D+ R +AA ++ +R R + ++ +E L YI +A D KT+ +IP + + ++ NL V+VPT+E KVD + +Y N++ I+ F +F GGVNLPK++ CV SDG+ RRQL+KG+DD+RQDAVMQQVF + N LLQ+++E+RK+ + TYKVVPLS++SGV+EWC GT+P+G++L+ GAH+RY P+D+ +C++++ + KK + F+++ +NF PV RYF +EKF WF KRL YTRS A +SIVGYILGLGDRH QNILI+ ++A++VHIDLGVAFEQGK+LPTPET+PFRLTRD+VDGMG+ GVEGVFR+ CEKTMEVMR S+E++ TIVEVLLYDPL WT++ K LQ + + T L+ ++D + F NK+A R L+RL +KL GVE G+ LS+ GQ+N LI +A D NL +L+PGW+ W+
Sbjct: 2582 RITKNVPKQSSQLDEDRTEAANRIICTIRSRRPQMVRSVEALCDAYIILANLDATQWKTQRKGINIPADQPITKLKNLEDVVVPTMEIKVDHTGEYGNLVTIQSFKAEFRLAGGVNLPKIIDCVGSDGKERRQLVKGRDDLRQDAVMQQVFQMCNTLLQRNTETRKRKLTICTYKVVPLSQRSGVLEWCTGTVPIGEFLVNNED---GAHKRYRPNDFSAFQCQKKMMEVQKKSFEEKYEVFMDVCQNFQPVFRYFCMEKFLDPAIWFEKRLAYTRSVATSSIVGYILGLGDRHVQNILINEQSAELVHIDLGVAFEQGKILPTPETVPFRLTRDIVDGMGITGVEGVFRRCCEKTMEVMRNSQETLLTIVEVLLYDPLFDWTMNPLKALYLQQRPEDETELHPTLNADDQECKRNLSDIDQSF----NKVAERVLMRLQEKLKGVEEGTVLSVGGQVNLLIQQAIDPKNLSRLFPGWKAWV 3056 The following BLAST results are available for this feature:
BLAST of TCONS_00068768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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