TCONS_00068779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068779
Unique NameTCONS_00068779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length526

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068779 ID=TCONS_00068779|Name=TCONS_00068779|organism=Clytia hemisphaerica|type=transcript|length=526bp
AAACATTAGCAGTTAGTCTctgaagattgccatcctgGATGACATGAAAC
GTTTTCTTTACTCAGTGCTTtgttaaataaatataaagGTTTTCCAGTTA
CCGAAACATTAACAGTTAGCAAGAATTATAATTCTTACATTCATAAAACA
AGAGTTAGGTGTAGGTCTTGGTTTGTTTGTTGGTCGTCCACCCATACATT
CTTTAGCACACATTTTGGCTTCTTCTCCGCACATCGAAGCATCACGAGTT
GCGTTAAAACATTTCATGAACGACTTTCTGCACTAAAGTTGAAAAGAATA
TAGTttgataaataaatataaaggtTTCCAGTTACCCAAACATTAACAAT
TAACAGTTAGCAAGAAATGTAGTTCTTACATCCATAAAACACGAGTTAGG
TGTAGGTCTTGGTTTGTTTGTTGGTCGTCCACCCATACATTCTTTAGCAC
ACATTTTGACTTCTTCTCCGCACATCGAAGCATCACGAGTTGCATTAAAA
CATTTCATGAACGACTTTCTGCACTA
Run BLAST on NCBI

transcript from alignment at scaffold_49:363218..363978+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068779 ID=TCONS_00068779|Name=TCONS_00068779|organism=Clytia hemisphaerica|type=transcript|length=761bp|location=Sequence derived from alignment at scaffold_49:363218..363978+ (Clytia hemisphaerica)
AAACATTAGCAGTTAGTCTctgaagattgccatcctgGATGACATGAAAC
GTTTTCTTTACTCAGTGCTTtgttaaataaatataaagGTTTTCCAGTTA
CCGAAACATTAACAGTTAGCAAGAATTATAATTCTTACATTCATAAAACA
AGAGTTAGGTGTAGGTCTTGGTTTGTTTGTTGGTCGTCCACCCATACATT
CTTTAGCACACATTTTGGCTTCTTCTCCGCACATCGAAGCATCACGAGTT
GCGTTAAAACATTTCATGAACGACTTTCTGCACTAAAGTTGAAAAGAATA
TAGTttgataaataaatataaaggtTTCCAGTTACCCAAACATTAACAAT
TAACAGTTAGCAAGAAATGTAGTTCTTACATCCATAAAACACGAGTTAGG
TGTAGGTCTTGGTTTGTTTGTTGGTCGTCCACCCATACATTCTTTAGCAC
ACATTTTGACTTCTTCTCCGCACATCGAACCATCACGAGTTGCGTTAAAA
CATTCCATGAACGACTTTCTGCACTAAAGTTGAAAAGAATATAGTTtgtt
aaataaatataaagGTTTTCCAGTTACCTAAACATTAACAGTTAGCAAGA
AATATAGTTCTTACATCCATAAAACACGAGTTAGGTGTAGGTCTTGTTTT
GTTTGTTGGTCGTCCACCCATGCATTCTTTAGCACACATTTTGACTTCTT
CTCCGCACATCGAAGCATCACGAGTTGCATTAAAACATTTCATGAACGAC
TTTCTGCACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042889XLOC_042889Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068779-exon-scaffold_49-1491911889:363218..363669TCONS_00068779-exon-scaffold_49-1491911889:363218..363669Clytia hemisphaericaexon
TCONS_00068779-exon-scaffold_49-1510915933:363218..363669TCONS_00068779-exon-scaffold_49-1510915933:363218..363669Clytia hemisphaericaexon
TCONS_00068779-exon-scaffold_49-1575043694:363218..363669TCONS_00068779-exon-scaffold_49-1575043694:363218..363669Clytia hemisphaericaexon
TCONS_00068779-exon-scaffold_49-1491911889:363905..363978TCONS_00068779-exon-scaffold_49-1491911889:363905..363978Clytia hemisphaericaexon
TCONS_00068779-exon-scaffold_49-1510915933:363905..363978TCONS_00068779-exon-scaffold_49-1510915933:363905..363978Clytia hemisphaericaexon
TCONS_00068779-exon-scaffold_49-1575043694:363905..363978TCONS_00068779-exon-scaffold_49-1575043694:363905..363978Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:363218..363978 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.425137	0.203643	0.786358	1.46728	1.07211	0.355215	1.32952	1.56213	1.22268	0	0.481675	1.28087	26.9615	17.8097	0.362886	1.22023	8.03295	2.45954	30.9375	54.0315	5.9129	21.8644	9.44816	10.5673	1.62012	5.30695	0	0.165228	0.744171	0.405725
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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