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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068781 ID=TCONS_00068781|Name=TCONS_00068781|organism=Clytia hemisphaerica|type=transcript|length=2947bp
tttagcctgagacgtcctatctcatttacactgggtgacgaataccccat
gcaaatgctcaccccgttcatttgccaggatgtgcctgactgcctGATTG
GggcattccagaatttgtctacAACAGGTGGTGTCGGCCGACACAGGATT
TCaaagggcaaaagttttcaccaaaattcaaaatttccaaggcaagagaa
gaaaatgtatgaatttccacggcaattaaaataaaaaggcaaaaaaaaag
tggAATTTCCGACGCATTTTGCGAAggtacatggattttcatcggaattt
cAATCACGGCCAccactggagaaaaaaattatttcagaggctagaaaaaa
aataaaaaatgcacgtcgtctgACAGGGggtgacaaaaattttctggaat
ggcacATTGTGCAGAACTACTTGCCACTGAGATGTTCATTTtgcgtgaga
taaaaatttcaaagtgaaatCCGAAATCTTGGCccagttttccttttttc
caaaCATTGGGGAAatcagaaaattgaaaaaccaGGATATTGGGGaaact
accgtgagattgggtaacttgcatcagtggaagctaacatgcatagccct
caaatgaaagacttggctggtcattaaaatacaaagttaaatcaaaacaa
aaatggtagaatagAGCTGCGAGAggagctgcatagttgtattttaatga
ccagacaggtcattcatttgagggataTGCATGTGTTagcctctactgat
gcaagttacctgatctcacggtacTGTAGATTTGTCTAACCTCCACATGG
GTCTTCTTATCTTGACACCgaaaagtcaaaacaaacttttaatgaaattc
ttggtattaTTCTCATGGAAGAAGTTCATCTATCAAACAAGAGGTTCAGA
CAGTTAACATTACAAttctttcaaattaaaaaacaagCCGTGAACTGCAA
AATGAAattctgcaaaaatttctttccacAAAAAATTGGTCGTAATATTC
TCCAAAAACATACTTTAGctggattaatttttgcatgATTTGATTTCAGA
TTcacaattttttgcatttttttgcagaaataaAACTGGGTGTGGATTAG
TGTATTCATAAGAATATTCattatttaaactttttataacaaaatatttt
agtgaactgtataaacataaaaacaaaacaagatggttGCTTACTGGAGA
CAAGCTGGCTTGAACTACTTGCAATTTTCACGTCTGGCGTCACAAACATT
ACGAAAGTGCTTGAAACCTGAATTCCAAACTGAAGCTGTGATGCAAAAAC
AATCTGAATTGAAAATGATCAAATGGGAAGGTGGTAAACCAACTGGAGAG
ACCAAGTCAATTAAACTCTAAATTAAAAGACTAACTAAAATGGTTGAGTA
ggaatttttttattgtatacatcattttgaaaaagacatgactaaaaaaa
attgctgaaaatatattttagttttttttttgcattcctAAATATTCCCC
AGAAGAATCTGTTGTGCATTCATttacttaaaatttcaaaaagctcCTTG
TCAAAGTATATTTGAAGTATAGTATCTTTTAGAATTTGAACTAAGCTTTT
ATCAAACCTCCTAATATCCATTAATCTAAGGGTATCTAATGAAACTTCAG
TATAACACATTGTTTAGTATAGTCTAGTCTCTGATGAGCAaagtactttt
tttctttttttttggttttagaaAGTAAATGAAATAATTAACTTACTAGA
TTGGACCCATCCTTGAGTAGGCTGAAATATTAAAAGTCCACAATGGAAAA
CAATCTTGCTACTACAACTTTTGAGGAATGTTATTCAAGCTTTGAAGGCT
TACCCAGCAAACTCAACGAGGTTTACATCAGCAAAAGTGAACGCATCAAT
CAGTTGGTGATACTTTTCCCTGGTGATGTTCAGGAATGTTATAAAGAGAT
GATGTTAAGACGAGATACAAGATACAAAGAATTTTGTTACGAAAATTGTA
CTAAATGGTTACACCAAGTTTTTAATGATAGTTGTATTTTCGTTGTCAAA
CCATCAAGAATGCACCTTCACACGTTTGCTTGTTATGAACACTTCTTGGA
CACTAACGATGTGGGTATGCCAAACTATAAAACGGAAGATAAGCCAAAGG
CATGGTTACACTTGAGAGCGCTCCTTCAAAGTTGCACTTCGAAATATGAT
GCTGACAAAACGTGGAATGACAAACCAATATCACTTGTTTCTTTCAGTAA
AGGCTGTATTGTTTTGAATCAGTTGGTTTTAGAATTGCCATTATTAGTTG
AAACACAAAAACAGTCTCTCTTGACCAACATTCAAACGTTTTGTTGGTTG
GATGGTGGTGTACCAGGAAACAGTGGAGCGTATCCACGTAATGAAAAATG
TATtgaacttttatcaaaatatgttcCAAACATTGAGGTTCATACCACGC
CCTATCAGATGAAAGACCCTTTACGTGTTTGGAtttcaaaagagaaaaaa
cgTTTTGTACAGCTCTTGAAGAAATATAAAGCCGGATTGATAGACTGCTC
GTATTTTGAAAATGGCGTACCAGATTTAAATATGCATTTTAATTTAATAC
ATAGTTTTCGTAGATAGTATATTTTGTTATATTGGGGTGAGAATCAATAT
TTTAACTTGTAAATATAGTCCTTGAAAGTTAGAAACAATTTCTGGTCATC
TGTGAAACCTGATCAGACAATTAGAATATAGTTCCTGTGATcacatacct
taagggaagaaattttcgcggaaggaattttcgcggaatttaatttcgcg
aattggggcgtaattcgcgaaacacaccaaaattgttaaatcgcgaaatt
aaattccgcgaaattcgattttttttcttcttcttttattttgttgtttt
tgaccaggtgttACCAAAAAAGATGGACACAATTGATTTTTAAGCAT Run BLAST on NCBI protein sequence of TCONS_00068781-protein >TCONS_00068781-protein ID=TCONS_00068781-protein|Name=TCONS_00068781-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
MENNLATTTFEECYSSFEGLPSKLNEVYISKSERINQLVILFPGDVQECY
KEMMLRRDTRYKEFCYENCTKWLHQVFNDSCIFVVKPSRMHLHTFACYEH
FLDTNDVGMPNYKTEDKPKAWLHLRALLQSCTSKYDADKTWNDKPISLVS
FSKGCIVLNQLVLELPLLVETQKQSLLTNIQTFCWLDGGVPGNSGAYPRN
EKCIELLSKYVPNIEVHTTPYQMKDPLRVWISKEKKRFVQLLKKYKAGLI
DCSYFENGVPDLNMHFNLIHSFRR Run BLAST on NCBI transcript from alignment at scaffold_49:379212..382918+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068781 ID=TCONS_00068781|Name=TCONS_00068781|organism=Clytia hemisphaerica|type=transcript|length=3707bp|location=Sequence derived from alignment at scaffold_49:379212..382918+ (Clytia hemisphaerica)
tttagcctgagacgtcctatctcatttacactgggtgacgaataccccat
gcaaatgctcaccccgttcatttgccaggatgtgcctgactgcctGATTG
GggcattccagaatttgtctacAACAGGTGGTGTCGGCCGACACAGGATT
TCaaagggcaaaagttttcaccaaaattcaaaatttccaaggcaagagaa
gaaaatgtatgaatttccacggcaattaaaataaaaaggcaaaaaaaaag
tggAATTTCCGACGCATTTTGCGAAggtacatggattttcatcggaattt
cAATCACGGCCAccactggagaaaaaaattatttcagaggctagaaaaaa
aataaaaaatgcacgtcgtctgACAGGGggtgacaaaaattttctggaat
ggcacATTGTGCAGAACTACTTGCCACTGAGATGTTCATTTtgcgtgaga
taaaaatttcaaagtgaaatCCGAAATCTTGGCccagttttccttttttc
caaaCATTGGGGAAatcagaaaattgaaaaaccaGGATATTGGGGaaact
accgtgagattgggtaacttgcatcagtggaagctaacatgcatagccct
caaatgaaagacttggctggtcattaaaatacaaagttaaatcaaaacaa
aaatggtagaatagAGCTGCGAGAggagctgcatagttgtattttaatga
ccagacaggtcattcatttgagggataTGCATGTGTTagcctctactgat
gcaagttacctgatctcacggtacTGTAGATTTGTCTAACCTCCACATGG
GTCTTCTTATCTTGACACCgaaaagtcaaaacaaacttttaatgaaattc
ttggtattaTTCTCATGGAAGAAGTTCATCTATCAAACAAGAGGTTCAGA
CAGTTAACATTACAAttctttcaaattaaaaaacaagCCGTGAACTGCAA
AATGAAattctgcaaaaatttctttccacAAAAAATTGGTCGTAATATTC
TCCAAAAACATACTTTAGctggattaatttttgcatgATTTGATTTCAGA
TTcacaattttttgcatttttttgcagaaataaAACTGGGTGTGGATTAG
TGTATTCATAAGAATATTCattatttaaactttttataacaaaatatttt
agtgaactgtataaacataaaaacaaaacaagatggttGCTTACTGGAGA
CAAGCTGGCTTGAACTACTTGCAATTTTCACGTCTGGCGTCACAAACATT
ACGAAAGTGCTTGAAACCTGAATTCCAAACTGAAGCTGTGATGCAAAAAC
AATCTGAATTGAAAATGATCAAATGGGAAGGTGGTAAACCAACTGGAGAG
ACCAAGTCAATTAAACTCTAAATTAAAAGACTAACTAAAATGGTTGAGTA
ggaatttttttattgtatacatcattttgaaaaagacatgactaaaaaaa
attgctgaaaatatattttagttttttttttgcattcctAAATATTCCCC
AGAAGAATCTGTTGTGCATTCATttacttaaaatttcaaaaagctcCTTG
TCAAAGTATATTTGAAGTATAGTATCTTTTAGAATTTGAACTAAGCTTTT
ATCAAACCTCCTAATATCCATTAATCTAAGGGTATCTAATGAAACTTCAG
TATAACACATTGTTTAGTATAGTCTAGTCTCTGATGAGCAaagtactttt
tttctttttttttggttttagaaAGTAAATGAAATAATTAACTTACTAGA
TTGGACCCATCCTTGAGTAGGCTGAAATATTAAAAGTCCACAATGGAAAA
CAATCTTGCTACTACAACTTTTGAGGAATGTTATTCAAGCTTTGAAGGCT
TACCCAGCAAACTCAACGAGGTTTACATCAGCAAAAGTGAACGCATCAAT
CAGTTGGTGATACTTTTCCCTGGTGATGTTCAGGTAATTGATTCAAAGTT
ACCCTAAGGGGATTAATTATGGCAAAACCtatattgacctctatgaaaga
AACGGAAATTAAAACTGCCAAATTTGCTAGAATTACGAAATTAGTTCTCC
CCACCATTAAAATTGCCTTAATATGATAAATATTGCACTTTTCAATAATC
AGGAAAATGTTTCTAGCCCTACTTGTTATAAATTGTTTTCAGTTTTGAGG
AACTATAACCCATGATCACTACCACAAAGCAAATATTTAAATCcccaggt
tttttttaatcctTTTTCGCTTTCAAGGATCACTAAGTTTCTTTACTTTC
TCACTTTGTCACAGGAATGTTATAAAGAGATGATGTTAAGACGAGATACA
AGATACAAAGAATTTTGTTACGAAAATTGTACTAAATGGTTACACCAAGT
TTTTAATGATAGTTGTATTTTCGTTGTCAAACCATCAAGAATGCACCTTC
ACACGTTTGCTTGTTATGAACACTTCTTGGACACTAACGATGTGGGTATG
CCAAACTATAAAACGGAAGATAAGCCAAAGGCATGGTTACACTTGAGAGC
GCTCCTTCAAAGTTGCACTTCGAAATGTGAGTATAGTCTGGTATAATTca
tctttttattatttcagtAGGGCCTATATCAGCCtatataaataaaaatg
ttcatttaatttgcaaaagaaccttggaataggctcttccagaaatGTTC
ATACACCCCAGGTGGAGGATATCCTTGTctggggtagcgaaaaatcatca
aaatttgacttgtctggggggtaaatttgctctgtccggggggtcaactg
atgcttgtccggggagtaaaacccgttgtccgggggctaaaagtcacttt
gtccgggggtaaatcactgaaaattgttatatcctccaccccccccccat
ataGAAATAAGTTTCATCGAAGGAAAATTGGTCACTCTGTCTTATCCTAT
CATTCTGCTGTGTGGCTTTAATTTGACTGATTTCAAACTTTATCTTAAAT
CATAGATGATGCTGACAAAACGTGGAATGACAAACCAATATCACTTGTTT
CTTTCAGTAAAGGCTGTATTGTTTTGAATCAGTTGGTTTTAGAATTGCCA
TTATTAGTTGAAACACAAAAACAGTCTCTCTTGACCAACATTCAAACGTT
TTGTTGGTTGGATGGTGGTGTACCAGGAAACAGTGGAGCGTATCCACGTA
ATGAAAAATGTATtgaacttttatcaaaatatgttcCAAACATTGAGGTT
CATACCACGCCCTATCAGATGAAAGACCCTTTACGTGTTTGGAtttcaaa
agagaaaaaacgTTTTGTACAGCTCTTGAAGAAATATAAAGCCGGATTGA
TAGACTGCTCGTATTTTGAAAATGGCGTACCAGATTTAAATATGCATTTT
AATTTAATACATAGTTTTCGTAGATAGTATATTTTGTTATATTGGGGTGA
GAATCAATATTTTAACTTGTAAATATAGTCCTTGAAAGTTAGAAACAATT
TCTGGTCATCTGTGAAACCTGATCAGACAATTAGAATATAGTTCCTGTGA
Tcacataccttaagggaagaaattttcgcggaaggaattttcgcggaatt
taatttcgcgaattggggcgtaattcgcgaaacacaccaaaattgttaaa
tcgcgaaattaaattccgcgaaattcgattttttttcttcttcttttatt
ttgttgtttttgaccaggtgttACCAAAAAAGATGGACACAATTGATTTT
TAAGCAT Coding sequence (CDS) from alignment at scaffold_49:379212..382918+ >TCONS_00068781 ID=TCONS_00068781|Name=TCONS_00068781|organism=Clytia hemisphaerica|type=CDS|length=2475bp|location=Sequence derived from alignment at scaffold_49:379212..382918+ (Clytia hemisphaerica)
ATGGAAAACAATCTTGCTACTACAACTTTTGAGGAATGTTATTCAAGCTT
TGAAGGCTTACCCAGCAAACTCAACGAGGTTTACATCAGCAAAAGTGAAC
GCATCAATCAGTTGGTGATACTTTTCCCTGGTGATGTTCAGGAATGTTAT
AAAGAGATGATGTTAAGACGAGATACAAGATACAAAGAATTTTGTTACGA
AAATTGTACTAAATGGTTACACCAAGTTTTTAATGATAGTTGTATTTTCG
TTGTCAAACCATCAAGAATGCACCTTCACACGTTTGCTTGTTATGAACAC
TTCTTGGACACTAACGATGTGGGTATGCCAAACTATAAAACGGAAGATAA
GCCAAAGGCATGGTTACACTTGAGAGCGCTCCTTCAAAGTTGCACTTCGA
AATATGATGCTGACAAAACGTGGAATGACAAACCAATATCACTTGTTTCT
TTCAGTAAAGGCTGTATTGTTTTGAATCAGTTGGTTTTAGAATTGCCATT
ATTAGTTGAAACACAAAAACAGTCTCTCTTGACCAACATTCAAACGTTTT
GTTGGTTGGATGGTGGTGTACCAGGAAACAGTGGAGCGTATCCACGTAAT
GAAAAATGTATtgaacttttatcaaaatatgttcCAAACATTGAGGTTCA
TACCACGCCCTATCAGATGAAAGACCCTTTACGTGTTTGGAtttcaaaag
agaaaaaacgTTTTGTACAGCTCTTGAAGAAATATAAAGCCGGATTGATA
GACTGCTCGTATTTTGAAAATGGCGTACCAGATTTAAATATGCATTTTAA
TTTAATACATAGTTTTCGTAGATAGATGGAAAACAATCTTGCTACTACAA
CTTTTGAGGAATGTTATTCAAGCTTTGAAGGCTTACCCAGCAAACTCAAC
GAGGTTTACATCAGCAAAAGTGAACGCATCAATCAGTTGGTGATACTTTT
CCCTGGTGATGTTCAGGAATGTTATAAAGAGATGATGTTAAGACGAGATA
CAAGATACAAAGAATTTTGTTACGAAAATTGTACTAAATGGTTACACCAA
GTTTTTAATGATAGTTGTATTTTCGTTGTCAAACCATCAAGAATGCACCT
TCACACGTTTGCTTGTTATGAACACTTCTTGGACACTAACGATGTGGGTA
TGCCAAACTATAAAACGGAAGATAAGCCAAAGGCATGGTTACACTTGAGA
GCGCTCCTTCAAAGTTGCACTTCGAAATATGATGCTGACAAAACGTGGAA
TGACAAACCAATATCACTTGTTTCTTTCAGTAAAGGCTGTATTGTTTTGA
ATCAGTTGGTTTTAGAATTGCCATTATTAGTTGAAACACAAAAACAGTCT
CTCTTGACCAACATTCAAACGTTTTGTTGGTTGGATGGTGGTGTACCAGG
AAACAGTGGAGCGTATCCACGTAATGAAAAATGTATtgaacttttatcaa
aatatgttcCAAACATTGAGGTTCATACCACGCCCTATCAGATGAAAGAC
CCTTTACGTGTTTGGAtttcaaaagagaaaaaacgTTTTGTACAGCTCTT
GAAGAAATATAAAGCCGGATTGATAGACTGCTCGTATTTTGAAAATGGCG
TACCAGATTTAAATATGCATTTTAATTTAATACATAGTTTTCGTAGATAG
ATGGAAAACAATCTTGCTACTACAACTTTTGAGGAATGTTATTCAAGCTT
TGAAGGCTTACCCAGCAAACTCAACGAGGTTTACATCAGCAAAAGTGAAC
GCATCAATCAGTTGGTGATACTTTTCCCTGGTGATGTTCAGGAATGTTAT
AAAGAGATGATGTTAAGACGAGATACAAGATACAAAGAATTTTGTTACGA
AAATTGTACTAAATGGTTACACCAAGTTTTTAATGATAGTTGTATTTTCG
TTGTCAAACCATCAAGAATGCACCTTCACACGTTTGCTTGTTATGAACAC
TTCTTGGACACTAACGATGTGGGTATGCCAAACTATAAAACGGAAGATAA
GCCAAAGGCATGGTTACACTTGAGAGCGCTCCTTCAAAGTTGCACTTCGA
AATATGATGCTGACAAAACGTGGAATGACAAACCAATATCACTTGTTTCT
TTCAGTAAAGGCTGTATTGTTTTGAATCAGTTGGTTTTAGAATTGCCATT
ATTAGTTGAAACACAAAAACAGTCTCTCTTGACCAACATTCAAACGTTTT
GTTGGTTGGATGGTGGTGTACCAGGAAACAGTGGAGCGTATCCACGTAAT
GAAAAATGTATtgaacttttatcaaaatatgttcCAAACATTGAGGTTCA
TACCACGCCCTATCAGATGAAAGACCCTTTACGTGTTTGGAtttcaaaag
agaaaaaacgTTTTGTACAGCTCTTGAAGAAATATAAAGCCGGATTGATA
GACTGCTCGTATTTTGAAAATGGCGTACCAGATTTAAATATGCATTTTAA
TTTAATACATAGTTTTCGTAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068781-exon-scaffold_49-1491911889:379212..381144 | TCONS_00068781-exon-scaffold_49-1491911889:379212..381144 | Clytia hemisphaerica | exon |
| TCONS_00068781-exon-scaffold_49-1510915933:379212..381144 | TCONS_00068781-exon-scaffold_49-1510915933:379212..381144 | Clytia hemisphaerica | exon |
| TCONS_00068781-exon-scaffold_49-1575043694:379212..381144 | TCONS_00068781-exon-scaffold_49-1575043694:379212..381144 | Clytia hemisphaerica | exon |
| TCONS_00068781-exon-scaffold_49-1491911889:381476..381737 | TCONS_00068781-exon-scaffold_49-1491911889:381476..381737 | Clytia hemisphaerica | exon |
| TCONS_00068781-exon-scaffold_49-1510915933:381476..381737 | TCONS_00068781-exon-scaffold_49-1510915933:381476..381737 | Clytia hemisphaerica | exon |
| TCONS_00068781-exon-scaffold_49-1575043694:381476..381737 | TCONS_00068781-exon-scaffold_49-1575043694:381476..381737 | Clytia hemisphaerica | exon |
| TCONS_00068781-exon-scaffold_49-1491911889:382167..382918 | TCONS_00068781-exon-scaffold_49-1491911889:382167..382918 | Clytia hemisphaerica | exon |
| TCONS_00068781-exon-scaffold_49-1510915933:382167..382918 | TCONS_00068781-exon-scaffold_49-1510915933:382167..382918 | Clytia hemisphaerica | exon |
| TCONS_00068781-exon-scaffold_49-1575043694:382167..382918 | TCONS_00068781-exon-scaffold_49-1575043694:382167..382918 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:379212..382918 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR018881 | UPF0565 |
Blast
The following BLAST results are available for this feature:
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