TCONS_00068805 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068805
Unique NameTCONS_00068805
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1029

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068805 ID=TCONS_00068805|Name=TCONS_00068805|organism=Clytia hemisphaerica|type=transcript|length=1029bp
CTATCAAGAGGTTGTGAAACCCAATAACTAAATCTGGTCGGAGGTGGGGT
GTGAACATAAGAGTAATCAAATTGGTTCGTATTTTTCGtaataaaatttc
cataattctcaaataataacaataataataacaataatacaaAATATCAC
TGTGATAAAGTCATAAGTACTCGtatgttttcaaaaaacatcttccaaaa
tttaagaattatTTGTCCTTAGCGGCCACAACATGAAGGAGCACATGATG
GCATACAAGCTGGCATAGGTGCTGCCATTTGTACTGGAGGTCGACAACAT
CCTGTTTGTTGGCAAGCTTGTGGACAAGATGCAGTTGGTTGTTGGGAGAT
GATAGCCATCCAATGTAAGCAAATTGGAGCACATGGTCGAGCTGGGGCAC
CTGGAGCTCCAGCTGGTCCCTGAGGTCCGCATGGTCCCATAGGTCCTTGT
GGTCCACCCATTCCCATTGGTCCCGCTGGACCCATTGGTCCTGGAACTCC
TACTGCTCCAGTAGCTCCTTGTGCTCCGCATGGTCCCATTGCTCCACATG
GAGCAGCTCCACCACAAGGGGCAGCCATCATCATAGGTGCTGCACAGGGT
GGAGCAGCGCAAGGGGCAGCCATTGGAGCGGCGCAGGGCGGGGCTGCACA
AGGGGCTGGACAAGGTGGAGCAGCGCAAGGGGCAGGCATCGGTGCGGCGC
AGGGTGGAGCAGCGCAAGGGGCGGGCATTGGAGCGGCACATGGTGGAGCA
GCGCAAGGGGCGGGCATTGGAGCGGCACAGGGTGGGGCAGCACATGGCAT
AGCTACAGGCATGGGTGGTGGAGCAGCACAACATTGAGCACTGCAAGCTG
GTGCACAATTTGGAGAGCACATGCCAGCACACATTTGACGCTTGGAAGCA
GGTTTGGACTTTGAATCTTTGGTTTCTGTTGATGCTGGTTTTTCAACTGA
AAGAAGATTTGTCgattaatttcaaaaagattattcaaattaatttttca
tgagTTTTAATAATGTCTCATAATAATTT
Run BLAST on NCBI

transcript from alignment at scaffold_49:602251..603357+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068805 ID=TCONS_00068805|Name=TCONS_00068805|organism=Clytia hemisphaerica|type=transcript|length=1107bp|location=Sequence derived from alignment at scaffold_49:602251..603357+ (Clytia hemisphaerica)
CTATCAAGAGGTTGTGAAACCCAATAACTAAATCTGGTCGGAGGTGGGGT
GTGAACATAAGAGTAATCAAATTGGTTCGTATTTTTCGtaataaaatttc
cataattctcaaataataacaataataataacaataatacaaAATATCAC
TGTGATAAAGTCATAAGTACTCGtatgttttcaaaaaacatcttccaaaa
tttaagaattatTTGTCCTTAGCGGCCACAACATGAAGGAGCACATGATG
GCATACAAGCTGGCATAGGTGCTGCCATTTGTACTGGAGGTCGACAACAT
CCTGTTTGTTGGCAAGCTTGTGGACAAGATGCAGTTGGTTGTTGGGAGAT
GATAGCCATCCAATGTAAGCAAATTGGAGCACATGGTCGAGCTGGGGCAC
CTGGAGCTCCAGCTGGTCCCTGAGGTCCGCATGGTCCCATAGGTCCTTGT
GGTCCACCCATTCCCATTGGTCCCGCTGGACCCATTGGTCCTGGAACTCC
TACTGCTCCAGTAGCTCCTTGTGCTCCGCATGGTCCCATTGCTCCACATG
GAGCAGCTCCACCACAAGGGGCAGCCATCATCATAGGTGCTGCACAGGGT
GGAGCAGCGCAAGGGGCAGCCATTGGAGCGGCGCAGGGCGGGGCTGCACA
AGGGGCTGGACAAGGTGGAGCAGCGCAAGGGGCAGGCATCGGTGGTGCGC
AAGGTGGGGCAGCACAAGGAGCATACATAGCGGCCGCGCATGGTGGGGCA
GCGCAAGGGGCGGGCATTGGAGCGGCGCAGGGTGGAGCAGCGCAAGGGGC
GGGCATTGGAGCGGCACATGGTGGAGCAGCGCAAGGGGCGGGCATTGGAG
CGGCACAGGGTGGGGCAGCACATGGCATAGCTACAGGCATGGGTGGTGGA
GCAGCACAACATTGAGCACTGCAAGCTGGTGCACAATTTGGAGAGCACAT
GCCAGCACACATTTGACGCTTGGAAGCAGGTTTGGACTTTGAATCTTTGG
TTTCTGTTGATGCTGGTTTTTCAACTGAAAGAAGATTTGTCgattaattt
caaaaagattattcaaattaatttttcatgagTTTTAATAATGTCTCATA
ATAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042902XLOC_042902Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068805-exon-scaffold_49-1491911889:602251..602944TCONS_00068805-exon-scaffold_49-1491911889:602251..602944Clytia hemisphaericaexon
TCONS_00068805-exon-scaffold_49-1510915933:602251..602944TCONS_00068805-exon-scaffold_49-1510915933:602251..602944Clytia hemisphaericaexon
TCONS_00068805-exon-scaffold_49-1575043694:602251..602944TCONS_00068805-exon-scaffold_49-1575043694:602251..602944Clytia hemisphaericaexon
TCONS_00068805-exon-scaffold_49-1491911889:603023..603357TCONS_00068805-exon-scaffold_49-1491911889:603023..603357Clytia hemisphaericaexon
TCONS_00068805-exon-scaffold_49-1510915933:603023..603357TCONS_00068805-exon-scaffold_49-1510915933:603023..603357Clytia hemisphaericaexon
TCONS_00068805-exon-scaffold_49-1575043694:603023..603357TCONS_00068805-exon-scaffold_49-1575043694:603023..603357Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:602251..603357 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	2.56323	8.43246	13.657	21.8565	2.91006	0.0499309	0	0.349353	0	48.7092	50.024	0	0	21.9514	25.6233	27.3889	13.7663	1.84322	0	0	0.231708	0	0.0522182
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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