TCONS_00068830 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068830
Unique NameTCONS_00068830
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068830 ID=TCONS_00068830|Name=TCONS_00068830|organism=Clytia hemisphaerica|type=transcript|length=817bp
GTTACCTTGAATTATCCTTTCATTTCTTTACTTCTATTTTCAAGGAGCGA
ATTCTGAGAAATTACAGAACAGAGAGAAGTACTTCAAAAAGAATGATGGA
AAAAACTGCATCTTTCGATGCTTCCCAAGAAACAGGTTACGATGTTGTGG
TGGTGGTACCTTCAACTGTCGTCTCAAACacGTGTCAAGAATGTATCATC
TTATTCAATGCTCCACTTCCCAGAAACATCGACTTCTTCATCAAGTTTGC
TTCACCTCACAAAACAAGCTTCGTCAAAGCTGACCGGCTTAACGATACTG
CCATGAAATTTCAAGCACCTTATAATTTTCCAACGGGCGCATGTAAAATA
TCAATAcacaacaaatcaaacaaaaacttgcTTTGTCGTTATAAAGAAGA
CTTTCTATTCGAATCAAACTTGGAAGCAGTGCATAGTATATTACAAACAG
TGTCCGATCCTATCTCATTCATGGCTGACGCTCTGGACGTCGAAAATGAT
GACGGAATTGCCATCGATTTCACGCtggaaaaaatcttcaaagcTAACCG
TCCACCGAATTTCCACCTTTTAAAAGATAAAGAAACCGACTTGAACATTT
ATACTTCCGAACTTCATCATTCACGCAACCCAACCCTTCTTCACTTCGCC
GCCCGTTACAATTTGGTTCGATTATGTTTGGCCTTATCAGATTCGCCAGG
TGGCAAAGAAGCCTTGAACCTTCAAAACTTAGATGGACTTTACCCTCACA
ATTTAGCTGAACAATGCAAAAACGATTCCCTAGCACGACTACTGGTCGAA
GCTAAGGACAATGACAC
Run BLAST on NCBI

transcript from alignment at scaffold_49:94027..97718-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068830 ID=TCONS_00068830|Name=TCONS_00068830|organism=Clytia hemisphaerica|type=transcript|length=3692bp|location=Sequence derived from alignment at scaffold_49:94027..97718- (Clytia hemisphaerica)
GTTACCTTGAATTATCCTTTCATTTCTTTACTTCTATTTTCAAGGAGCGA
ATTCTGAGAAATTACAGAACAGAGAGAAGTACTTCAAAAAGAATGATGGA
AAAAACTGCATCTTTCGATGCTTCCCAAGAAACAGGTACAAACATTTATA
AGAAATTCTCAGATCCCGTTTCTTTCATTATTCCTGCGAAATAATTTCTA
TGATATTAATAACCCAAGGCTACTACTTCGAGTGAAGACTGCGATTGTAT
AATTGAATACACACCCTTCTCACAGACCCAGTAGGAATCTTTAAGCCAGT
GAGGATAAAACGGACCAAAACTCGATGAGGATTTGATATTCCCATGTTTT
TTTTATGGCTGGGGATTTGAATTCTATTGTTTTTGAGCCAGAAAATTCAG
TGGGGATGGAAAAATAGCACAATATTTTACAGTGAGGATTTGCTTATCTG
ATTATTTTCAGCAGGGACAAAAATGACAGTATTATTTTCCAATGGGGACG
ATATTCTGGTTGATTTTTCCAGTGGGTCTGTGAGAAGGGGGTGATTGAAT
GCTTTTGATTTTCATTACAGGTTACGATGTTGTGGTGGTGGTACCTTCAA
CTGTCGTCTCAAACGTTTGTTTCTTTCATTCGCATGATTCCTTTTCTTAT
GTTTCCGTCCTAATTTGCAAGGAGATTTCTTGATTGAAAGATATACGTTT
TTATTAGAAAAAAATTTATTTCTATAAGAACACAAGGCTTCGATGGCCCA
AATTTAAAGAAAGTTAAGTTGAGAACAATTCATGGCTTTATGTTCTCTAA
AACACCCGATTTCTTAGGAAAATGTATAAAAATACTCACAAAATGGTAAA
AATAAGAACATTTAAGAACATTTTTAGACTTAAAACTAAAAAATTTAAGA
ACATCCAAAGGCTTCGAAAGGCTTATATAAAAGATGTGTAACAATGCCTC
ATTTTTCATTTCCATCGGAGGGTTTTTTTCTCACTTTACACCCCTTTGTC
ACAGACCCGGTGGGAAATTTTCAGCCAGTGGGTGTCAAAATAACTGACTG
AAACTCGATGGGGATTGTTTTTCCCGTATTTCTTATGGCCGGGGATTTAA
ATTCGTTTGTTTTCAGGTCAGAAAATTCAGTGGGGATGGGAAAATAGCCA
TGATATTTTGCATTGAGGATTGGTTTATTTGATTATTTTCAGTGGGCACA
AAAAGTAATTTTCCACTGGGGATGATATTTTGGCTAATTTTTCCAGTGGG
GCTGTGAGAAGGGGTGTCATTTTCGTTGTAGATGAATCTGGATGAATGTG
TTTTTCATTTATTTAGACGTGTCAAGAATGTATCATCTTATTCAATGCTC
CACTTCCCAGAAACATCGACTTCTTCATCAAGTTTGCTTCACCTCACAAA
ACAAGCTTCGTCAAAGCTGACCGGCTTAACGATACTGCCATGAAATTTCA
AGCACCTTGTAAGTACCTATCCATTCTCTCTAGTCGTGGAAATTTTTAAC
ACCCACCAGACCCCCAGCTTCGTCAATGTACAGCTTTTTTCTGAGTAAAT
TTTACTTTTAGGCATAAAATTTGAAACTCAATCTAAGTTTACTAAAATAG
CCCAGCTCAAAGTGCTTAGAAAAATCCCTGCTCTTAGTTAAATTCAAATC
TAAAGTTTCTTTTTCTCTAGTACACTACCCATATAATAGTGATTTTATCT
TTATTTTTGGCAGATAATTTTCCAACGGGCGCATGTAAAATATCAATACA
CAACAAATCAAACAAAAACTTGCTTTGTCGTTATAAAGAAGACTTTCTAT
TCGAATCAAACTTGGAAGCAGTGCATAGTATATTACAAACAGTGTCCGAT
CCTATCTCATTCATGGCTGACGCTCTGGACGTCGAAAATGATGACGGAAT
TGCCATCGATTTCACGCTGGAAAAAATCTTCAAAGCTAACCGTCCACCGA
ATTTCCACCTTTTAAAAGATAAAGAAACCGACTTGAACATTTATACTTCC
GGTAAAAGAAATTATTTACTCAACTTGAAGGAAACACAGATAGATTGATT
GCTTGCTTCGATTTCACAATCTTTGTTGTGATTTTCGATTTCTTGTTTCC
GCGTGGGTTCCTTTTGCAACAAGAAACATAATTGTTTCACACATCGTTCA
GACAGCCATTTCCTAAGTACTTACACTCTCAAAGTGTGAAATTGTTTTCA
TTCTCAGGAAAATTTACTATTTAATAGCATTAGCGGTTGGTGTCAGTTTC
AACCTTCGTTCTTCGTGGAAACTTACACTTACGTCTTACACTGACCCAAT
ACAGCTGATTGGTTGAAAGTGACGTATTGACAGATTTTAGGTCACTTACA
ACCAATCAGCTATCGGGTCTGTGATGTAATGTCCGAAGACATTGCAATGG
TGCACATCATATATTTATTCATCTTTCTCAGAACTTCATCATTCACGCAA
CCCAACCCTTCTTCACTTCGCCGCCCGTTACAATTTGGTTCGATTATGTT
TGGCCTTATCAGATTCGCCAGGTGGCAAAGAAGCCTTGAACCTTCAAAAC
TTAGATGGACTTTACCCTCACAATTTAGCTGAACAATGCAAAAACGATTC
CCTAGCACGACTACTGGTAACAAACACATCTTTTACGTCATTTAGAAGCC
ACTTTACGATGCTGTTTGATTACAATTTTCCTTTTACTTTTTGAGGGAAA
TTAGTTTTTCTTTAAAACCAGCTTTGGGTTTTCTTTTAGATTTTGTCCTG
CTGTAAAATCTTTGCCTTAAGTGACATTGTGCTCAATATATGCGCGAAAA
TTGCTCAAAGATATGGGTGAAAGATCTTGTATACGAGTGACATTGTTTCA
AAACATTTCGAATCTTTGATACAGAAATAGGGTATTTCCATGATCTGTGT
TGATCGGTGATTATCTCACCTAAACAGTTTGTGATGAAAGATTTTACAAA
CAAGAAGACGGCGAAGAAAAAAGTTGTGTCTCGGAGCCATATGAAGTGTT
TGATGTCATTTCATTTACATTGATGTTATTGACAAAGTGTTGTTTATTTT
TGTTCATGCTCATCTGGTATTCGCCCTTACGAAAAAGATTTGTTCTTATA
ATATTCAAAGCTCAAGTTACAAAGTGACAAAACTTCTTGCTTGTTTCTGT
AGAATCTGAATTGATGAATTATTGCTTGAAAGCAAGCAGATCTCGAAAAT
TCACTCCTGGAAATTATTTCCGACTGATTTTTCTTATGAATAATAAACTG
ATTTACATGGAACGACCTTTGTCAAAAATATTGTCATACACGCGCTTTAT
TGTTTATTTTACAAGACATGTCAGAACGTGAAAATGATGTGTTGTTGTAA
TACGAATTACGTCACTCATGTTCCTTGTTGAAGCCAAATGTTTTTCCGTG
ATATCATTGCTTTTCACTGAACGCGTTTATAATTCATAGAGACCGCGTCA
AAGTAAACTTTGGAATGATCAAGTAGATTCTTGGACCAGGCTTTATATTC
CTAATATCCCATTCCAATTCAAACAGTGTCAACGTAATTAGTACGTGAAT
GTTCTACGTAACTTCGGCGTGATTCATTTTTCTTTTCCTTTTAAACACCC
TTTGTTTCCATGAATATCTTTTGATCGTCCATAATTTCTAAACCATTTTC
CTCTTCTATTCCACCTTAGGTCGAAGCTAAGGACAATGACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042911XLOC_042911Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068830-exon-scaffold_49-1575043694:97584..97718TCONS_00068830-exon-scaffold_49-1575043694:97584..97718Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1575043694:97105..97148TCONS_00068830-exon-scaffold_49-1575043694:97105..97148Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1575043694:96261..96402TCONS_00068830-exon-scaffold_49-1575043694:96261..96402Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1575043694:95718..96005TCONS_00068830-exon-scaffold_49-1575043694:95718..96005Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1575043694:95103..95287TCONS_00068830-exon-scaffold_49-1575043694:95103..95287Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1575043694:94027..94049TCONS_00068830-exon-scaffold_49-1575043694:94027..94049Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1510915933:97584..97718TCONS_00068830-exon-scaffold_49-1510915933:97584..97718Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1510915933:97105..97148TCONS_00068830-exon-scaffold_49-1510915933:97105..97148Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1510915933:96261..96402TCONS_00068830-exon-scaffold_49-1510915933:96261..96402Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1510915933:95718..96005TCONS_00068830-exon-scaffold_49-1510915933:95718..96005Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1510915933:95103..95287TCONS_00068830-exon-scaffold_49-1510915933:95103..95287Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1510915933:94027..94049TCONS_00068830-exon-scaffold_49-1510915933:94027..94049Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1491911889:97584..97718TCONS_00068830-exon-scaffold_49-1491911889:97584..97718Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1491911889:97105..97148TCONS_00068830-exon-scaffold_49-1491911889:97105..97148Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1491911889:96261..96402TCONS_00068830-exon-scaffold_49-1491911889:96261..96402Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1491911889:95718..96005TCONS_00068830-exon-scaffold_49-1491911889:95718..96005Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1491911889:95103..95287TCONS_00068830-exon-scaffold_49-1491911889:95103..95287Clytia hemisphaericaexon
TCONS_00068830-exon-scaffold_49-1491911889:94027..94049TCONS_00068830-exon-scaffold_49-1491911889:94027..94049Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:94027..97718 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0767182	0	0	0	0	0	0	0	0	0.0140749	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068830 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top