TCONS_00068859 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068859
Unique NameTCONS_00068859
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068859 ID=TCONS_00068859|Name=TCONS_00068859|organism=Clytia hemisphaerica|type=transcript|length=3619bp
CATTTTCATCGTCATCATTGTCCTCATCATTGTCTCCACCACCAAGCATT
GCCAAGTCATTCTGATCTCTCTTCTCTTCCATCTGTTTCTTCATCACACG
ATCAGCCATTGCACCattataaccatcattcttacACCCAAACACTGCAT
AtatctttttaccattttcccaACCAACTGGTTTGACAGCTAACCGACCT
GTTGAAATTCTATAAGTGATATCTTCACaagtcatttttaattttcgttt
ctttctttttctagtACAAGCTCTAACATTGTATTTGATTTTATCATCGA
TCTTATCAGGTCCTTCCACAATCTGTACCAACGTTCCTGCACTAAACGCC
TTGATTTGGACACATGTTTTCAGTTTGTAAGTTTTAActtctgtttttgt
tttctttttcttcttcgtcgGAATAACTTTCCTCTTTTTAGCAGTTTTAT
CaattttcgatttctcaaaAGCAACAAATTCACTCATTAGATCTGGAGTA
GGACTTGGTTGTGCTGCTTGTATCTTTTGCTGCTCGCTTAACATCAGAGA
CATGAGGTTCTTGCCAGCATCATCTGGTTTCTGAACACCTATCTTCTGTT
GCTGTTTTAAAGTAGCTGCTACATCATCTTTAGTATCAGCTGCTTCAGAC
TTCTTACCATCCTTCTTTTTATCCTTAACAGAATCTTTAGTATCTCCAAC
ATCGTCGTCAACTGCAGCTTCATCATGGTGTAGAATATTAATCATTTTTT
CCACATCCTCCAAATCTTTCGTCCCTGATGACatctttgaaaactttttt
cgaaTATCTTTCAAATCGTCAGTTAGAgatgatttcaattttgaaacagT
CAATCTAAGGTCATCGTCAGATTCATCCGATTCTTTGTGATCCATAGGTT
CTAAATGTCGATGATGTGGTCTGTCATTGTCACCAATACCATCATCATAA
AGTCCATCATCTTTGGCAGCATGTTTTTTCATATCTTTATCAAAAGGCAT
AATTTCATCATCGTCCATCTCTTTAAAATCATTTCCACGTGTATGTCTTG
TTGGGAATAATTTCTCATGTCGATGACTTAGTCGATgatgtttttcactt
ttttcttcctCTTCTGGTTCACTTTCATCTTCATTGCCGTCATCACTGCT
ATCGTCCATTTGTCTTTCTTTACCGATAACAGCATCTGATTTAACGGTTC
GATCCATATTCTCAAGAGGATCGTGAGACAGAATACTTGGTGACATATAT
TGCTCAACATTCTCTGCTATGACTAAAGGTGTTCTTTGTTGTGGCTCTGG
CTGAGGTGGATTTTCTGGAGGTGGTGGAATGGTTGTTTGTGGTGGAGGTG
GAGGTggcggtggtggtggtggtggtggcgTTGTGGGTTGAAGTGTcgtg
gttgttgtagttgttgtggTGGTGGTCGTTTTCAAGTCTTGATCGTTTTC
ATTTTCTCCATGTGAACTTCTTCTCAATCCATCGCCAGGATCCTCCACAT
CTTGATCTCGATCTTTGAACGGATCAAAACTCCTCAAATCAGGGTCATCC
TCTTTTCGTTGTCCTTCATAATTGGATGCATCTCCGTGAGAAAGAGGAGC
TTGTTGCTGGTATCGTCCATAAGGATCTGCCGAATCTCCAAACGATCTAC
CATAAGGTGGTTCGAATCTATTTTGATCATAGTAAGGTTGTTGATAGTTA
TTCTCATATCCCCATTGATTTGTTGGTACTGGTGATTCTGGTTGTCGATT
ATCCATAAACATATTCTGATCATCAAAACCCCCATTTGGTTGGTCACCAT
ATCTAGGATTCTGTTTTTCAAATCCTTGTGTGGGACCCATTGATGGTTGT
TGCTCGACTCCGGCAGCTTGTGGTGAATTCTTGATGTCAGTACTATCACC
GAGGTCAATGCTACCAGCGTTAAAATTAGATTTAGATTGAGGTGAAAGAT
TCCCAATATTCAATGACGATAAAACACTTTTTGCAGCTTCTAAAAAGGGG
TTGATTTTTGTTGTAGTTGATGTTGGTAATTGAGCTATTGCTGGCTTTTG
AGTTGTTCCTGGTGTCAACAGCTCTGGTGTAGGTTGTATCTTCTTGATTG
TGATTGTAGTAGCTATTTGTGGAGTTGGTGAAGCAGGAGTTGGTGGAATC
AAGACGCGGATCTGTGGTATCCCAGGGATTTTTTGTCTCTTATCATTTTC
AGATGTCTTTATTGTATTTGCATTCTGTTCCTCAATGTTAAGATTACTGT
TCAAATTGTTGTTATTGATAAGTTGGGaatgatgtttttgttgttctaaa
gtcttttgttcttctttttgttcttgTGTATCTTTTGTTTTCTGTAAAGT
CGCGTTTGATATTTgtatgaaaaaatctttcagtCTGTCACTAAAGTTTT
GATATTCAGAACTAGAGTTTGTTAGATTATCTGTCAAAGTCAATGTCTTG
TTATAGTTTGTGATATTAGATCTTTTAGAATCATGCAAATGTTTGTCGTG
GTTGTAGATACTTGGGTGGTGATGCTTTTTATGTAATTCAAATGTTTCGA
AAGTGAAAAATGCTGAAACACCAACCAAAACGATTATTAAAACGTAAAAC
ACAATTGAAAACAATGTTTGACAACATAGAACGTTGCGAATAAGATTCTT
TCCTTTTCTTTGTGCTTCTTCTTCGAATGTTTCATCCTTCCTTTTCGATT
TGTTTAAGTTTTCATCCAAATTCGTATCAATATCAATCGATTGGAATTTA
TTGAAAATCGGTTTTATGGATCCTTCTGCTTTGGGGCTTTCTCCAGTAGG
GCTGCTAGCATCAGCTAACTGTTTGTTCCCAGATTTTAATTTTCCTTGAT
CAATTTCTGCAttataaatattgaaattgatcgttgtttttgtttcattc
ggTTTAATATTAGTCCTTTCAAAATTCTGGTCTGCACTTTTATGGTGTTC
TTCTTTTGGACTTGGAAGATTTTTGACATGTTNtgtttttgtttcattcg
gTTTAATATTAGTCCTTTCAAAATTCTGGTCTGCACTTTTATGGTGTTCT
TCTTTTGGACTTGGAAGATTTTTCGCATGTTCTTCTTTTGGACTGTGAAT
TGGTCCCGAACTAAACGTTGGAGATTTTTCTTTTGGAGGTGATTGTAGTC
TGCCATTAtgttcaagatttttaaaatccccatttttcgaattcttatca
attttgtcaatatttggatCAACTGGTGAAATAATTTTCGGTTCCAGTTT
TACTGTATCattgtctttgtttttattcttaTTCGCCAGTAATGTTTTAT
TCAAAAGTTCCTGTTTCTTTTTAAGCACAACTCGCTTACGTTCCAAGAAT
CCTAAATCAACTTCTTTAATATGAAAGGTGGATCGGTCTTCAAAAGTCTG
CAAGAACCGCTCACGTTCGTTTTTCCCGACTTTCTTTTTCCGACGAATGT
TTGGGTATATTTTTGTCGGAATGAGCGACGGTCGTTTTCGTGGAGAACTT
CCATTGTCGGTGCTTTGACTCAGGTTAGGTTTATTGATAGGCAGGTGACT
ATCAGTGGTGGTATTGATGGATGATGAGTGATTGGACATGAACGAACCAT
TACATCAAACATAAACTAC
Run BLAST on NCBI

transcript from alignment at scaffold_49:420824..424504-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068859 ID=TCONS_00068859|Name=TCONS_00068859|organism=Clytia hemisphaerica|type=transcript|length=3681bp|location=Sequence derived from alignment at scaffold_49:420824..424504- (Clytia hemisphaerica)
CATTTTCATCGTCATCATTGTCCTCATCATTGTCTCCACCACCAAGCATT
GCCAAGTCATTCTGATCTCTCTTCTCTTCCATCTGTTTCTTCATCACACG
ATCAGCCATTGCACCATTATAACCATCATTCTTACACCCAAACACTGCAT
ATATCTTTTTACCATTTTCCCAACCAACTGGTTTGACAGCTAACCGACCT
GTTGAAATTCTATAAGTGATATCTTCACAAGTCATTTTTAATTTTCGTTT
CTTTCTTTTTCTAGTACAAGCTCTAACATTGTATTTGATTTTATCATCGA
TCTTATCAGGTCCTTCCACAATCTGTACCAACGTTCCTGCACTAAACGCC
TTGATTTGGACACATGTTTTCAGTTTGTAAGTTTTAACTTCTGTTTTTGT
TTTCTTTTTCTTCTTCGTCGGAATAACTTTCCTCTTTTTAGCAGTTTTAT
CAATTTTCGATTTCTCAAAAGCAACAAATTCACTCATTAGATCTGGAGTA
GGACTTGGTTGTGCTGCTTGTATCTTTTGCTGCTCGCTTAACATCAGAGA
CATGAGGTTCTTGCCAGCATCATCTGGTTTCTGAACACCTATCTTCTGTT
GCTGTTTTAAAGTAGCTGCTACATCATCTTTAGTATCAGCTGCTTCAGAC
TTCTTACCATCCTTCTTTTTATCCTTAACAGAATCTTTAGTATCTCCAAC
ATCGTCGTCAACTGCAGCTTCATCATGGTGTAGAATATTAATCATTTTTT
CCACATCCTCCAAATCTTTCGTCCCTGATGACATCTTTGAAAACTTTTTT
CGAATATCTTTCAAATCGTCAGTTAGAGATGATTTCAATTTTGAAACAGT
CAATCTAAGGTCATCGTCAGATTCATCCGATTCTTTGTGATCCATAGGTT
CTAAATGTCGATGATGTGGTCTGTCATTGTCACCAATACCATCATCATAA
AGTCCATCATCTTTGGCAGCATGTTTTTTCATATCTTTATCAAAAGGCAT
AATTTCATCATCGTCCATCTCTTTAAAATCATTTCCACGTGTATGTCTTG
TTGGGAATAATTTCTCATGTCGATGACTTAGTCGATGATGTTTTTCACTT
TTTTCTTCCTCTTCTGGTTCACTTTCATCTTCATTGCCGTCATCACTGCT
ATCGTCCATTTGTCTTTCTTTACCGATAACAGCATCTGATTTAACGGTTC
GATCCATATTCTCAAGAGGATCGTGAGACAGAATACTTGGTGACATATAT
TGCTCAACATTCTCTGCTATGACTAAAGGTGTTCTTTGTTGTGGCTCTGG
CTGAGGTGGATTTTCTGGAGGTGGTGGAATGGTTGTTTGTGGTGGAGGTG
GAGGTGGCGGTGGTGGTGGTGGTGGTGGCGTTGTGGGTTGAAGTGTCGTG
GTTGTTGTAGTTGTTGTGGTGGTGGTCGTTTTCAAGTCTTGATCGTTTTC
ATTTTCTCCATGTGAACTTCTTCTCAATCCATCGCCAGGATCCTCCACAT
CTTGATCTCGATCTTTGAACGGATCAAAACTCCTCAAATCAGGGTCATCC
TCTTTTCGTTGTCCTTCATAATTGGATGCATCTCCGTGAGAAAGAGGAGC
TTGTTGCTGGTATCGTCCATAAGGATCTGCCGAATCTCCAAACGATCTAC
CATAAGGTGGTTCGAATCTATTTTGATCATAGTAAGGTTGTTGATAGTTA
TTCTCATATCCCCATTGATTTGTTGGTACTGGTGATTCTGGTTGTCGATT
ATCCATAAACATATTCTGATCATCAAAACCTCCATTTGGTTGGTCACCAT
ACCTAGGATTCTGTTTNTAAACATATTCTGATCATCAAAACCCCCATTTG
GTTGGTCACCATATCTAGGATTCTGTTTTTCAAATCCTTGTGTGGGACCC
ATTGATGGTTGTTGCTCGACTCCGGCAGCTTGTGGTGAATTCTTGATGTC
AGTACTATCACCGAGGTCAATGCTACCAGCGTTAAAATTAGATTTAGATT
GAGGTGAAAGATTCCCAATATTCAATGACGATAAAACACTTTTTGCAGCT
TCTAAAAAGGGGTTGATTTTTGTTGTAGTTGATGTTGGTAATTGAGCTAT
TGCTGGCTTTTGAGTTGTTCCTGGTGTCAACAGCTCTGGTGTAGGTTGTA
TCTTCTTGATTGTGATTGTAGTAGCTATTTGTGGAGTTGGTGAAGCAGGA
GTTGGTGGAATCAAGACGCGGATCTGTGGTATCCCAGGGATTTTTTGTCT
CTTATCATTTTCAGATGTCTTTATTGTATTTGCATTCTGTTCCTCAATGT
TAAGATTACTGTTCAAATTGTTGTTATTGATAAGTTGGGAATGATGTTTT
TGTTGTTCTAAAGTCTTTTGTTCTTCTTTTTGTTCTTGTGTATCTTTTGT
TTTCTGTAAAGTCGCGTTTGATATTTGTATGAAAAAATCTTTCAGTCTGT
CACTAAAGTTTTGATATTCAGAACTAGAGTTTGTTAGATTATCTGTCAAA
GTCAATGTCTTGTTATAGTTTGTGATATTAGATCTTTTAGAATCATGCAA
ATGTTTGTCGTGGTTGTAGATACTTGGGTGGTGATGCTTTTTATGTAATT
CAAATGTTTCGAAAGTGAAAAATGCTGAAACACCAACCAAAACGATTATT
AAAACGTAAAACACAATTGAAAACAATGTTTGACAACATAGAACGTTGCG
AATAAGATTCTTTCCTTTTCTTTGTGCTTCTTCTTCGAATGTTTCATCCT
TCCTTTTCGATTTGTTTAAGTTTTCATCCAAATTCGTATCAATATCAATC
GATTGGAATTTATTGAAAATCGGTTTTATGGATCCTTCTGCTTTGGGGCT
TTCTCCAGTAGGGCTGCTAGCATCAGCTAACTGTTTGTTCCCAGATTTTA
ATTTTCCTTGATCAATTTCTGCATTATAAATATTGAAATTGATCGTTGTT
TTTGTTTCATTCGGTTTAATATTAGTCCTTTCAAAATTCTGGTCTGCACT
TTTATGGTGTTCTTCTTTTGGACTTGGAAGATTTTTGACATGTTNTGTTT
TTGTTTCATTCGGTTTAATATTAGTCCTTTCAAAATTCTGGTCTGCACTT
TTATGGTGTTCTTCTTTTGGACTTGGAAGATTTTTCGCATGTTCTTCTTT
TGGACTGTGAATTGGTCCCGAACTAAACGTTGGAGATTTTTCTTTTGGAG
GTGATTGTAGTCTGCCATTATGTTCAAGATTTTTAAAATCCCCATTTTTC
GAATTCTTATCAATTTTGTCAATATTTGGATCAACTGGTGAAATAATTTT
CGGTTCCAGTTTTACTGTATCATTGTCTTTGTTTTTATTCTTATTCGCCA
GTAATGTTTTATTCAAAAGTTCCTGTTTCTTTTTAAGCACAACTCGCTTA
CGTTCCAAGAATCCTAAATCAACTTCTTTAATATGAAAGGTGGATCGGTC
TTCAAAAGTCTGCAAGAACCGCTCACGTTCGTTTTTCCCGACTTTCTTTT
TCCGACGAATGTTTGGGTATATTTTTGTCGGAATGAGCGACGGTCGTTTT
CGTGGAGAACTTCCATTGTCGGTGCTTTGACTCAGGTTAGGTTTATTGAT
AGGCAGGTGACTATCAGTGGTGGTATTGATGGATGATGAGTGATTGGACA
TGAACGAACCATTACATCAAACATAAACTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042920XLOC_042920Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068859-exon-scaffold_49-1575043694:422745..424504TCONS_00068859-exon-scaffold_49-1575043694:422745..424504Clytia hemisphaericaexon
TCONS_00068859-exon-scaffold_49-1575043694:420824..422682TCONS_00068859-exon-scaffold_49-1575043694:420824..422682Clytia hemisphaericaexon
TCONS_00068859-exon-scaffold_49-1510915933:422745..424504TCONS_00068859-exon-scaffold_49-1510915933:422745..424504Clytia hemisphaericaexon
TCONS_00068859-exon-scaffold_49-1510915933:420824..422682TCONS_00068859-exon-scaffold_49-1510915933:420824..422682Clytia hemisphaericaexon
TCONS_00068859-exon-scaffold_49-1491911889:422745..424504TCONS_00068859-exon-scaffold_49-1491911889:422745..424504Clytia hemisphaericaexon
TCONS_00068859-exon-scaffold_49-1491911889:420824..422682TCONS_00068859-exon-scaffold_49-1491911889:420824..422682Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:420824..424504 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.010404	0.0101456	0	0	0	0	0.0606547	0.088169	0	0.084771	0	0	0.304151	0.151353	0	0	0	0	0	0	0	0	0	0	0.080687	0.282691	0	9.36183e-06	0	0.0117652
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068859 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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