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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068960 ID=TCONS_00068960|Name=TCONS_00068960|organism=Clytia hemisphaerica|type=transcript|length=4748bpRun BLAST on NCBI transcript from alignment at scaffold_491:8725..23513+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00068960 ID=TCONS_00068960|Name=TCONS_00068960|organism=Clytia hemisphaerica|type=transcript|length=14789bp|location=Sequence derived from alignment at scaffold_491:8725..23513+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00068960 vs. Swiss-Prot (Human)
Match: ROBO1 (Roundabout homolog 1 OS=Homo sapiens GN=ROBO1 PE=1 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 8.928e-43 Identity = 175/710 (24.65%), Postives = 294/710 (41.41%), Query Frame = 3
Query: 471 GKYTCHASNSEGTKKSEPAYLTVKVIKPDLYSHWTTVEAYVGKTLQLQCFNKFKPEPDRTWMKREGDMPESSRIGYQY-DKSVMIINGAKISDSGEYVCTGENEAGKQSIIVKVIVYEKPTFLIQPTDMTIGRGQTATFQCQVKGGKSPTIEWFYNTK-----AYSQKFQSGNVIVTKDNDLVISNVDTFGQQSVVCTYRDSISRNQDKKFSPKVFLKVTSSV-NPPPSVQVLTEVKKTEKSDLTLPCVVRTSAGEQASIKW-----LTASDNREVDTGANTVWITAGINSANLTIQGLLTSDSGGYRCVAETPSGTISNITMLQVNAL-LSEKPPKITNLNSVGT----------SATSITLSWDRPKTAILLPITSYFLKVKNTGTLETVERFAAGSATK-YVVQGLEPDSTYLITINAINKVGNGVAANFPFTDTLDA-NVTPDPSGAEDKLEDVNLGISL------GTVTTSTIEVRWN-KVSANRITGYIVMHREV----SKSAFIESEEITPTKTSLVLYGLKANTEYAIKVKAVSSKHQ-KESSLKTGKTLNR---LPPVAKKVYIEKYSASDMIVFWKISSEDLDLVDTVEITIQQSDTSSSGNKVPFAKVTLPKTSKKKLFENIDNTKIYYVVVLLKTVDGKTGKSTEIPAPWARLAVGEKTPDF-------DAVIPGGEKEEENSLGDIVKEPWFIATIG 2459
GKY C +N G ++SE A LTV + +P + + V + + +C + P P W K +G++P+S Y+ D + I D G Y C EN GK + V E P F+++P D + G+T TFQC+ G P I W +Y S V++ DL I+NV +C + N K +L+VT + + PP V V +T D T + +I W L ++ + + N V L I+ D+G Y C+A TPSG + ++V + +PP+ T+ N + + S ++TLSW + P TSY ++ + + + + A T+ ++GL+P++ YL + A N G++ +D + +V P G + K LG ++ +++S+IEV W + I GY +++R +S ++ E TP K S+V+ L+ Y IK + ++ Q +S +K KTL PP V + + ++V W+ E DT +Q+ GN+ ++ + + +D + V+ L V G S E+ A + + P F + V P + + D+VK+P FIA IG
Sbjct: 236 GKYVCVGTNMVGERESEVAELTV-LERPSFVKRPSNLAVTVDDSAEFKCEARGDPVPTVRWRKDDGELPKSR---YEIRDDHTLKIRKVTAGDMGSYTCVAENMVGKAEASATLTVQEPPHFVVKPRDQVVALGRTVTFQCEATGNPQPAIFWRREGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQ-----TLNVAGSIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV----------LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPSAPSKPEVTDVSRNTVTLSWQPNLNSGATP-TSYIIEAFSHASGSSWQTVAENVKTETSAIKGLKPNAIYLFLVRAANAY--GISDPSQISDPVKTQDVLPTSQGVDHKQVQRELGNAVLHLHNPTVLSSSSIEVHWTVDQQSQYIQGYKILYRPSGANHGESDWLVFEVRTPAKNSVVIPDLRKGVNYEIKARPFFNEFQGADSEIKFAKTLEEAPSAPPQGVTVSKNDGNGTAILVSWQPPPE-----DTQNGMVQEYKVWCLGNE-----------TRYHINKTVDGSTFSVVIPFL--VPG-IRYSVEVAASTGAGSGVKSEPQFIQLDAHGNPVSPEDQVSLAQQISDVVKQPAFIAGIG 904 HSP 2 Score: 35.8094 bits (81), Expect = 8.928e-43 Identity = 17/61 (27.87%), Postives = 30/61 (49.18%), Query Frame = 1
Query: 196 ISNRFRYSPQNATVEMHKIHTMKCRPPNSYPNATIEWYHNDVLVQPKQYQIDIFDLNGXMM 378
+ + FR +P + V + + M+C+PP +P TI W + + K +I I G +M
Sbjct: 168 LRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI--RGGKLM 226 HSP 3 Score: 95.9005 bits (237), Expect = 1.489e-19 Identity = 131/555 (23.60%), Postives = 227/555 (40.90%), Query Frame = 3
Query: 438 IQFGRITWEERGKYTCHASNSEGTKKSEPAYLTVKVIKPDLYSHWTTVEAYVGKTLQLQCFN-KFKPEPDRTWMKREGDMPE-SSRIGYQYDKSVMIINGAKISDSGEYVCTGENEAG-KQSIIVKVIVYEKPTFLIQPTDMTIGRGQTATFQCQVKGGKSPTIEWFYNTKAYSQKFQSGNVIVTKDNDLVISNVDTFGQQSVVCTYRDSISRNQDKKFSPKVFLKVTSSVNPPPS--VQVLTEVKKTEKSDLTLPCVVRTSAGEQASIKWLTASDNREVDTGANTVWIT----------AGINSANLTIQGLLTSDSGGYRCVAETPSGTISNITMLQVNALLSEKPPKITN---------------LNSVGTSATSITLSWDRPKTAILLPITSYFLKVKNTGTLETVERFAA-GSATKYVVQGLEP--DSTYLITINAINKVGNGVAANFPFTDTLDANVTPD-PSGAEDKLEDVNLGISLGTVTTSTIEVRW--NKVSANRITGYIV-MHREVSKSAFIESEEITPTKTSLVLYGLKANTEYAIKVKAVSS 1991
I GR + + G Y C A N G S A L V +++ D + + V VG+ ++C + PEP +W K + + RI + K ++I + SD+G+YVC G N G ++S + ++ V E+P+F+ +P+++ + +A F+C+ +G PT+ W + + + D+ L I V S C + + K T +V PP V+ +V ++ +T C + Q +I W RE G+ + + + + +LTI + SD G Y C +G+I L+V +++++PP + L+ V T + T+ W K +L+ +K G L+ R+A G +Y P ++T+ I + + G V P D N+ P PS E + V+ +T+ + W N S T YI+ S S++ E T+TS + GLK N Y V+A ++
Sbjct: 132 IVHGRKSRPDEGVYVCVARNYLGEAVSHNASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK--LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKRPSNLAVTVDDSAEFKCEARGDPVPTVRW----RKDDGELPKSRYEIRDDHTLKIRKVTAGDMGSYTCVAENMVG---------KAEASATLTVQEPPHFVVKPRDQVVALGRT-VTFQC--EATGNPQPAIFW-----RRE---GSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSIITKAYLEVTDVIADRPPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWR--KDGVLVSTQDSRIKQLENGVLQI--RYAKLGDTGRYTCIASTPSGEATWSAYIE-VQEFGVPVQPPRP----TDPNLIPSAPSKPE-----------VTDVSRNTVTLSWQPNLNSGATPTSYIIEAFSHASGSSWQTVAENVKTETS-AIKGLKPNAIYLFLVRAANA 639 The following BLAST results are available for this feature:
BLAST of TCONS_00068960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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