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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068963 ID=TCONS_00068963|Name=TCONS_00068963|organism=Clytia hemisphaerica|type=transcript|length=1775bp
TCAGAgtgaagaaaaacatttaattttggtgttttttctcttgtgtaaaa
atattttcgatattGTGCTGCTCACAATAGTTTCAAAGGAATAGAATAGA
AATTTCTAGCTGTGCGCTTATTGGATGGCGCTCCAATAAAACAATCTGGT
GGAATGCGGCCTTCAAACGTTCATTCTCGATTATTAATGCGCTTGCGGGG
CATTCtcagcgacagctacttgctagtttaaGAACACTATCTAATTTCAC
ACTTTTATCTGCAGATAGTCAGTTTTAGGGTATATGAGCTTCTCAAAGGA
CTCAGCCAAAAACTCTAGGCATGACCTTGAACCCCCCTGCACCTAGTATG
TTACTatgttttttcatattttaaaatCAATAGAGTCAATAAAATAAACG
AGAATGGCTGTTCAATACGCACCACAAAAATTGACAGTACCCGATGGTTT
CAATAATCTTCTTGAAGGTTTGGCACGAGAAGTTCTAAGAGAACAACCAG
AAAACATCATCAAATTTGCAGCTGATTATTTCAAACAACAGGTTGCTACT
AGAGTcgCTAACGGTGGTGAACCACTTCCACCACGACCACAAGTAAAATC
TCAACCTATGAGCGATCAAAAGGAAGAGGCAGCGCCATCTCCACCGCCCT
CAGCTAAAGAACCCACCCCACCACCGCCACAAGATATCGCCACAGAAGAA
GTTCAATCAACGGATGTTGACGAGGACAAAGAACAAGACTCTCCTAGGTT
GACTGAAGAACAAGCGGCAACAAAAATCCAAGCTATGGTTCGTGGAAAGA
AAGCACGTGGTGACGTTGAAGctttaaaagcatcaaaatcaCAGACCGAC
GAGGAAACACCACAAGCTTCAGCtaccgaaaacgaaagtgaaaaagaaCG
AAGTAATACCGATACCGAGGCGGAGGACCAAGTACAGAGCGACGCGACAG
CGCCAGAAAGTGAACCTGCTGCAAATGAATCACAAACAGAAGAATCAGAA
GTAAAAGACGGCGCTGAAGTCGAAGAAGCTACGGAAGAGGAATTAACAGG
AGCCGCTCTAAAGATTCAAGCTACGTTCCGTGGTTCTAAAGCGAGGAAAG
CAGTTGCTGCTCAGAAGGAATCTTTGAACAATGTGAAAACAACTGAAGAA
GGCgatgaagataaaaatgaagagGTTGTTAATGAGGATAAAAAAGAAGA
GGTGGTTGATGAGGAAGCAAAACCAGCCCCTCCTGAAGAAGAGGGTGGTA
ATTAACGACCAACTTAACTTCTTCATGAACCTGAACTCGTGTAATACATT
CATAGTCTCAGTTGAATTCAAAGTACCTGGCACTCTTGGTAATCAAACAA
TTTCATGTTTTCAAACTTATGATTAATTTATTGTCTTATACAATATTTCT
CTCTCGCTTTGGTTCTTTAAAGATTGTTTTTTGCTTTActaaaaatctaa
cttttatcTCTTGAAATTAATGTCATTATTTGCAATATCTTTTTTGCGGG
TTTGATATTTTATGGATTTAAATCCAAATGCAAACTCCGGCTGAGCCTTT
TCACCTTGGAGAGAGGAacattaaaactttttgtttttattttgtaaata
tgtgatttttgaaaaatatataacgGTATAAATGAGTGTTTCTTGCGCTC
GGCAATCTCTCAAGTCATATTGTCTGTTGAAATTTGTTGTATGCTATTTG
TATTCTGTTCCTAcaaatgtaaattttgacaaataaaaGTTTTTACCAAA
TACAAGTTGTCTGTCTACAAAAGGA Run BLAST on NCBI protein sequence of TCONS_00068963-protein >TCONS_00068963-protein ID=TCONS_00068963-protein|Name=TCONS_00068963-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MAVQYAPQKLTVPDGFNNLLEGLAREVLREQPENIIKFAADYFKQQVATR
VANGGEPLPPRPQVKSQPMSDQKEEAAPSPPPSAKEPTPPPPQDIATEEV
QSTDVDEDKEQDSPRLTEEQAATKIQAMVRGKKARGDVEALKASKSQTDE
ETPQASATENESEKERSNTDTEAEDQVQSDATAPESEPAANESQTEESEV
KDGAEVEEATEEELTGAALKIQATFRGSKARKAVAAQKESLNNVKTTEEG
DEDKNEEVVNEDKKEEVVDEEAKPAPPEEEGGN Run BLAST on NCBI transcript from alignment at scaffold_491:40908..44145+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068963 ID=TCONS_00068963|Name=TCONS_00068963|organism=Clytia hemisphaerica|type=transcript|length=3238bp|location=Sequence derived from alignment at scaffold_491:40908..44145+ (Clytia hemisphaerica)
TCAGAgtgaagaaaaacatttaattttggtgttttttctcttgtgtaaaa
atattttcgatattGTGCTGCTCACAATAGTTTCAAAGGAATAGAATAGA
AATTTCTAGCTGTGCGCTTATTGGATGGCGCTCCAATAAAACAATCTGGT
GGAATGCGGCCTTCAAACGTTCATTCTCGATTATTAATGCGCTTGCGGGG
CATTCtcagcgacagctacttgctagtttaaGAACACTATCTAATTTCAC
ACTTTTATCTGCAGATAGTCAGTTTTAGGGTATATGAGCTTCTCAAAGGA
CTCAGCCAAAAACTCTAGGCATGACCTTGAACCCCCCTGCACCTAGTATG
TTACTatgttttttcatattttaaaatCAATAGAGTCAATAAAATAAACG
AGAATGGCTGTTCAATACGCACCACAAAAATTGACAGTACCCGATGGTTT
CAATAATCTTCTTGAAGGTTTGGCACGAGAAGTTCTAAGAGAACAACCAG
AAAACATCATCAAATTTGCAGCTGATTATTTCAAACAACAGGTTGCTACT
AGAGTcggtaagttttttttattgtttttataagatttctaaattttaga
aattttatataAAGAATCAGTGTAACTCCAATGGGTCCTTTTGTTAATTT
TCGAATCATTTTAGTCACTTTTTTGTCCTCAAAGGGGCAGATACATAAAT
TTGCTACTATCAAGCTAAGGAGAGCCAGAAACCGTTTCAATTCGAAGGAT
TTAGGCTAATATCACCTTTGATATCCAGGCTTTAAGCTCTCTTTTGTATT
TTAGTGTTTCCAGGCtagagttatagaggttcgagttatgaaaaGTCGAC
GAGAAGTTGACTTTATCAACCATAACTTCATTGTCCGAAAATACACATCT
TCGAATAAGATGatttcacgtttttttataagaacatacaaaatttttga
agccttcggatgttcttaactttatgAGTTTTAAcaggttttaagcctaa
aaatgttctggacatattcttattttcgccattttttgagttttttttgc
ctattttcttaagaaatcgggtgttttagagtccgcgaagccttgaaatg
ttcttagcatgttcttaacatttttgccatcgaagccttatgttctgata
tagtttgttcttataaaagaaatgtgTACACATCTTCGAATAAGATGatt
attaaaaaatgtaaaagatctgGCTTGTTAAAAACCTgttaatttttgat
taattAGAATGTAATAAGTAAGGTTTGAATACGAGACTGTTCTTGTCTGC
ATCCTTTCATTATTACTTAGcaaattattttgtttcaaaagatgATTGTG
ACATTATTTTATAAATTCGCACCTACACAAAACCAAGCCGAAATCCTCAT
CTCACAAATATTTCATAGGAATATCCAAAGAAACTTTACCTTTCCAAAGA
ACTGTCTCTCGTAATCTACGGAAAAGCTTTTTTCTGAGACCTAcattaaa
gtttttgaaatttctagATAGGTCTAGTTAACTTTACATTCATCAATATG
GTTGGTCTTACAGCTAACGGTGGTGAACCACTTCCACCACGACCACAAGT
AAAATCTCAACCTATGAGCGATCAAAAGGAAGAGGCAGCGCCATCTCCAC
CGCCCTCAGCTAAAGAACCCACCCCACCACCGCCACAAGATATCGCCACA
GAAGAAGTTCAATCAACGGATGTTGACGAGGACAAAGAACAAGACTCTCC
TAGGTACTTAAGATCTACTCATATTCACGGTGTTCCGTTTTCTTCCAAAA
CTATATATAGACTTTTTTCTTATTGATTGCATCAAGTAACTAATTAAATA
AATCGATAGCTATATCTATCCggaggtaggggagggcgccactctttctc
cctagattgctccacttacccttggcccttctcttaattgctgagcatca
agcagagaggcatcaagtaccattttggtaATCTTCGGTATGACCCATTT
GGGGggtgaacccacaaccttgcgcaccgtaaccggatgctctaccacta
caCTACAGACGCTAAAATCAAGAACTAGCATATTTACTTTTGGCTTTTTC
AAGAAGAAAATGTCgaacaaaaataataattgattgaAGTCAATTCgctc
aatttttattttgtttcgNNNNNNNNNNNNNNNNNNNNNNNNNTCATGTT
CTTAATCAAGGTTGACTGAAGAACAAGCGGCAACAAAAATCCAAGCTATG
GTTCGTGGAAAGAAAGCACGTGGTGACGTTGAAGctttaaaagcatcaaa
atcaCAGACCGACGAGGAAACACCACAAGCTTCAGCtaccgaaaacgaaa
gtgaaaaagaaCGAAGTAATACCGATACCGAGGCGGAGGACCAAGTACAG
AGCGACGCGACAGCGCCAGAAAGTGAACCTGCTGCAAATGAATCACAAAC
AGAAGAATCAGAAGTAAAAGACGGCGCTGAAGTCGAAGAAGCTACGGAAG
AGGAATTAACAGGAGCCGCTCTAAAGATTCAAGCTACGTTCCGTGGTTCT
AAAGCGAGGAAAGCAGTTGCTGCTCAGAAGGAATCTTTGAACAATGTGAA
AACAACTGAAGAAGGCgatgaagataaaaatgaagagGTTGTTAATGAGG
ATAAAAAAGAAGAGGTGGTTGATGAGGAAGCAAAACCAGCCCCTCCTGAA
GAAGAGGGTGGTAATTAACGACCAACTTAACTTCTTCATGAACCTGAACT
CGTGTAATACATTCATAGTCTCAGTTGAATTCAAAGTACCTGGCACTCTT
GGTAATCAAACAATTTCATGTTTTCAAACTTATGATTAATTTATTGTCTT
ATACAATATTTCTCTCTCGCTTTGGTTCTTTAAAGATTGTTTTTTGCTTT
ActaaaaatctaacttttatcTCTTGAAATTAATGTCATTATTTGCAATA
TCTTTTTTGCGGGTTTGATATTTTATGGATTTAAATCCAAATGCAAACTC
CGGCTGAGCCTTTTCACCTTGGAGAGAGGAacattaaaactttttgtttt
tattttgtaaatatgtgatttttgaaaaatatataacgGTATAAATGAGT
GTTTCTTGCGCTCGGCAATCTCTCAAGTCATATTGTCTGTTGAAATTTGT
TGTATGCTATTTGTATTCTGTTCCTAcaaatgtaaattttgacaaataaa
aGTTTTTACCAAATACAAGTTGTCTGTCTACAAAAGGA Coding sequence (CDS) from alignment at scaffold_491:40908..44145+ >TCONS_00068963 ID=TCONS_00068963|Name=TCONS_00068963|organism=Clytia hemisphaerica|type=CDS|length=2556bp|location=Sequence derived from alignment at scaffold_491:40908..44145+ (Clytia hemisphaerica)
ATGGCTGTTCAATACGCACCACAAAAATTGACAGTACCCGATGGTTTCAA
TAATCTTCTTGAAGGTTTGGCACGAGAAGTTCTAAGAGAACAACCAGAAA
ACATCATCAAATTTGCAGCTGATTATTTCAAACAACAGGTTGCTACTAGA
GTcgCTAACGGTGGTGAACCACTTCCACCACGACCACAAGTAAAATCTCA
ACCTATGAGCGATCAAAAGGAAGAGGCAGCGCCATCTCCACCGCCCTCAG
CTAAAGAACCCACCCCACCACCGCCACAAGATATCGCCACAGAAGAAGTT
CAATCAACGGATGTTGACGAGGACAAAGAACAAGACTCTCCTAGGTTGAC
TGAAGAACAAGCGGCAACAAAAATCCAAGCTATGGTTCGTGGAAAGAAAG
CACGTGGTGACGTTGAAGctttaaaagcatcaaaatcaCAGACCGACGAG
GAAACACCACAAGCTTCAGCtaccgaaaacgaaagtgaaaaagaaCGAAG
TAATACCGATACCGAGGCGGAGGACCAAGTACAGAGCGACGCGACAGCGC
CAGAAAGTGAACCTGCTGCAAATGAATCACAAACAGAAGAATCAGAAGTA
AAAGACGGCGCTGAAGTCGAAGAAGCTACGGAAGAGGAATTAACAGGAGC
CGCTCTAAAGATTCAAGCTACGTTCCGTGGTTCTAAAGCGAGGAAAGCAG
TTGCTGCTCAGAAGGAATCTTTGAACAATGTGAAAACAACTGAAGAAGGC
gatgaagataaaaatgaagagGTTGTTAATGAGGATAAAAAAGAAGAGGT
GGTTGATGAGGAAGCAAAACCAGCCCCTCCTGAAGAAGAGGGTGGTAATT
AAATGGCTGTTCAATACGCACCACAAAAATTGACAGTACCCGATGGTTTC
AATAATCTTCTTGAAGGTTTGGCACGAGAAGTTCTAAGAGAACAACCAGA
AAACATCATCAAATTTGCAGCTGATTATTTCAAACAACAGGTTGCTACTA
GAGTcgCTAACGGTGGTGAACCACTTCCACCACGACCACAAGTAAAATCT
CAACCTATGAGCGATCAAAAGGAAGAGGCAGCGCCATCTCCACCGCCCTC
AGCTAAAGAACCCACCCCACCACCGCCACAAGATATCGCCACAGAAGAAG
TTCAATCAACGGATGTTGACGAGGACAAAGAACAAGACTCTCCTAGGTTG
ACTGAAGAACAAGCGGCAACAAAAATCCAAGCTATGGTTCGTGGAAAGAA
AGCACGTGGTGACGTTGAAGctttaaaagcatcaaaatcaCAGACCGACG
AGGAAACACCACAAGCTTCAGCtaccgaaaacgaaagtgaaaaagaaCGA
AGTAATACCGATACCGAGGCGGAGGACCAAGTACAGAGCGACGCGACAGC
GCCAGAAAGTGAACCTGCTGCAAATGAATCACAAACAGAAGAATCAGAAG
TAAAAGACGGCGCTGAAGTCGAAGAAGCTACGGAAGAGGAATTAACAGGA
GCCGCTCTAAAGATTCAAGCTACGTTCCGTGGTTCTAAAGCGAGGAAAGC
AGTTGCTGCTCAGAAGGAATCTTTGAACAATGTGAAAACAACTGAAGAAG
GCgatgaagataaaaatgaagagGTTGTTAATGAGGATAAAAAAGAAGAG
GTGGTTGATGAGGAAGCAAAACCAGCCCCTCCTGAAGAAGAGGGTGGTAA
TTAAATGGCTGTTCAATACGCACCACAAAAATTGACAGTACCCGATGGTT
TCAATAATCTTCTTGAAGGTTTGGCACGAGAAGTTCTAAGAGAACAACCA
GAAAACATCATCAAATTTGCAGCTGATTATTTCAAACAACAGGTTGCTAC
TAGAGTcgCTAACGGTGGTGAACCACTTCCACCACGACCACAAGTAAAAT
CTCAACCTATGAGCGATCAAAAGGAAGAGGCAGCGCCATCTCCACCGCCC
TCAGCTAAAGAACCCACCCCACCACCGCCACAAGATATCGCCACAGAAGA
AGTTCAATCAACGGATGTTGACGAGGACAAAGAACAAGACTCTCCTAGGT
TGACTGAAGAACAAGCGGCAACAAAAATCCAAGCTATGGTTCGTGGAAAG
AAAGCACGTGGTGACGTTGAAGctttaaaagcatcaaaatcaCAGACCGA
CGAGGAAACACCACAAGCTTCAGCtaccgaaaacgaaagtgaaaaagaaC
GAAGTAATACCGATACCGAGGCGGAGGACCAAGTACAGAGCGACGCGACA
GCGCCAGAAAGTGAACCTGCTGCAAATGAATCACAAACAGAAGAATCAGA
AGTAAAAGACGGCGCTGAAGTCGAAGAAGCTACGGAAGAGGAATTAACAG
GAGCCGCTCTAAAGATTCAAGCTACGTTCCGTGGTTCTAAAGCGAGGAAA
GCAGTTGCTGCTCAGAAGGAATCTTTGAACAATGTGAAAACAACTGAAGA
AGGCgatgaagataaaaatgaagagGTTGTTAATGAGGATAAAAAAGAAG
AGGTGGTTGATGAGGAAGCAAAACCAGCCCCTCCTGAAGAAGAGGGTGGT
AATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068963-exon-scaffold_491-1491911889:40908..41464 | TCONS_00068963-exon-scaffold_491-1491911889:40908..41464 | Clytia hemisphaerica | exon |
| TCONS_00068963-exon-scaffold_491-1510915933:40908..41464 | TCONS_00068963-exon-scaffold_491-1510915933:40908..41464 | Clytia hemisphaerica | exon |
| TCONS_00068963-exon-scaffold_491-1575043694:40908..41464 | TCONS_00068963-exon-scaffold_491-1575043694:40908..41464 | Clytia hemisphaerica | exon |
| TCONS_00068963-exon-scaffold_491-1491911889:42471..42660 | TCONS_00068963-exon-scaffold_491-1491911889:42471..42660 | Clytia hemisphaerica | exon |
| TCONS_00068963-exon-scaffold_491-1510915933:42471..42660 | TCONS_00068963-exon-scaffold_491-1510915933:42471..42660 | Clytia hemisphaerica | exon |
| TCONS_00068963-exon-scaffold_491-1575043694:42471..42660 | TCONS_00068963-exon-scaffold_491-1575043694:42471..42660 | Clytia hemisphaerica | exon |
| TCONS_00068963-exon-scaffold_491-1491911889:43118..44145 | TCONS_00068963-exon-scaffold_491-1491911889:43118..44145 | Clytia hemisphaerica | exon |
| TCONS_00068963-exon-scaffold_491-1510915933:43118..44145 | TCONS_00068963-exon-scaffold_491-1510915933:43118..44145 | Clytia hemisphaerica | exon |
| TCONS_00068963-exon-scaffold_491-1575043694:43118..44145 | TCONS_00068963-exon-scaffold_491-1575043694:43118..44145 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_491 | supercontig | scaffold_491:40908..44145 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000048 | IQ_motif_EF-hand-BS |
| IPR003117 | cAMP_dep_PK_reg_su_I/II_a/b |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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