TCONS_00068981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068981
Unique NameTCONS_00068981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068981 ID=TCONS_00068981|Name=TCONS_00068981|organism=Clytia hemisphaerica|type=transcript|length=1475bp
TCAGATTTGAAATTGTCAGAAGCAAGAAATTAAAACATccaaacaaaatg
gcgaaatCAATCACACTACGCAACAAAGAAgaagttttaaaattcatcGT
AAACCATCGTGTTAATATTTACGCTGTAACAGCACTACTCATTCATATTT
TTCTCATCATTACCGTACTGGCAAGTAACCAATGGGTCCTTGGCAGTACC
TCATACAGACAAAAAACACCTACTTATTCATTTggtttgtttaaaaattg
tgcaCTCGATAGGATAACTGGTTCGGAAATAGTTTGTGCTTCGTATGATT
CAACCTCTTGGCTTGATGGTGTTAAAGCGCTACTTATCATACCTCTTTTA
CTTTTATTCTTGATGACCCCGGTTATATTCATTGGATATTTGGGAGAAAA
CGGAGATGAACAAGTCAATGCTTGTAAAATAGCCCATGGGACATCTTTTA
TAGCAGGCACCCTCATTAGTGGAGCTTGCCGGCTATTCAGTCAACATTTG
TTGGATTTCCCTCTGCGAAGCTTAGAATTTGGCTGGCCATTCTGGCTGAC
CATAGTTGCAGGTGGTTTCTTCTTGatagaaattatgattttttaccctc
tcaaaaaatttgtaccaaagttttttgatataacTCAAAAGACCGAGGAA
ACATCACAAGAAGTGGTCCCAAGCAATGATTTTGAGAGTGCCATGAAGAG
TGCTGATGTGGTGACTTATTCTTATGACAATAAAGTGCCTGAAAAGGATA
TAAgtataaattaaatttgtatATAGAATTATTTATATAGGACATACTGT
ATGTTCAATTATTATTTTGCAATTATTGAATAAGAGGAAGGGAACACATA
AATATGTTTAATTTATAGAATAATCttagatcatattttcaattgtTTAG
TTACTAGTTGTTTGTAATTATTCAGTACCCAATAAGAGAGACCTAGAAAT
ATTTAAAGTTAGATAAGTTTAACTTCCTTCGGACTTGCACTTTATAATTT
TTCCATTCAAAGAAGAATATAAaatccaaattttattttaattttgtctg
ttatttttctttagaaaaaaatctattaaaatcCATACATTGTGTGAAGA
ACCTAGGAAGAAGAACCTAGAAAACCTCACTGAAAAAAAGACGAAATCCA
CTGAAACAGGAAGGCAGCATAAGTCGTAAACTCTTGGGAAAAGTCTCCAA
ATCTTCCAAATCACCATTGACTGCTACCACCACCTCCAAAAAAGCAATAC
TCCTTATGCACAGTCGTGTATGTGAAtagaaaatgtttgtttgtgATCAT
CTTTAGTTTAAGTGACCATTTTCCATTTAGTTTTCACCGATAATAAACGC
TCCCAATGCAATTGAACACCCCAGTAAACAAAACGATGTCAAAAATCCGA
AGGCCTAAAACAAAGACAAGATCAATATAAATCAAGGATTTACAGAGGga
gctctttaattcgaacctctataac
Run BLAST on NCBI

protein sequence of TCONS_00068981-protein

>TCONS_00068981-protein ID=TCONS_00068981-protein|Name=TCONS_00068981-protein|organism=Clytia hemisphaerica|type=polypeptide|length=253bp
RFEIVRSKKLKHPNKMAKSITLRNKEEVLKFIVNHRVNIYAVTALLIHIF
LIITVLASNQWVLGSTSYRQKTPTYSFGLFKNCALDRITGSEIVCASYDS
TSWLDGVKALLIIPLLLLFLMTPVIFIGYLGENGDEQVNACKIAHGTSFI
AGTLISGACRLFSQHLLDFPLRSLEFGWPFWLTIVAGGFFLIEIMIFYPL
KKFVPKFFDITQKTEETSQEVVPSNDFESAMKSADVVTYSYDNKVPEKDI
SIN
Run BLAST on NCBI

transcript from alignment at scaffold_491:29276..32299-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068981 ID=TCONS_00068981|Name=TCONS_00068981|organism=Clytia hemisphaerica|type=transcript|length=3024bp|location=Sequence derived from alignment at scaffold_491:29276..32299- (Clytia hemisphaerica)
TCAGATTTGAAATTGTCAGAAGCAAGAAATTAAAACATCCAAACAAAATG
GCGAAATCAATCACACTACGCAACAAAGAAGAAGTTTTAAAATTCATCGT
AAACCATCGTGTTAATATTTACGCTGTAACAGCACTACTCATTCATATTT
TTCTCATCATTACCGTACTGGCAAGTAACCAATGGGTCCTTGGCAGTACC
TCATACAGACAAAAAACACCTACTTATTCATTTGGTTTGTTTAAAAATTG
TGCACTCGATAGGATAACTGGTTCGGAAATAGTTTGTGCTTCGTATGATT
CAACCTCTTGGCTTGATGGTGTTAAAGCGCTACTTATCATACCTCTTTTA
CTTTTATTCTTGATGACCCCGGTTATATTCATTGGATATTTGGGAGAAAA
CGGAGATGAACAAGTCAATGCTTGTAAAATAGCCCATGGGACATCTTTTA
TAGCAGGTAAGGTTTTTTTTTATTGAAATCATCCTCAAACCGTTTGTTTA
CGACGTATCCCAAGCTTCAAATGTTTTTTACACGTCGACCAACTCTTTTG
CGTGTATCCAAGGTTTTTGACGTTTGTTCACACCTCCATCAGAGTTGAGA
AGCTAATGCTGGGCATAGGCGGTTTTAGACCACGTCGAATTTATCAGGGG
AAGAGATTTGTAAAAGTAATCTCATTGTCTGCGTTGCACTCCATCGCGTG
TTTCCGACGTACTTGCTCTATTGTCTTAAATCCGCCAGTGCTGTGAACTA
TGTTAGGCATTGAGTTTGAAGCCCCAAAGCGGCTAGATAGGAATCTTCAA
CTTCTCTCAAGCAAGAAAAAGTGAAGACTTAATTTTTACCCCGCACTTAA
AAGTTTTATGTGAAGACGTATACGTGGCTTCATTTTCCCATCCAGGAGTT
TCAGATCTAGCTCCTTTGGGGCTTGAAATCAATGCTCTTAGGTCCCTAAT
AAAGAATAGGTAAAGGAATGAAGAGGTAGAAAAAAAGTTCCAAAATCTAA
TAAACTAATAAAGGTTACATAGAGATTTGAATATCAGATTGCGTACCTAT
GAGAGTTCAAGGGTAAGTGCCTTATATGATAAACAAGTCTTTCTGCTAAT
GCCATTTTCTCTGATTTCTATATTCAATTATGTGTGAAAAGAAGTTGTTA
GTCACAAACTATAGAGTCACAATATTTTAGAGCAAGTAACAAACATGAAT
ACATACATGAAATCAAGTAACAAGTAACAAACATGTATACTGAAATATTT
CCCTTAAGATGCTCGTGTTACAAGTTAAATACTGTATGTCGTCATTTCTT
TCGACATATAGCGTCATGTCTTTCGACATATAGGATGTTCTCATTATTAC
AAGCCTTATAAGAAAATATTTGAAATTTTACAGATTTCTGATAGACCCTC
TCAGTGAGTAATTNTTCGATGTTCTCATCATTACAAGCCTTATAAGAAAA
TATTTGAAATTTTACAGATTTCTGATAGACCCTCTCAATGAGTAATCTCG
GTCATATCTTAACACAGTCGAAACAACATGGAGTTTACTTATTTGAGAAA
TATACTTTGATATTATTTAATATTCCCACACTAAAAAGATTTTCCATCCC
CATTAGCATTCAGCTTCTTCATTTTATCTCCGGTAACGAAAATCTCACAC
GGTAAATGAGACAGGGATGTCTTTCTCAACTGACCTGCAACGTTTTTTTG
ACGTACATATAGAGTTTTACGTATTTAGAGGTAGTAGATAAACGTCATTC
AGACGTTGTGTTCACCGCAGTAGCCAGGTTAACAGTACGGCACAGTTCCC
AAATCNGACGTTGTGTTCACCGCAGTGGCCAGGTTAACAGTACGGCACAG
TTCCCAAATCTTTTTGCATTTAAATTTACGAAAATACAGGTATCGGTTTT
CGTCTAGCTAGATCGTTATTTCCCTACAAAGTAAGATCAATGAAAAACCA
TTCTTAATTTTGAAAATTGGTTAAAATCAATTCAATTTTTTATTTTTTTA
CGTAGGCACCCTCATTAGTGGAGCTTGCCGGCTATTCAGTCAACATTTGT
TGGATTTCCCTCTGCGAAGCTTAGAATTTGGCTGGCCATTCTGGCTGACC
ATAGTTGCAGGTGGTTTCTTCTTGATAGAAATTATGATTTTTTACCCTCT
CAAAAAATTTGTACCAAAGTTTTTTGATATAACTCAAAAGACCGAGGAAA
CATCACAAGAAGTGGTCCCAAGCAATGATTTTGAGAGTGCCATGAAGAGT
GCTGATGTGGTGACTTATTCTTATGACAATAAAGTGCCTGAAAAGGATAT
AAGTATAAATTAAATTTGTATATAGAATTATTTATATAGGACATACTGTA
TGTTCAATTATTATTTTGCAATTATTGAATAAGAGGAAGGGAACACATAA
ATATGTTTAATTTATAGAATAATCTTAGATCATATTTTCAATTGTTTAGT
TACTAGTTGTTTGTAATTATTCAGTACCCAATAAGAGAGACCTAGAAATA
TTTAAAGTTAGATAAGTTTAACTTCCTTCGGACTTGCACTTTATAATTTT
TCCATTCAAAGAAGAATATAAAATCCAAATTTTATTTTAATTTTGTCTGT
TATTTTTCTTTAGAAAAAAATCTATTAAAATCCATACATTGTGTGAAGAA
CCTAGGAAGAAGAACCTAGAAAACCTCACTGAAAAAAAGACGAAATCCAC
TGAAACAGGAAGGCAGCATAAGTCGTAAACTCTTGGGAAAAGTCTCCAAA
TCTTCCAAATCACCATTGACTGCTACCACCACCTCCAAAAAAGCAATACT
CCTTATGCACAGTCGTGTATGTGAATAGAAAATGTTTGTTTGTGATCATC
TTTAGTTTAAGTGACCATTTTCCATTTAGTTTTCACCGATAATAAACGCT
CCCAATGCAATTGAACACCCCAGTAAACAAAACGATGTCAAAAATCCGAA
GGCCTAAAACAAAGACAAGATCAATATAAATCAAGGATTTACAGAGGGAG
CTCTTTAATTCGAACCTCTATAAC

Coding sequence (CDS) from alignment at scaffold_491:29276..32299-

>TCONS_00068981 ID=TCONS_00068981|Name=TCONS_00068981|organism=Clytia hemisphaerica|type=CDS|length=1524bp|location=Sequence derived from alignment at scaffold_491:29276..32299- (Clytia hemisphaerica)
GCACCCTCATTAGTGGAGCTTGCCGGCTATTCAGTCAACATTTGTTGGAT
TTCCCTCTGCGAAGCTTAGAATTTGGCTGGCCATTCTGGCTGACCATAGT
TGCAGGTGGTTTCTTCTTGATAGAAATTATGATTTTTTACCCTCTCAAAA
AATTTGTACCAAAGTTTTTTGATATAACTCAAAAGACCGAGGAAACATCA
CAAGAAGTGGTCCCAAGCAATGATTTTGAGAGTGCCATGAAGAGTGCTGA
TGTGGTGACTTATTCTTATGACAATAAAGTGCCTGAAAAGGATATAAGTA
TAAATTAAAGATTTGAAATTGTCAGAAGCAAGAAATTAAAACATCCAAAC
AAAATGGCGAAATCAATCACACTACGCAACAAAGAAGAAGTTTTAAAATT
CATCGTAAACCATCGTGTTAATATTTACGCTGTAACAGCACTACTCATTC
ATATTTTTCTCATCATTACCGTACTGGCAAGTAACCAATGGGTCCTTGGC
AGTACCTCATACAGACAAAAAACACCTACTTATTCATTTGGTTTGTTTAA
AAATTGTGCACTCGATAGGATAACTGGTTCGGAAATAGTTTGTGCTTCGT
ATGATTCAACCTCTTGGCTTGATGGTGTTAAAGCGCTACTTATCATACCT
CTTTTACTTTTATTCTTGATGACCCCGGTTATATTCATTGGATATTTGGG
AGAAAACGGAGATGAACAAGTCAATGCTTGTAAAATAGCCCATGGGACAT
CTTTTATAGCAGGCACCCTCATTAGTGGAGCTTGCCGGCTATTCAGTCAA
CATTTGTTGGATTTCCCTCTGCGAAGCTTAGAATTTGGCTGGCCATTCTG
GCTGACCATAGTTGCAGGTGGTTTCTTCTTGATAGAAATTATGATTTTTT
ACCCTCTCAAAAAATTTGTACCAAAGTTTTTTGATATAACTCAAAAGACC
GAGGAAACATCACAAGAAGTGGTCCCAAGCAATGATTTTGAGAGTGCCAT
GAAGAGTGCTGATGTGGTGACTTATTCTTATGACAATAAAGTGCCTGAAA
AGGATATAAGTATAAATTAAAGATTTGAAATTGTCAGAAGCAAGAAATTA
AAACATCCAAACAAAATGGCGAAATCAATCACACTACGCAACAAAGAAGA
AGTTTTAAAATTCATCGTAAACCATCGTGTTAATATTTACGCTGTAACAG
CACTACTCATTCATATTTTTCTCATCATTACCGTACTGGCAAGTAACCAA
TGGGTCCTTGGCAGTACCTCATACAGACAAAAAACACCTACTTATTCATT
TGGTTTGTTTAAAAATTGTGCACTCGATAGGATAACTGGTTCGGAAATAG
TTTGTGCTTCGTATGATTCAACCTCTTGGCTTGATGGTGTTAAAGCGCTA
CTTATCATACCTCTTTTACTTTTATTCTTGATGACCCCGGTTATATTCAT
TGGATATTTGGGAGAAAACGGAGATGAACAAGTCAATGCTTGTAAAATAG
CCCATGGGACATCTTTTATAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042982XLOC_042982Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068981-proteinTCONS_00068981-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068981-exon-scaffold_491-1575043694:31844..32299TCONS_00068981-exon-scaffold_491-1575043694:31844..32299Clytia hemisphaericaexon
TCONS_00068981-exon-scaffold_491-1575043694:29276..30294TCONS_00068981-exon-scaffold_491-1575043694:29276..30294Clytia hemisphaericaexon
TCONS_00068981-exon-scaffold_491-1510915933:31844..32299TCONS_00068981-exon-scaffold_491-1510915933:31844..32299Clytia hemisphaericaexon
TCONS_00068981-exon-scaffold_491-1510915933:29276..30294TCONS_00068981-exon-scaffold_491-1510915933:29276..30294Clytia hemisphaericaexon
TCONS_00068981-exon-scaffold_491-1491911889:31844..32299TCONS_00068981-exon-scaffold_491-1491911889:31844..32299Clytia hemisphaericaexon
TCONS_00068981-exon-scaffold_491-1491911889:29276..30294TCONS_00068981-exon-scaffold_491-1491911889:29276..30294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_491supercontigscaffold_491:29276..32299 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0397732	0	0	0.0979977	0.0509144	0.192259	0.455076	0.342672	0.26033	0.736275	0.63565	0.718451	0.147449	1.24204	1.93966	3.77332	7.0518	0.430066	0.9583	1.86249	3.32781	0.601752	1.23521	2.22218	3.70041	79.4396	60.2962
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top