TCONS_00068983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068983
Unique NameTCONS_00068983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068983 ID=TCONS_00068983|Name=TCONS_00068983|organism=Clytia hemisphaerica|type=transcript|length=1631bp
TTCAGGCCTCACTTTTATTTTCTCAAACATGAAGAACGAAACATGTACGA
GTATATCAAATGCATATATTGTTACATGACATACAATATGTAGGAATTTG
GTAAGTTTCATGTTGACTTTATACCTAAATAGGTAAATAAGCATGACGGT
ATGTTTTGTTTCAACAAATATTCATCACTAAATAATGTCAGCACTTTTCT
ACCAGCCAAATATTTTAGAGACATCTTCCTACTTAAAATGTCTGTattac
aaaatttgaaaaatagtgTTCTGCATCCATTTGGTAAGTCGTTTTCAGAC
AAAGCCAAAACACCTAATTCTGATAGATTCCAATTAAGCATCGTTACTGA
GTCATATATCTCATGATCAGGTGGAAGATCATTAATTCTACAGCACATTA
TTTCTTTATTTGTATACAATTCACATGCTGTGAACACATGTTTAGTATCT
TTAGTTTCAGTAAACAGTTGGGAAGCAAGGATTCCAAACTTATTAATAAA
AGGTGATTCAGATCCATCattcaaatattcaaaatcgggaatagcttttc
cattgatTAACCTGAATACATGCTTTACTTCTGTATCTTTTTCAGGGGCA
CCAGGAGGCAATGGCACAATGAAATATATTAGCTTTGAAACTCTTCCAAA
ATAACCCCCAGTACAATTTCTTTCAATTGAATATGAATACAATAATTCTC
CATCGTAGTTAAACTCCTGGATTTCATATGTTGTACTGCCCACATTATTG
ATTGATTCTTGATAGAAAAACATCCTGTCGGTAGTATAATATCTCCAAGG
TTCAGAAAATAAATTCTCTTCAGGGCGACCAGGCATATCAACATACAGTT
TAACTCTCCTACCATGCCATATATTGGTTGTATCAGTAtggaaaatatca
acaaaacaatttggatCAAAATTATGCAGAGAAAATAAATCGCGTGGCCT
TTCATCAAATAACAAATAGGCTGAAAATTGGTCACCAACAATGAAATCTA
CATCCCAATAGTGAAACTTATCTGCATCATATTGCAATGAAAGATCTGGC
TTGGCTGAAGCTTCAACGGTCTTTGTTTGAAACTCTGTTTCTAAGATATC
GGAGAAGCTCAAATAGTAAAAATCTATGCTTGTTACTTTTGGTTTCTTCT
TTGATCTTATCAAGACTGCATGGATAAATGTAGCACCCAATGGGTTAAGT
TGTGACCAATTTGTGGAATATTCATCCATATGTGgcatttgaatttttaa
aagttttttttcaagtgcacaACTTTCTTTATTGTATGATATGATATAGA
CTTGATTTTCCTGCTCGACGTAATCATGTACACCTACTAAATAGTATTTT
CCAGATGAATCAAACCCGCTATTTAAGATACAGTCATAGTCGTTTCGAAC
CTTATCTGAAAGCAGGATTGGAGCACAATCTGTTCTCTCCTTATTTGAGG
GAGCAAACATTGAATGCTTTTTGCAATCCATTTTTCTGTATCATTGGCAT
AGGAGCACCATATTATATCAATATTTGCATAGttattataattattgata
CCTTGATAGAaataaaatgagaaataaaattagAATGAAACAAAATTATG
TTCATGAACAGTCCTAGCATTTGAACCTTat
Run BLAST on NCBI

transcript from alignment at scaffold_491:86128..87758-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068983 ID=TCONS_00068983|Name=TCONS_00068983|organism=Clytia hemisphaerica|type=transcript|length=1631bp|location=Sequence derived from alignment at scaffold_491:86128..87758- (Clytia hemisphaerica)
TTCAGGCCTCACTTTTATTTTCTCAAACATGAAGAACGAAACATGTACGA
GTATATCAAATGCATATATTGTTACATGACATACAATATGTAGGAATTTG
GTAAGTTTCATGTTGACTTTATACCTAAATAGGTAAATAAGCATGACGGT
ATGTTTTGTTTCAACAAATATTCATCACTAAATAATGTCAGCACTTTTCT
ACCAGCCAAATATTTTAGAGACATCTTCCTACTTAAAATGTCTGTATTAC
AAAATTTGAAAAATAGTGTTCTGCATCCATTTGGTAAGTCGTTTTCAGAC
AAAGCCAAAACACCTAATTCTGATAGATTCCAATTAAGCATCGTTACTGA
GTCATATATCTCATGATCAGGTGGAAGATCATTAATTCTACAGCACATTA
TTTCTTTATTTGTATACAATTCACATGCTGTGAACACATGTTTAGTATCT
TTAGTTTCAGTAAACAGTTGGGAAGCAAGGATTCCAAACTTATTAATAAA
AGGTGATTCAGATCCATCATTCAAATATTCAAAATCGGGAATAGCTTTTC
CATTGATTAACCTGAATACATGCTTTACTTCTGTATCTTTTTCAGGGGCA
CCAGGAGGCAATGGCACAATGAAATATATTAGCTTTGAAACTCTTCCAAA
ATAACCCCCAGTACAATTTCTTTCAATTGAATATGAATACAATAATTCTC
CATCGTAGTTAAACTCCTGGATTTCATATGTTGTACTGCCCACATTATTG
ATTGATTCTTGATAGAAAAACATCCTGTCGGTAGTATAATATCTCCAAGG
TTCAGAAAATAAATTCTCTTCAGGGCGACCAGGCATATCAACATACAGTT
TAACTCTCCTACCATGCCATATATTGGTTGTATCAGTATGGAAAATATCA
ACAAAACAATTTGGATCAAAATTATGCAGAGAAAATAAATCGCGTGGCCT
TTCATCAAATAACAAATAGGCTGAAAATTGGTCACCAACAATGAAATCTA
CATCCCAATAGTGAAACTTATCTGCATCATATTGCAATGAAAGATCTGGC
TTGGCTGAAGCTTCAACGGTCTTTGTTTGAAACTCTGTTTCTAAGATATC
GGAGAAGCTCAAATAGTAAAAATCTATGCTTGTTACTTTTGGTTTCTTCT
TTGATCTTATCAAGACTGCATGGATAAATGTAGCACCCAATGGGTTAAGT
TGTGACCAATTTGTGGAATATTCATCCATATGTGGCATTTGAATTTTTAA
AAGTTTTTTTTCAAGTGCACAACTTTCTTTATTGTATGATATGATATAGA
CTTGATTTTCCTGCTCGACGTAATCATGTACACCTACTAAATAGTATTTT
CCAGATGAATCAAACCCGCTATTTAAGATACAGTCATAGTCGTTTCGAAC
CTTATCTGAAAGCAGGATTGGAGCACAATCTGTTCTCTCCTTATTTGAGG
GAGCAAACATTGAATGCTTTTTGCAATCCATTTTTCTGTATCATTGGCAT
AGGAGCACCATATTATATCAATATTTGCATAGTTATTATAATTATTGATA
CCTTGATAGAAATAAAATGAGAAATAAAATTAGAATGAAACAAAATTATG
TTCATGAACAGTCCTAGCATTTGAACCTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042984XLOC_042984Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068983-exon-scaffold_491-1575043694:86128..87758TCONS_00068983-exon-scaffold_491-1575043694:86128..87758Clytia hemisphaericaexon
TCONS_00068983-exon-scaffold_491-1510915933:86128..87758TCONS_00068983-exon-scaffold_491-1510915933:86128..87758Clytia hemisphaericaexon
TCONS_00068983-exon-scaffold_491-1491911889:86128..87758TCONS_00068983-exon-scaffold_491-1491911889:86128..87758Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_491supercontigscaffold_491:86128..87758 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.2514	14.2426	6.5679	4.47501	12.9911	8.16847	8.38999	8.91435	3.88435	5.18184	5.71951	2.03511	2.37674	2.03183	3.55854	5.64938	4.47123	4.82198	1.15618	1.95883	4.90742	4.98274	29.1576	27.0493	3.83689	4.71466	4.90021	4.85068	18.7977	18.2148
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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