TCONS_00068990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068990
Unique NameTCONS_00068990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length637

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068990 ID=TCONS_00068990|Name=TCONS_00068990|organism=Clytia hemisphaerica|type=transcript|length=637bp
ttcTGAAAAATCATTCGAAATTTGAATTCTGATTAAAACGATGGAAGTCA
ATTTAAggcttttatcatttttagcaTTATGTATTGGGCTCGTTTCCGCC
ATTCGGTTTCGGCCCATGATACCCGGAGAACCATATTGGGATATTTCtca
atatcaaattttatcCAAAGTGACGCAGAGCTTCTGATCAAGAGAGATGA
GACAGTTTTACTTTTAATAATTTTGGGAACGCTACCAGACAGTCAGAATT
CGAAGAAGAGAAATCGATGAAAAGATCTGATTTGCGTAAATATCCAGTGG
ACCCAGCAATTCAGAGTCTTACTGGGACAACTCTTGGTGGTCTTACAAAT
AACATGTTTACCGGCGACCAGTTCACATTAACGTGAGGTTCGCTATGAGA
TTTGGCAAACTGCAAtgtcaaaaacaaaaatctacAACTTCTCTGGGCCC
TTCTGATACCGATATCGTTGAAAAGATTACGTAGTGTAACACATAGAGTC
AAAGCCCGGCAATTAAACCTCTCAGGATATGTAAGACATTATTCTTTGAA
TTGGACTTACCTTTTTCAAGccaagttttggcgtgacaTTGACTTTCGTT
TCGATGGATGTAGTCTTAGCTCTCTCGTAAAGGGTGG
Run BLAST on NCBI

transcript from alignment at scaffold_491:210724..212569-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068990 ID=TCONS_00068990|Name=TCONS_00068990|organism=Clytia hemisphaerica|type=transcript|length=1846bp|location=Sequence derived from alignment at scaffold_491:210724..212569- (Clytia hemisphaerica)
TTCTGAAAAATCATTCGAAATTTGAATTCTGATTAAAACGATGGAAGTCA
ATTTAAGGCTTTTATCATTTTTAGCATTATGTATTGGGCTCGTTTCCGCC
ATTCGGTTTCGGCCCATGATACCCGGAGAACCATATTGGGATATTTCTCA
ATATCAAATTTTATCCAAAGTGACGCAGAGCTTCTGATCAAGAGAGATGA
GACAGTTTTACTTTTAATAATTTTGGGAACGCTACCAGACAGTCAGGTTA
GTAATTGACCTTCTTCTTTAAAATCTCATTAAAATTTAGAGGAATAACTT
TCGGTGTAAAGAGTTGGACGGATTTGGTGGATTTACCCAATTTCAACCAA
ATTAAGTTGCCGTTAAAGTTTCGTCTTTCTCCACTATCCACCACATGTAA
TTGTTGATTTGAGATACGGTTTATTTCATCTAATTTCCAAATTTTTCAGA
AATTAAAAGCAGAATTTTGGCTCATTTATTTACGAATTTTAGCCGAAAAT
ATTCCTAAACAGCCTAATTTAAATCTCACCAAATTTCGTTTTTCTATTTT
CTAGCCACCCGTCAAATTAAGCTCCCTTAAAAGAAGCTATTTCGTTCATC
CACCAGATTAACTTCCGCCGAAATTACTTCCTAACGTATTTTATAAAACT
TTTATTAAGTTAAGCTAGTTTGGTTGAAAAGTACACCGTATTACTTCCGA
TAATGAGCAATGTATTATCTTATTTAAAACAAGCTCGCCAAAAACGACAA
ACTATTCTGTAACGTAAAAAGGCCAGTGCCGTAAAATTGGAGGTCCCGTC
AATGCATCGATCAGATTTATACCAACAGCGTTAGGAGGTCAGATTGAGGT
CGAAGGTACAGATAGTTAAGACAGGGGTGAATTTTAATATTTTCAATATT
TTCAGTGCAGCCCAAAAAAACCGGTCATTATTGTATTTGTTAACCGTTCC
CTTCAGCTTCGATTGATTTTTAGCGCTTTATCCAGGAAAAATATCGAAAT
AAAGTGAGAAATATAAGCGAAAAGAGATAAAAAATTGTTATAATTTTTGA
CGTCAGAAATAAAAAATGAGAGATAATTAACTTTATTTAACTTCCTTTTT
TAAGAATTCGAAGAAGAGAAATCGATGAAAAGATCTGATTTGCGTAAATA
TCCAGTGGACCCAGCAATTCAGAGTCTTACTGGGACAACTCTTGGTGGTC
TTACAAATAACATGTTTACCGGCGACCAGTTCACATTAACGGTAATTGAT
ATCTTCATCAGATTACATGTTTTTTATAAGAACATCCAAAATTTTTGAAG
TCTCCGGATGTTCTTAATTTTTTCAGTTTCATGCCTAAAAATGTTCTTAA
CATGTTCTTATTTTGACCATTTTTTGGATAATTTTCACCATTTTCCTAAG
AAATATGGTGTTTTTGAGCATGTTTTGGCTTTAAAAGTGGCATTAACTTC
AATAAGCTCTTAACTTTACCAATTTGTACTATTTTAATGAGGTTCGCTAT
GAGATTNATATGGTGTTTTTGAGCATGTTTTGGCTTTAAAAGTGGCATTA
ACTTCAATAAGCTCTTAACTTTACCAATTTGTACTATTTTAGTGAGGTTC
GCTATGAGATTTGGCAAACTGCAATGTCAAAAACAAAAATCTACAACTTC
TCTGGGCCCTTCTGATACCGATATCGTTGAAAAGATTACGTAGTGTAACA
CATAGAGTCAAAGCCCGGCAATTAAACCTCTCAGGATATGTAAGACATTA
TTCTTTGAATTGGACTTACCTTTTTCAAGCCAAGTTTTGGCGTGACATTG
ACTTTCGTTTCGATGGATGTAGTCTTAGCTCTCTCGTAAAGGGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042988XLOC_042988Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068990-exon-scaffold_491-1575043694:212324..212569TCONS_00068990-exon-scaffold_491-1575043694:212324..212569Clytia hemisphaericaexon
TCONS_00068990-exon-scaffold_491-1575043694:211329..211465TCONS_00068990-exon-scaffold_491-1575043694:211329..211465Clytia hemisphaericaexon
TCONS_00068990-exon-scaffold_491-1575043694:210724..210977TCONS_00068990-exon-scaffold_491-1575043694:210724..210977Clytia hemisphaericaexon
TCONS_00068990-exon-scaffold_491-1510915933:212324..212569TCONS_00068990-exon-scaffold_491-1510915933:212324..212569Clytia hemisphaericaexon
TCONS_00068990-exon-scaffold_491-1510915933:211329..211465TCONS_00068990-exon-scaffold_491-1510915933:211329..211465Clytia hemisphaericaexon
TCONS_00068990-exon-scaffold_491-1510915933:210724..210977TCONS_00068990-exon-scaffold_491-1510915933:210724..210977Clytia hemisphaericaexon
TCONS_00068990-exon-scaffold_491-1491911889:212324..212569TCONS_00068990-exon-scaffold_491-1491911889:212324..212569Clytia hemisphaericaexon
TCONS_00068990-exon-scaffold_491-1491911889:211329..211465TCONS_00068990-exon-scaffold_491-1491911889:211329..211465Clytia hemisphaericaexon
TCONS_00068990-exon-scaffold_491-1491911889:210724..210977TCONS_00068990-exon-scaffold_491-1491911889:210724..210977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_491supercontigscaffold_491:210724..212569 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0828919	0	0.0938545	0	0	0	0.213141	0	0	0.173045	0	0.0552056	0	0	0	0.050512	4.86709	4.28658	0.0881159	0	2.24405	2.36515	1.64231	1.48713	2.13594	3.41541	0.117507	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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