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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069004 ID=TCONS_00069004|Name=TCONS_00069004|organism=Clytia hemisphaerica|type=transcript|length=1944bpRun BLAST on NCBI transcript from alignment at scaffold_491:392288..401726- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069004 ID=TCONS_00069004|Name=TCONS_00069004|organism=Clytia hemisphaerica|type=transcript|length=9439bp|location=Sequence derived from alignment at scaffold_491:392288..401726- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00069004 vs. Swiss-Prot (Human)
Match: CND3 (Condensin complex subunit 3 OS=Homo sapiens GN=NCAPG PE=1 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 7.079e-60 Identity = 151/436 (34.63%), Postives = 235/436 (53.90%), Query Frame = 3
Query: 3 DDPETMLKCMTVASSMLYHVRKSAHLAKSSTLLTLKDELIFEGIKNEDPFIRNEAIKCLGHISLISKDFAAQHLVLFLQVAQVDQELLQITSVNTIFDLFLMYGLEGRYYLFSMQYKIFTIFAS*DAFKXFNTEQPXXXXXXXXXXXXDTTMVSQEEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKSNAGNAAESVLEIMVMFLEGESPDLRTSVAEGMAKLLISGRIVSAKILTRLILLWYNPITEDDIKLRHCIGVFLPLFSFENRSHQEIYEETFLPVLKTLLNAPTSSPLSRVDVTNVVDLLIQLTDVRNLVQFNVTTDTSQNNLLNSLETHVHDSLAMRLANEILSDPEDPDVKLFCKTLTQLAICPKNVATIRDLIELSSQITEVFEGNRVAKKSIEKFQSTLERLLIDGGGSMSSTGQESQDATV 1310
+D ET+ KC+ + +L + S L S+T+ + + LI GI + P +RN A+ CLG L ++DFA +H VL L ++LQI V KI + A D F E P K ++ + E T + S +EQE ++ A++VL+++ FL+ E +LRT AEG+AKL+ SG +VS++IL+RLILLWYNP+TE+D++LRHC+GVF P+F++ +R++QE +EE FLP L+TL NAP SSPL+ +D+TNV +LL+ LT L N TSQ+ +L VHD+LAM++ NEIL+ P P+++++ K L+ L + +DL+ L ++I E + +R +++EK + LE+ G + +QDAT+
Sbjct: 552 NDAETLQKCLILCYELLKQMSISTGL--SATMNGIIESLILPGIISIHPVVRNLAVLCLGCCGLQNQDFARKHFVLLL-------QVLQIDDVTI---------------------KISALKAIFDQLMTFGIE-PFKTKKIKTLHCEGTEINSDDEQES----------------------------KEVEETATAKNVLKLLSDFLDSEVSELRTGAAEGLAKLMFSGLLVSSRILSRLILLWYNPVTEEDVQLRHCLGVFFPVFAYASRTNQECFEEAFLPTLQTLANAPASSPLAEIDITNVAELLVDLTRPSGL---NPQAKTSQD--YQALT--VHDNLAMKICNEILTSPCSPEIRVYTKALSSLE---LSSHLAKDLLVLLNEILEQVK-DRTCLRALEKIKIQLEK----GNKEFGDQAEAAQDATL 913 The following BLAST results are available for this feature:
BLAST of TCONS_00069004 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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