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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069010 ID=TCONS_00069010|Name=TCONS_00069010|organism=Clytia hemisphaerica|type=transcript|length=4245bpRun BLAST on NCBI protein sequence of TCONS_00069010-protein >TCONS_00069010-protein ID=TCONS_00069010-protein|Name=TCONS_00069010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1116bp MSVSGIKSKRQSEKSSRKLNQKSKKLSRSWPNNIQKIFEDNHGPMVHNATRun BLAST on NCBI transcript from alignment at scaffold_491:435868..459739- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069010 ID=TCONS_00069010|Name=TCONS_00069010|organism=Clytia hemisphaerica|type=transcript|length=23872bp|location=Sequence derived from alignment at scaffold_491:435868..459739- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_491:435868..459739- >TCONS_00069010 ID=TCONS_00069010|Name=TCONS_00069010|organism=Clytia hemisphaerica|type=CDS|length=33510bp|location=Sequence derived from alignment at scaffold_491:435868..459739- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069010 vs. Swiss-Prot (Human)
Match: MFHA1 (Malignant fibrous histiocytoma-amplified sequence 1 OS=Homo sapiens GN=MFHAS1 PE=1 SV=2) HSP 1 Score: 156.762 bits (395), Expect = 1.839e-38 Identity = 158/620 (25.48%), Postives = 277/620 (44.68%), Query Frame = 1
Query: 688 KIDKLSHVNVLSLSKNQFSSGDGIVYLPPSFSRLESIKELDLRGNPLKTFPEVILNLQELCTLNMADCQLEDVPXXXXXXXXXXXXXXXXXXXXXXXV-VLDFPNLEQLYLTNNKI----SDISGIQMKSLLNLDVCENFIDQIPDVLTEKCCSLKQLVMKGNSITKIPKSIKNLKALKWLDLSQNLLTKIPKDIGEVSTLQYLNLSWNDLTALPESITKLNKLKKFYCGENPLQRPPYEIAKEGPDSIRSYFRALDGSAALTSKRLKLMILGNEKSGKTTLAKAIYSYE----------------EPEPVEERTIGMDFFEWK--DKNGLNVLIVDCAGQKKYILTHQIFMQTGILFAVVLNLKDYNMTEEAYNTMIGEWIELILTSVPNAVILIVPTFIDQCGSLEEIKQKCQHILTLVDXXXXXXXXXXXXYETRSKGSFERAHKLKRDDIPTLPASFLFRNSVEEETKIHHLHKEPRGGEVSSTEAVTFTPSADNKSKVY--LIPVSNRKHLHGLTLLREEIYRISNDETLCPNINREIPESWWKFEQLCNHEKDFKETLEVDELWKTVQEKKISFHTKEDMIEALKYFDSTSPILFL---PCVKDVVFLNINWLF 2463
++ L+H+ L +S N+ + +LP S S L ++ LD+ N L FP +L L L L+++ +L +P +I+ L LK L L ++ + +LE L L NN + + S +Q +LNL N ++ P L L++L + N +T +P I L L L L N + +P I E++ L+ L L N + LP+ +L+++ + +NPL +PPYE+ +G I +Y + L S RLKL+++G++ +GKT L + P PV + G++ W GL ++ D AG + Y + F+ G L+ +V+NL Y + T +G ++ + VP+AV+ IV T D CG E+++KC +D R+ + + E S+ + L RD F R++ K R F +++ ++ ++PVS R H L LR+++ ++ + PN++R +P SW E+L H + + W + + + T++ + AL Y + +L+ P +K+ VF N+ L
Sbjct: 153 QLGALAHLEELDVSFNRLA------HLPDSLSCLSRLRTLDVDHNQLTAFPRQLLQLVALEELDVSSNRLRGLPEDISALRALKILWLSGAELGTLPAGFCELASLESLMLDNNGLQALPAQFSCLQRLKMLNLS--SNLFEEFPAALL-PLAGLEELYLSRNQLTSVPSLISGLGRLLTLWLDNNRIRYLPDSIVELTGLEELVLQGNQIAVLPDHFGQLSRVGLWKIKDNPLIQPPYEVCMKGIPYIAAYQKELAHSQPAVQPRLKLLLMGHKAAGKTLLRHCLTEERVEGCPGGGDKEKCYPPSPPPVSK---GIEVTSWTADASRGLRFIVYDLAGDESYEVIQPFFLSPGALYVLVVNLATYE--PRHFPTTVGSFLHRVGARVPHAVVCIVGTHADLCGE-RELEEKC------LDIHRQIALQEKHDAEGLSRLAKVVDEALARD--------FELRSASPHAAYYGVSDKNLR------RRKAHFQYLLNHRLQILSPVLPVSCRDPRH-LRRLRDKLLSVAEHREIFPNLHRVLPRSWQVLEEL--HFQPPQAQRLWLSWWDSARLGLQAGLTEDRLQSALSYLHESGKLLYFEDSPALKEHVFHNLTRLI 734 The following BLAST results are available for this feature:
BLAST of TCONS_00069010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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