TCONS_00069034 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069034
Unique NameTCONS_00069034
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069034 ID=TCONS_00069034|Name=TCONS_00069034|organism=Clytia hemisphaerica|type=transcript|length=501bp
CTTTTATCCCAGAGCAGGCAGATTTTCAGGGTTTGAGCTGCTaccatttt
cattatttcaaagATTAAGTTTGAATTCagttttaagaacaaattaatcA
ACCCACAATAatggtcataatatattggcacttttggctaatttacaatt
tttcgaaaattgaagttcgagcgagaatgtcaatttttaggccttcaact
tgatttNTTTCAAAGATTAAGTTTGAATTCagttttaagaacaaattaat
cAACCCAGGCTCTGTTTTTAATTAGTTTGGAACTATTAAAACAAAGAATT
AACCTCGGAACTGCTCGGAATGGGCTTTTTCTGTTAATAAGAACCTAGGA
CATGAAACTTTTGTCTGGATTCGCATGgcttatgtacaaaaattaggatt
gaatttcaaaatttaagcaAAGATTGAGTTTTTGCCAAGGTTATCCAGTT
GCAGAAAAGGCCTGGAAAAggcacagaaaaatcaaaacacctattttaaa
g
Run BLAST on NCBI

transcript from alignment at scaffold_492:137466..138101+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069034 ID=TCONS_00069034|Name=TCONS_00069034|organism=Clytia hemisphaerica|type=transcript|length=636bp|location=Sequence derived from alignment at scaffold_492:137466..138101+ (Clytia hemisphaerica)
CTTTTATCCCAGAGCAGGCAGATTTTCAGGGTTTGAGCTGCTaccatttt
cattatttcaaagATTAAGTTTGAATTCagttttaagaacaaattaatcA
ACCCACAATAatggtcataatatattggcacttttggctaatttacaatt
tttcgaaaattgaagttcgagcgagaatgtcaatttttaggccttcaact
tgatttNTTTCAAAGATTAAGTTTGAATTCagttttaagaacaaattaat
cAACCCAGGCTCTGTTTTTAATTAGTTTGGAACTATTAAAACAAAGAATT
AACCTCGGAACTGCTCGGAATGGGCTTTTTCTGTTAATAAGAACCTAGGA
CATCAAACTTTTGTCTGGATTCGCATGgcttatgtacaaaaattaggatt
gaatttcaaaatttaagcaAAGATTGAGTTTTTGCCAAGGTTATCCAGTT
ATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACATGAAACTTTTGTC
TGGATTCGCATGgcttatgtacaaaaattaggattgaatttcaaaattta
agcaAAGATTGAGTTTTTGCCAAGGTTATCCAGTTGCAGAAAAGGCCTGG
AAAAggcacagaaaaatcaaaacacctattttaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043020XLOC_043020Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069034-exon-scaffold_492-1491911889:137466..137816TCONS_00069034-exon-scaffold_492-1491911889:137466..137816Clytia hemisphaericaexon
TCONS_00069034-exon-scaffold_492-1510915933:137466..137816TCONS_00069034-exon-scaffold_492-1510915933:137466..137816Clytia hemisphaericaexon
TCONS_00069034-exon-scaffold_492-1575043694:137466..137816TCONS_00069034-exon-scaffold_492-1575043694:137466..137816Clytia hemisphaericaexon
TCONS_00069034-exon-scaffold_492-1491911889:137952..138101TCONS_00069034-exon-scaffold_492-1491911889:137952..138101Clytia hemisphaericaexon
TCONS_00069034-exon-scaffold_492-1510915933:137952..138101TCONS_00069034-exon-scaffold_492-1510915933:137952..138101Clytia hemisphaericaexon
TCONS_00069034-exon-scaffold_492-1575043694:137952..138101TCONS_00069034-exon-scaffold_492-1575043694:137952..138101Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_492supercontigscaffold_492:137466..138101 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.70957	0.145769	0.193036	1.58973	3.06677	1.90999	1.96338	2.2096	1.88905	0.366706	1.43066	0.95539	0.571554	1.4198	0.938494	1.82537	1.00501	1.68158	0.166694	0.827344	1.08628	2.33559	0.216739	0.331867	3.04442	5.68459	0	0.291173	0.791491	1.33514
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069034 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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