TCONS_00069078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069078
Unique NameTCONS_00069078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069078 ID=TCONS_00069078|Name=TCONS_00069078|organism=Clytia hemisphaerica|type=transcript|length=1428bp
TATAGAATAGTAAAATACTAAGAGCTGCTATTTAAAGAAGAACCAGAAGA
GACGTTTAGGGGAGAGCagtcgaaaatacaaaaaataatattCATTGGTT
GTTTACTTCAAGAATATGCATTGAAATGGGCAAGCCGACTATaaaCGAGG
CTTTCAATGGGTCAGGCCGTAGCAAATTCCTGACGTTAATGTCCAAAATA
CGGGCCACGCAAACGTTAGGAGCGACGTTGACCAGTAAAGGGAATCATGT
ACGTGCATCTGCAATGTACAAAAAACTAATCAATGACTCATTGAGTATGC
GTGAACATTTTACGCGCCAACAGCAAAAGACGTTAGAAAGCGCGCTCAGT
TTTATGGACGCTGATCCTCCGCAAGacgaccaggctgtaaaccaagCTTG
GAAAATGCGTTCAGCTATTGATACGGTCTATGACGAATGTATATCCGACT
TTAACGACGTTCAATCCGCCATGCCGTCGAATCTTCAATCCGTCATTAAA
GACACCATCAATCTGGCGTCGGATTGCGTTGCCAACGGTAACCTTTCAAA
AGCGTTTATGGAATATACTAAATTACTAAAACAGATGAAACAGAACCAGA
AATACAAAGATTTGGTGTCACTGACTGCAAAGAATTTGGTGGATGGTTCT
CTTTGCTTTGCAGAAACGAGTACAGAAGATATGTCCACTAAAGTCCGCAA
GTTACGCGACAGTCTGGATCGTGTCTATAATGAAATTCGCCTGCCCGATG
TTTATGCACCCAGCTTGGGGCCATTGCAAAAATTGAACAAACGTGAGAAG
TGGCAAAAGAAGAAAGGTTTGATGGTGATTGATTTTCGACAGAAAGACGG
TTCACTATTTCAGTACGGTATGACAACGTGCAATGATCGAGTGATGGGCG
GATCAAGTGAAGCCAACACACAATTCGATGAGGTCAAAGAATGCATCGAA
TTTTCCGGATCCTTGTCTAAAAAAAACCGGGGTGGCTTTGCAAGTGTTCG
CATTCTACCAGATAATAAGGATGAAATGAAAGAATTGTTGAGTGGTACCA
AAGCTATATCGTTAGAGGTAATGAACCTCGATACAAAAAATATTCGTTAC
AAATTCCAAATGGCCAACGAGGCGCACTTGAAATCGTTTAATTGGCAAGC
TGAATTTATTGTAGAACCGGATGGCGAATGGCACACTGTTGTTTTGGATT
TGTATTCTTTTTGGCCTACCATGTTTGGTCACGTGTTATCGTCTCCTGGC
AACGTAGATTTTAGTAAAGTGGACTTTCTTGGTGTATTGATCAGTCACGT
GACAGTGGATGGGAAATTTAATCCGGACTTCGTAGAAGTCACACATGCAA
TGAGAATGACGTCACAAAGGAGTCGTCACACATGCAATGAGAATGACGTC
ACAAATGAGTTGCCACACATGCAATGAG
Run BLAST on NCBI

transcript from alignment at scaffold_493:190268..196114+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069078 ID=TCONS_00069078|Name=TCONS_00069078|organism=Clytia hemisphaerica|type=transcript|length=5847bp|location=Sequence derived from alignment at scaffold_493:190268..196114+ (Clytia hemisphaerica)
TATAGAATAGTAAAATACTAAGAGCTGCTATTTAAAGAAGAACCAGAAGA
GACGTTTAGGGGAGAGCagtcgaaaatacaaaaaataatattCATTGGTT
GTTTACTTCAAGAATATGCATTGAAATGGGCAAGCCGACTATGTaagatg
atttttttaaattcctgCCTGGGAGGGGGGCACTGTCTGAAAACGGCAAA
ACGACTCTATGTGCTGTATTTAGGATACTAATTATAACACATTTGGTGTT
AAATTGGACCCTTAAGaagaattaaaaataattttgccgaaaatcaaGCC
TAGTTTGCAATCTTTCCTATATCTTTCGAAATTAcactaatttctttttt
tcccaaattttacgGTCCATATAATGCATGCTGTAATAAATCATAATCct
gaattctttttcttttttaaaattcttagaaaCGAGGCTTTCAATGGGTC
AGGCCGTAGCAAATTCCTGACGTTAATGTCCAAAATACGGGCCACGCAAA
CGTTAGGAGCGACGTTGACCAGTAAAGGGAATCATGTACGTGCATCTGCA
ATGTACAAAAAACTAATCAATGACTCATTGAGTATGCGTGAACATTTTAC
GCGCCAACAGCAAAAGACGTTAGAAAGCGCGCTCAGTTTTATGGACGCTG
ATCCTCCGCAAGacgaccaggctgtaaaccaagCTTGGAAAATGCGTTCA
GCTATTGATACGGTCTATGACGAATGTATATCCGACTTTAACGACGTTCA
ATCCGCCATGCCGTCGAATCTTCAATCCGTCATTAAAGACACCATCAATC
TGGCGTCGGATTGCGTTGCCAACGGTAACCTTTCAAAAGCGTTTATGGAA
TATACTAAATTACTAAAACAGATGAAACAGAACCAGAAATACAAAGATTT
GGTGTCACTGACTGCAAAGAATTTGGTGGATGGTTCTCTTTGCTTTGCAG
AAACGAGTACAGAAGATATGTCCACTAAAGTCCGCAAGTTACGCGACAGT
CTGGATCGTGTCTATAATGAAATTCGCCTGCCCGATGTTTATGCACCCAG
CTTGGGGCCATTGGTAAGTGTTTGGTACTTTCTTCTTCCAAAATTCTAGA
CTAGCCGAATCAGATTGTTTTACTTAGACAAATATAGTCTTTTTGAACTG
CATCATTGTCGGCCTCGTTCTCAAATAAAACACCAGCGCACAACGagaga
aaaaattttggggATTTTTCAGAATGCGTTATcgtggaaaattgaaaaac
tgcCACCCCGCCAAAACATTTATCGCCATAATTTTTAGTTTgttcatttc
aaaaaatgctcatttttttggttaaaaaaagaaCCGACTCACCCTTCttt
atttagtgattttgaTGCATACCAAAAAAAGTTCGTCCCTTAGATATGTT
ACCAATTTCTTAAGTCTTAAGTTAACGCAGAGGAATATTCGTTCTTttag
tttgttttcttttaccTGCGTATATACTTCTCGTGATGAAAATTTCCATC
ATGTTTTTCTTACATTCGGAAGCCTCTTGTGGTGAGATATTGACGTCTGT
TTATTCTTATGAGAGCAACGAGGCAACATGATTGAAGCTATGAGACCACA
TACATACATGCATAGTTTAGGCAAAAACTTTAAGCGGGACGATAACCCCT
ATGGACGCTACCTATCCTTTTTTCTATCAAACCATAAAATTGATTTTCCA
AATCTCCTAATTTTCCTGGAATCGAGGTATCAAAATAATGAGCTTTTTGG
CATTGCTTGCTTGACTTTTGATtgaaatagtcctgaatgaaGTCTAGTAA
ATTTTGTGGCAAATAGGAAATTGCCATCCTGACATTTGAAATTCGCTAAA
AATTCTACTCCCTTCGCTTGCAATCCAGATCTTTCGACATTCTGATATTT
CTCATTCTTTTTTACTAAGCTATCTAGCCTTACCAATGAcctttagggaa
atactgaaaactTTTCCAATAGTTTCTGATAGTTTTAAAATGTCTGGAAA
AATGTGGCTTTTGAGACTAAAAGTTTGGAATTTCCAGCTTGGCGAACCCG
TAGCAACCCTGAACagaacatgataagaatacttttaggctttaaaatca
aaaagttaaaaacatccaaaggctttcaaaaattttcgatattcttataa
aaaagagcgtGTATTTAGTTACCTCTATTTCAAGATCTCGTTAAATTTGA
CTTTATTCAATTTTGTGGTGTAATTTGATATCAAGATTGGTACTTAGATG
ATTCCGACAAGactaataaaaaaagttttcattggGATAATGATTCTGCA
TTGTCAATTATTATTCAGGGATTTATTTGAGGAAATAGAACAAATTTAAC
ATGAAAAGTAACATTTCGCGAATTTTCTATATGCATGACAAAAATgatca
tgatttttttttgttacctGTTATTTTACTTCCTGTCGAATTGCAAAACT
CCTTTTCTATTGTCGAACACGGTTTGTCATGTCAATAAATTGTAATTATC
TATAATTGCCTCATTGTCGTTTACtatacattttttaaaacaCTCTTTTA
ATCAAAAATGTTTTATGTTGGTGTTGACGTCAGAGTCGTTGTGGtatcat
taaaaaatttcaaaatgtttttttgtaaaagtaatCAGCGTACAATTAAT
TGAACCCAATTGATTTCCATATGAAATGAAACAGGCCCAATATGATGCAA
ACCAAATATTTCTTGCAACCTAGTTGCTGAAAAATACATACATAGTATTT
TGTTGCCTCCAATTTTTATTATTCTTAAGTATCTGAATTTGAACAGCCTT
GCCTAAACCCAGTTCCTAAAGTTAAGACCGAAAGTTGTGATTTagcaccc
ctgtgtcatagacccgctggaaccccagccccactcgaaaatttggctaa
aagttcgttcccggtgggaaaaataccataGAATTTCGgacccactggga
aattgactttgatttcacccccattcgaaattcaatgtttaaaaattgca
ctccaaaaccatccatactggatttttggacctaccccggtggaggtcct
ataaattaacctttgtccgttcgttagttaccagcttttctcaagattgg
ctcattagttttttataattttttgcgcaaagatgtgtaactataaaccc
tcaaatgtgaccgagcccgattttcgaaaaaaaaaagatttctgcctcag
aaaatatacagtgggaaattcgaatttagcgctgtcctcacttactaaaa
taaaaaccaaatttcggaagttacgctttctctaagaaagtaaaagaata
acaaaatttgattggctgtgttttcaaccgtcattaggatctgggaaatt
caaactctcaacccaaaccatgctatatatttcaccATCAGTacatagaa
taagaaatcatagcatggatctccaggctaggaAAGGtatcaccggggct
gtgagacaggggtgtgatttAGGGCATGAACCAGGGATCATATACCTTTG
ACGGGTACATACATTACGTGGAAAATAACATgtacttttttcatattgac
aAATCTCAATTGCCCTTAACCAAAGTGCCATGGAAATAACAAtaagtgtt
tattttttctattacGAATAACGAAGCAACAATAATAATGATACCATTCA
AAACGATCGGTATgtaaaagaaaacattaaattgGTTTCCTTTAtattga
ctgtttttttaaagaagtcaaGGTCAGGGAATCCCCTCTGttcattacac
gttttttttataaggaacacgtatatagggaacttgaggctgaaaacgGT
CTGAAAAAATAAGGTATTGTTAAGGGACTACTCAGGATGagaacaacaaa
aaaacttaaGGAACAGACGGTTAAACTTGAATTTGCTCTCATTTACAAAA
ACCTAAACAGATAGATGGCAAAATATTGATGAAAAAACATTCAATAAGTA
tcaattcgaactaaaacattggtctcatcgaatttttctctaattcgaag
aagattcttcatgccttgaaaatcgaattagagagagtcaactgtatatt
tttatttttttcacatgcttgtttaaaaaaaagccGAACAAGATTAAAAT
TGATGTTCATATTCGGTTGGTTCGGTTGGGAGTCTCCCCGAGCGGTAACT
CTGGTCACGATACCACGCAATTTTTTGTACTCGGTCACGTTCAcgcaaat
caacaaaaaaaatggataatcacgcatccctttgaaaaaaagttcgaatc
acgcatcacggctcaatctttcaaatcacTGATCACGTTTTGAGCTCTGA
TCACGCAAGCACGAAAAAATGTACCTATCATTACATCACGCAGATCTCTT
CGGACTTACGATAAGGCCTCTCCGAATTCACAATAGTTTTAAACTTGTTT
TCATTCTGATTTCAGCAAAAATTGAACAAACGTGAGAAGTGGCAAAAGAA
GAAAGGTTTGATGGTGATTGATTTTCGACAGAAAGACGGTTCACTATTTC
AGTACGGTATGACAACGTGCAATGATCGAGTGATGGGCGGATCAAGTGAA
GCCAACACACAATTCGATGAGGTTCGTGTGATAAAGTTCGCATTACCTTA
Ttgcacgaatattactagtcattttattaacacgatttgaaaaatttcat
gttgataaaaaaacccttaattaaaaccaaccATTTTCATTACTAcatgt
taacgaccaaccaaatccaataagatcttgtaaaaactccagcttggcCC
TTGcaaaagcaataaaattcgtgttaatttttggCGTGTTAATCTATAGG
GCGTTAAATACATCTTTACttatattcgtgtaataaggtataaagaaatt
tttataaaaaaattaaattaaaatcgAGGGACCTTTGTTGAAAGCTAATT
TATACATATATAACGCTGCCTGATCTCCATTTGAATATCATTGACCTGGC
TTTAAATAGGCTTTTTGATTTTGTCCCTTGAGacatgaaatgattttttt
atgaatcgaaagtagttttgataaaatccgaTGGGAGttgatcaccatgg
caataatttcaaaacgagacaagtgttgttcgtgacgtaatttatgaaaa
ggtctattaaattTGTGACAACCCTTATATTTTCTAGGTCAAAGAATGCA
TCGAATTTTCCGGATCCTTGTCTAAAAAAAACCGGGGTGGCTTTGCAAGT
GTTCGCATTCTACCAGATAATAAGGATGAAATGAAAGAATTGTTGAGTGG
TACCAAAGCTATATCGTTAGAGGTAATGAACCTCGATACAAAAAATATTC
GTTACAAATTCCAAATGGCCAACGAGGCGCACTTGAAATCGTTTAATTGG
CAAGCTGAATTTATTGTAGAACCGGATGGCGAATGGCACACTGTTGTTTT
GGATTTGTATTCTTTTTGGCCTACCATGTTTGGTCACGTGTTATCGTCTC
CTGGCAACGTAGATTTTAGTAAAGTGGACTTTCTTGGTGTATTGATCAGT
CACGTGACAGTGGATGGGAAATTTAATCCGGACTTCGTAGAAGGTACTTT
CGGTTTAGGTGTGCGTTCGTTGAGCTTGatcaaagatgaagatgaaAGTT
GACGCAAAGTTTACGGCGTATTTCCACTGTGTAACTTTTCTTTATTTAGC
TTTATTTGTGTATCTTGCAGGTGACGATATGTTTTTTTTCGTTTAATCtg
tctttgttaaaagtgtaaaagttGTGTAtagaagaatttttttatctcgT
GATGGAGTCACACATGCAATGAGAATGACGTCACAAAGGAGTCGTCACAC
ATGCAATGAGAATGACGTCACAAATGAGTTGCCACACATGCAATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043047XLOC_043047Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069078-exon-scaffold_493-1491911889:190268..190409TCONS_00069078-exon-scaffold_493-1491911889:190268..190409Clytia hemisphaericaexon
TCONS_00069078-exon-scaffold_493-1510915933:190268..190409TCONS_00069078-exon-scaffold_493-1510915933:190268..190409Clytia hemisphaericaexon
TCONS_00069078-exon-scaffold_493-1575043694:190268..190409TCONS_00069078-exon-scaffold_493-1575043694:190268..190409Clytia hemisphaericaexon
TCONS_00069078-exon-scaffold_493-1491911889:190697..191330TCONS_00069078-exon-scaffold_493-1491911889:190697..191330Clytia hemisphaericaexon
TCONS_00069078-exon-scaffold_493-1510915933:190697..191330TCONS_00069078-exon-scaffold_493-1510915933:190697..191330Clytia hemisphaericaexon
TCONS_00069078-exon-scaffold_493-1575043694:190697..191330TCONS_00069078-exon-scaffold_493-1575043694:190697..191330Clytia hemisphaericaexon
TCONS_00069078-exon-scaffold_493-1491911889:194683..194838TCONS_00069078-exon-scaffold_493-1491911889:194683..194838Clytia hemisphaericaexon
TCONS_00069078-exon-scaffold_493-1510915933:194683..194838TCONS_00069078-exon-scaffold_493-1510915933:194683..194838Clytia hemisphaericaexon
TCONS_00069078-exon-scaffold_493-1575043694:194683..194838TCONS_00069078-exon-scaffold_493-1575043694:194683..194838Clytia hemisphaericaexon
TCONS_00069078-exon-scaffold_493-1491911889:195405..195810TCONS_00069078-exon-scaffold_493-1491911889:195405..195810Clytia hemisphaericaexon
TCONS_00069078-exon-scaffold_493-1510915933:195405..195810TCONS_00069078-exon-scaffold_493-1510915933:195405..195810Clytia hemisphaericaexon
TCONS_00069078-exon-scaffold_493-1575043694:195405..195810TCONS_00069078-exon-scaffold_493-1575043694:195405..195810Clytia hemisphaericaexon
TCONS_00069078-exon-scaffold_493-1491911889:196025..196114TCONS_00069078-exon-scaffold_493-1491911889:196025..196114Clytia hemisphaericaexon
TCONS_00069078-exon-scaffold_493-1510915933:196025..196114TCONS_00069078-exon-scaffold_493-1510915933:196025..196114Clytia hemisphaericaexon
TCONS_00069078-exon-scaffold_493-1575043694:196025..196114TCONS_00069078-exon-scaffold_493-1575043694:196025..196114Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_493supercontigscaffold_493:190268..196114 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.4512	50.8417	109.192	116.941	35.3359	28.0146	37.7363	34.0575	60.9446	63.3051	41.9612	50.6687	47.7764	43.2068	57.4248	36.1216	43.8405	39.2969	26.3065	42.0703	34.9067	34.344	40.2124	44.9062	42.0034	36.3139	29.9156	21.1578	23.5422	26.6453
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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