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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069083 ID=TCONS_00069083|Name=TCONS_00069083|organism=Clytia hemisphaerica|type=transcript|length=1031bp
aaaataaCCTAGGGATATTTCAAAATACCCTCTGGAGAGAAAAATTAAAG
ACTCCCTAGTAAGTGTTTTTTTATTCTCGAAATCAAAGTTTatataaaaa
tcaaactttttcgCATAAACAAAAGTGTGCAAAAAAAGGGGCCACCTACC
CAATATAATTGACTTAAAGTTCCTTATTGGTGGAATTTGAAAAGAGGGGA
GGGGAGCTATTAAAAGtataaagttaattttttttctatccttttgttcT
ACTAATTATTCTTCTTGAGACAAACAATAGTTTTCTGAAGTTGAttaact
ttcttttgtttaaaagctCCCATAGAACAATAACCACAATAGAGTATTTT
ATTTATACTTtgatttataatattttttggaaCAAAAGAGTTGCAGGGGG
AGGTCAACCCCTTTTTTGATAGTTTGTTTTAATTTGGTTAAAAGCCCATc
gagtttttcttttccttttttgcgTTAAAATAATTCCGATACAACGAGTA
AATTTCACACAGTTGAGAACGCTTACTCATTCGCTTTCAAAACATAGTTT
GAATTAGCCGTCGGGTTTTACTCTAGGAAAACATGTCCTTTAGTATTGAT
GCTCTTTTAAAGCCTGATCATAAGGAGAGAAGAAATTCAGGGAGTGAAAC
CGTAAGGCATCACTTTCATTATGATTTTGACGATTATGGAAGTGTTAGAT
CGTATCGAGGAGAAGACCAAAGAAGACGGAATGTTGTGGAAGACTTTATT
AAAAGTGGTCCAGATGAACTGCTTGAAGAACACAATCACAGTCTTGAATC
ACCAACGACTTCATCTGATGTTAAGACACACCGCAAAAGACGGATTCTCT
TTACAAGAGAACAGACGTACGAGTTACAAAAAGTCTTTCAATATCAACAA
TATTTGACAGTTCCACAACGTGATTTCTTATCAAGGAAAATCAACTTGAC
ACCAACACAGGTATGAGTATTCATGATAgacaccactggagagtcttctg
agaactttttctattttttaagtgacgtatt Run BLAST on NCBI protein sequence of NK2b homeodomain transcription factor protein >TCONS_00069083-protein ID=TCONS_00069083-protein|Name=NK2b homeodomain transcription factor protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MSFSIDALLKPDHKERRNSGSETVRHHFHYDFDDYGSVRSYRGEDQRRRN
VVEDFIKSGPDELLEEHNHSLESPTTSSDVKTHRKRRILFTREQTYELQK
VFQYQQYLTVPQRDFLSRKINLTPTQV Run BLAST on NCBI transcript from alignment at scaffold_493:214507..217155+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069083 ID=TCONS_00069083|Name=TCONS_00069083|organism=Clytia hemisphaerica|type=transcript|length=2649bp|location=Sequence derived from alignment at scaffold_493:214507..217155+ (Clytia hemisphaerica)
aaaataaCCTAGGGATATTTCAAAATACCCTCTGGAGAGAAAAATTAAAG
ACTCCCTAGTAAGTGTTTTTTTATTCTCGAAATCAAAGTTTatataaaaa
tcaaactttttcgCATAAACAAAAGTGTGCAAAAAAAGGGGCCACCTACC
CAATATAATTGACTTAAAGTTCCTTATTGGTGGAATTTGAAAAGAGGGGA
GGGGAGCTATTAAAAGtataaagttaattttttttctatccttttgttcT
ACTAATTATTCTTCTTGAGACAAACAATAGTTTTCTGAAGTTGAttaact
ttcttttgtttaaaagctCCCATAGAACAATAACCACAATAGAGTATTTT
ATTTATACTTtgatttataatattttttggaaCAAAAGAGTTGCAGGGGG
AGGTCAACCCCTTTTTTGATAGTTTGTTTTAATTTGGTTAAAAGCCCATc
gagtttttcttttccttttttgcgTTAAAATAATTCCGATACAACGAGTA
AATTTCACACAGTTGAGAACGCTTACTCATTCGCTTTCAAAACATAGTTT
GAATTAGCCGTCGGGTTTTACTCTAGGAAAACATGTCCTTTAGTATTGAT
GCTCTTTTAAAGCCTGATCATAAGGAGAGAAGAAATTCAGGGAGTGAAAC
CGTAAGGCATCACTTTCATTATGATTTTGACGATTATGGAAGTGTTAGAT
CGTATCGAGGAGAAGACCAAAGAAGACGGAATGTTGTGGAAGACTTTATT
AAAAGTGGTAAGTAAATATTTTGTCTTCAAGATCAAGTTTGTACCCTTCT
CAATTTTCTTTCAAGACAAGAAAGTAAGATGATAAAgacacctctgtctc
acagccccggtggaacttttttcctcagtggggaataaaaattccttttg
aagCGGGGCTGTAATTTAAGGGTATTTTGccactggggacgaaatttctg
cttaattttccagtggggctggggtcccagtgggtctgtgacacaggggt
gtagaaATTAAGACGACAAAGTCTGAATGCGAGAGCCCTGTCCCGTGAAA
AAAGTAAAAGCGTGTCTTACAGatgatgaaaaagatgaaagttCCAAAAA
AAGCCTTTGTGCAAGCATTTTTAGCTACTAGTATAAACCTTCATCCAAGT
TAAAAGGctggctctgaccatagtcaaacaATTTGTTAAGggatttgaag
ataaaatttTGTTTGGGTTCCTtgacatttttaacaaaaagatTGCCTTT
ACAAGTTATTTGATAATGTATTCTgtcaagagtaattaagaattaaatta
cagaaatgacgttatgaactttaaaaataaaattaataaaatgttACATT
AACCTCTTAACAAAAATGCTTTTCTTTCgaaattgttttaaattgtcCGC
AAAGAAATGaactgttttaatttttttcggaagaattttctaaatagatg
tatcaaaaattatgaccgtttttccactaaaaatcggcatggaaaattgg
tcaaaaaccacttttttaagataaaaTTGATTCAAAGaagctttcacaaa
aatgttccgaaaatctaattttagtttggttaaagatCATCATCTAacac
aaaaatttttcaaaatgttttttcttcgcctaAAATAAGGTCCTCGAAGT
TGAAATGCTCtttttcgcaaaagtcttcattttcttcttcatcaagtTTT
TTAATcgcattttttaaattttcagatttaggAATAGTTGGCCTAGCAAA
AAATCTATAAGATGCCATAGTTTTGAGGCAAAAATCTATATTCTATGCAt
ggcaaatatgaaaaattcactatggtcaaaGCCCTTAATACAGTAACGCC
ATACCTCGAACACGGACGGGGGACACAGTaaaattgttcgagttatggaa
attttGTTTCGAGGTATCAGGTTAATGTAATTTGAAACAATcgaaatcag
ccatatttgtttgttttttttttattttgacatgtgacatttgttttgat
tttgtatcccgctgcatacggtttgtttacaaatttcgccatacttttat
gtccctttaagacaCGAAATCGGATTGATTAAAATTAAAGATAACAAAGA
GATTCGAATATTCGGTATTCTAGGAAATTCTGCCTCTGTGGTGGGTGTAA
AGCCCGGTTGAGGCACTCAGGTGAAAATGGGAccgggacgtgccgctggt
cagggtcccttttctAGGTTCTTAAAATATATGACAGTgtcccaaattta
ctatttttaacatttgtacCTGCCAGAGTcatcttttggttattttggac
aattttcagggtggaaattagaaaaatttatttagacaATGAAAAAGATA
TATGATCGATTTTTAAACTCTATAGGTCCAGATGAACTGCTTGAAGAACA
CAATCACAGTCTTGAATCACCAACGACTTCATCTGATGTTAAGACACACC
GCAAAAGACGGATTCTCTTTACAAGAGAACAGACGTACGAGTTACAAAAA
GTCTTTCAATATCAACAATATTTGACAGTTCCACAACGTGATTTCTTATC
AAGGAAAATCAACTTGACACCAACACAGGTATGAGTATTCATGATAgaca
ccactggagagtcttctgagaactttttctattttttaagtgacgtatt Coding sequence (CDS) from alignment at scaffold_493:214507..217155+ >TCONS_00069083 ID=TCONS_00069083|Name=TCONS_00069083|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_493:214507..217155+ (Clytia hemisphaerica)
ATGTCCTTTAGTATTGATGCTCTTTTAAAGCCTGATCATAAGGAGAGAAG
AAATTCAGGGAGTGAAACCGTAAGGCATCACTTTCATTATGATTTTGACG
ATTATGGAAGTGTTAGATCGTATCGAGGAGAAGACCAAAGAAGACGGAAT
GTTGTGGAAGACTTTATTAAAAGTGGTCCAGATGAACTGCTTGAAGAACA
CAATCACAGTCTTGAATCACCAACGACTTCATCTGATGTTAAGACACACC
GCAAAAGACGGATTCTCTTTACAAGAGAACAGACGTACGAGTTACAAAAA
GTCTTTCAATATCAACAATATTTGACAGTTCCACAACGTGATTTCTTATC
AAGGAAAATCAACTTGACACCAACACAGGTATGAATGTCCTTTAGTATTG
ATGCTCTTTTAAAGCCTGATCATAAGGAGAGAAGAAATTCAGGGAGTGAA
ACCGTAAGGCATCACTTTCATTATGATTTTGACGATTATGGAAGTGTTAG
ATCGTATCGAGGAGAAGACCAAAGAAGACGGAATGTTGTGGAAGACTTTA
TTAAAAGTGGTCCAGATGAACTGCTTGAAGAACACAATCACAGTCTTGAA
TCACCAACGACTTCATCTGATGTTAAGACACACCGCAAAAGACGGATTCT
CTTTACAAGAGAACAGACGTACGAGTTACAAAAAGTCTTTCAATATCAAC
AATATTTGACAGTTCCACAACGTGATTTCTTATCAAGGAAAATCAACTTG
ACACCAACACAGGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069083-exon-scaffold_493-1491911889:214507..215263 | TCONS_00069083-exon-scaffold_493-1491911889:214507..215263 | Clytia hemisphaerica | exon |
| TCONS_00069083-exon-scaffold_493-1510915933:214507..215263 | TCONS_00069083-exon-scaffold_493-1510915933:214507..215263 | Clytia hemisphaerica | exon |
| TCONS_00069083-exon-scaffold_493-1575043694:214507..215263 | TCONS_00069083-exon-scaffold_493-1575043694:214507..215263 | Clytia hemisphaerica | exon |
| TCONS_00069083-exon-scaffold_493-1491911889:216882..217155 | TCONS_00069083-exon-scaffold_493-1491911889:216882..217155 | Clytia hemisphaerica | exon |
| TCONS_00069083-exon-scaffold_493-1510915933:216882..217155 | TCONS_00069083-exon-scaffold_493-1510915933:216882..217155 | Clytia hemisphaerica | exon |
| TCONS_00069083-exon-scaffold_493-1575043694:216882..217155 | TCONS_00069083-exon-scaffold_493-1575043694:216882..217155 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_493 | supercontig | scaffold_493:214507..217155 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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