TCONS_00069087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069087
Unique NameTCONS_00069087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069087 ID=TCONS_00069087|Name=TCONS_00069087|organism=Clytia hemisphaerica|type=transcript|length=430bp
ATCAAAGCACTCAAACTTATTTTCTCAACAGGCTGCGGCATTTAACATGC
ATCATTGGAAGGAATATTGATCCAAATTTAGTACCTATTTCCAAATCTAT
GAAAAGCTCATTGTTGATGCTTTATTTTACAATCCATGATGCTAGTGACT
TGTCCACAGTGTTTTACAAAAGTGAGATTATTGAGAATACATTGAATCCA
AATTGGAAGGAATTTGACAATGAGACATTTTACAAATCGCCAGCTTATAA
TACATTATCTGAAATAACTGTCATCATTTGGGGTGCTAGAAAACTTGGTC
AATTTCGTGCCATCTCGAGGAGTGATATTAACTTTTCTGGACTGGTATTC
TTGCAAGAAAATCTGAGGAAACATGAAGGCCAGTATGAAAGTAATTGTtt
actttttcaaatgtttggaGGATATTATGC
Run BLAST on NCBI

transcript from alignment at scaffold_493:259549..261139+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069087 ID=TCONS_00069087|Name=TCONS_00069087|organism=Clytia hemisphaerica|type=transcript|length=1591bp|location=Sequence derived from alignment at scaffold_493:259549..261139+ (Clytia hemisphaerica)
ATCAAAGCACTCAAACTTATTTTCTCAACAGGTAGTGTTTATTTGCAAAG
AATGACCTTTGTTAGATAATGAAAACTTTCCTGGGACTAGCTATTTTGAA
CAACAATTATACTTATCTTATTAAGATCATTCAGCATCCTAACCTTTTAT
GGCTGTTTGATGCATATTTAAAAGAAATCTGAAGAAATACTTaccttgtt
ttcattttagcgAAGGCTGCGGCATTTAACATGCATCATTGGAAGGAATA
TTGATCCAAATTTAGTACCTATTTCCAAATCTATGAAAAGCTCATTGTTG
ATGCTTTATTTTACAATCCATGATGCTAGTGACTTGTCCACAGgttattt
caaatttctttaactTGATTCTATCAAACTGGTGTTTTATGACTCCTTTC
AGCCATGTTAACAAATTATGTTCATTGATTGAACTTTATAATTAAGGTAG
CTTGACAAAATAACTTGATTACTTAAAATTTACTTCACTTCTCCCCAAAA
GAAATTAATCAGGGACTAGGTACAACTGTTATAAAGCatgaatttttgat
tatttaatCTCATTTAGTGAAAATGCATAACGTTATATTATTTTCTGact
gatatttttcatttttctccttattgctatctaactttcatcatcaggta
ggtccgtTCAGCATCTaacttttccttttcattttagTGTTTTACAAAAG
TGAGATTATTGAGAATACATTGGTGCGTATgaattttcatgtattttttt
atattctCGAATTTAGCTTATCATGATGATTGACATTGCCTAAATGTTTG
ATGGTGCATTTATGATTTTGTTTCATATTACCTTTTAGAATCCAAATTGG
AAGGAATTTGACAATGAGACATTTTACAAATCGCCAGCTTATAATACATT
ATGTATCTTTTCTATATTAACAATATAGTATCAATTTTCCTGAGTAAACA
TTTTTGCTTTTCACGAATGTACCTGAATGTGTGTGAATCCAAATATGTGC
AAGCTATTTAGATTTCAAGTTTGACTTGAGTCCTAAATACTCTTCCATTT
CTTCTGGAACAGACCAaaacattttagttttttgctaGCTACTCTAATAA
AGTTTTCCTTAACATGACTTAATAAATAGCTGAAATAACTGTCATCATTT
GGGGTGCTAGAAAACTTGGTCAATTTCGTGCCATCTCGAGGAGTGATATT
AACTTTTCTGGACTGGTATTCTTGCAAGAAAATGTAAGACTTATTTGAAT
TGATTTCtctgaaaatttgctgatggCAGAAAGTGGTTTGCAACATATTG
AATACAAGATAAATCCACATTGGGTGTTTTAAAAAAGAGCTTGgataaaa
caagaaaaatactGATTTTGCTTTAAACGCCAGGGCACAGGTGTGAACAG
AGTAATAATAGTGCATTACATTGCAATAGTTATAATAAACTATTGTACAC
CAACTACCTACTTTAATGAAAGCTTTTCTTTATATCTTATTGAAAATATT
GTTATCTTTTTTACTTCTTAAAGCTGAGGAAACATGAAGGCCAGTATGAA
AGTAATTGTttactttttcaaatgtttggaGGATATTATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043052XLOC_043052Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069087-exon-scaffold_493-1491911889:259549..259579TCONS_00069087-exon-scaffold_493-1491911889:259549..259579Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1510915933:259549..259579TCONS_00069087-exon-scaffold_493-1510915933:259549..259579Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1575043694:259549..259579TCONS_00069087-exon-scaffold_493-1575043694:259549..259579Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1491911889:259764..259891TCONS_00069087-exon-scaffold_493-1491911889:259764..259891Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1510915933:259764..259891TCONS_00069087-exon-scaffold_493-1510915933:259764..259891Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1575043694:259764..259891TCONS_00069087-exon-scaffold_493-1575043694:259764..259891Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1491911889:260236..260270TCONS_00069087-exon-scaffold_493-1491911889:260236..260270Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1510915933:260236..260270TCONS_00069087-exon-scaffold_493-1510915933:260236..260270Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1575043694:260236..260270TCONS_00069087-exon-scaffold_493-1575043694:260236..260270Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1491911889:260387..260450TCONS_00069087-exon-scaffold_493-1491911889:260387..260450Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1510915933:260387..260450TCONS_00069087-exon-scaffold_493-1510915933:260387..260450Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1575043694:260387..260450TCONS_00069087-exon-scaffold_493-1575043694:260387..260450Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1491911889:260678..260781TCONS_00069087-exon-scaffold_493-1491911889:260678..260781Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1510915933:260678..260781TCONS_00069087-exon-scaffold_493-1510915933:260678..260781Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1575043694:260678..260781TCONS_00069087-exon-scaffold_493-1575043694:260678..260781Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1491911889:261072..261139TCONS_00069087-exon-scaffold_493-1491911889:261072..261139Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1510915933:261072..261139TCONS_00069087-exon-scaffold_493-1510915933:261072..261139Clytia hemisphaericaexon
TCONS_00069087-exon-scaffold_493-1575043694:261072..261139TCONS_00069087-exon-scaffold_493-1575043694:261072..261139Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_493supercontigscaffold_493:259549..261139 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.64817	3.11817	3.09073	1.44249	0	0	0	0	0.241599	0	0	0	0	0	0	0	0	0	0	0	0	2.06368	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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