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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069113 ID=TCONS_00069113|Name=TCONS_00069113|organism=Clytia hemisphaerica|type=transcript|length=1080bp
TATAAATAAGATTTCATAGCACATTTTGGTGAATTCAGTAAATCTGGCGA
ATGGCGGTTAAAAGCAATTAAATACACAATATTAAACTTTCCAAGTTAAG
TAATATAACTAAGATACAAAGTGTAGCTTCATAAAACTTGGTGGTAAACA
ACTCTGGCAAATAATAATTGAGAAGTAATTACCAATACTGAGCTGAGAAG
CACCATTGGCTGAATACTGTAATGGGGCTACTGATAAGCGTTGGTAAAGA
TACCAAACAGATTCTGGAGGACACCAAACAACTAATGACATTGTCATTCA
AGATTCTTATCAGTTTGGTGACCATTGTTCAAGATGTCGAGGATATTGTA
TTGGAAATCAAGGATCTGACAAATATGGTACATTTCTCTATCAATGCTGT
GGACAAGAATAAAGTTGATGATAAAATTGACCAATTGAAGACTTATGCTG
GTGATTTGAGCcagaaagtgaaagaaaaacacGAGAGATTGAACATGCTG
AGTATGCTATTGGAGGATGTAATGAAGTTAAGATATGGCAAAGATTGGAG
AGATTCTTATGGTGAAATGAAAACTAACACTAGCGAATCTAGCGATACTG
AAAATTTGGCGAGAAAAAAAGAGGACTGACTTTATAAAATTGAGCATGTT
TTGGAGCGTGAAATGAGGCTGAGATACGATTTAGAATGGAAAGAATTCTG
ATGCTGAATTGAAAGCAAATACTAGCGTTTTAAGCTATGATAATGCAAAT
TTGGTATCGAAAACAGAGAATTGGATTCCCTTTCGAATTCCAGACCGACT
AACAATCGGAGGGTTTGAAATATGTAAGCTTTTGACAGCCACAGAGCGAA
CGAAAAAACACCTATGCCTAATCATTGTCATTGGTATCGAGGCTAACTGC
AAACTTAACGTATGTAACATATGGACAATCCTTTCGTGAGAGATTCGATA
AACTATAATAAAGCTTTTACACACGACTGACAAATGTTAACATACTTGAA
AAGTTGAGACTTCCCTTAGAATATCAAACATATAGATAGAATACTACACT
ATATTGTAGCGTGAAACATGAGACACTAGC Run BLAST on NCBI protein sequence of TCONS_00069113-protein >TCONS_00069113-protein ID=TCONS_00069113-protein|Name=TCONS_00069113-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MGLLISVGKDTKQILEDTKQLMTLSFKILISLVTIVQDVEDIVLEIKDLT
NMVHFSINAVDKNKVDDKIDQLKTYAGDLSQKVKEKHERLNMLSMLLEDV
MKLRYGKDWRDSYGEMKTNTSESSDTENLARKKED Run BLAST on NCBI transcript from alignment at scaffold_493:84470..85549 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069113 ID=TCONS_00069113|Name=TCONS_00069113|organism=Clytia hemisphaerica|type=transcript|length=1080bp|location=Sequence derived from alignment at scaffold_493:84470..85549 (Clytia hemisphaerica)
GCTAGTGTCTCATGTTTCACGCTACAATATAGTGTAGTATTCTATCTATA
TGTTTGATATTCTAAGGGAAGTCTCAACTTTTCAAGTATGTTAACATTTG
TCAGTCGTGTGTAAAAGCTTTATTATAGTTTATCGAATCTCTCACGAAAG
GATTGTCCATATGTTACATACGTTAAGTTTGCAGTTAGCCTCGATACCAA
TGACAATGATTAGGCATAGGTGTTTTTTCGTTCGCTCTGTGGCTGTCAAA
AGCTTACATATTTCAAACCCTCCGATTGTTAGTCGGTCTGGAATTCGAAA
GGGAATCCAATTCTCTGTTTTCGATACCAAATTTGCATTATCATAGCTTA
AAACGCTAGTATTTGCTTTCAATTCAGCATCAGAATTCTTTCCATTCTAA
ATCGTATCTCAGCCTCATTTCACGCTCCAAAACATGCTCAATTTTATAAA
GTCAGTCCTCTTTTTTTCTCGCCAAATTTTCAGTATCGCTAGATTCGCTA
GTGTTAGTTTTCATTTCACCATAAGAATCTCTCCAATCTTTGCCATATCT
TAACTTCATTACATCCTCCAATAGCATACTCAGCATGTTCAATCTCTCgt
gtttttctttcactttctgGCTCAAATCACCAGCATAAGTCTTCAATTGG
TCAATTTTATCATCAACTTTATTCTTGTCCACAGCATTGATAGAGAAATG
TACCATATTTGTCAGATCCTTGATTTCCAATACAATATCCTCGACATCTT
GAACAATGGTCACCAAACTGATAAGAATCTTGAATGACAATGTCATTAGT
TGTTTGGTGTCCTCCAGAATCTGTTTGGTATCTTTACCAACGCTTATCAG
TAGCCCCATTACAGTATTCAGCCAATGGTGCTTCTCAGCTCAGTATTGGT
AATTACTTCTCAATTATTATTTGCCAGAGTTGTTTACCACCAAGTTTTAT
GAAGCTACACTTTGTATCTTAGTTATATTACTTAACTTGGAAAGTTTAAT
ATTGTGTATTTAATTGCTTTTAACCGCCATTCGCCAGATTTACTGAATTC
ACCAAAATGTGCTATGAAATCTTATTTATA Coding sequence (CDS) from alignment at scaffold_493:84470..85549 >TCONS_00069113 ID=TCONS_00069113|Name=TCONS_00069113|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_493:84470..85549 (Clytia hemisphaerica)
TCAGTCCTCTTTTTTTCTCGCCAAATTTTCAGTATCGCTAGATTCGCTAG
TGTTAGTTTTCATTTCACCATAAGAATCTCTCCAATCTTTGCCATATCTT
AACTTCATTACATCCTCCAATAGCATACTCAGCATGTTCAATCTCTCgtg
tttttctttcactttctgGCTCAAATCACCAGCATAAGTCTTCAATTGGT
CAATTTTATCATCAACTTTATTCTTGTCCACAGCATTGATAGAGAAATGT
ACCATATTTGTCAGATCCTTGATTTCCAATACAATATCCTCGACATCTTG
AACAATGGTCACCAAACTGATAAGAATCTTGAATGACAATGTCATTAGTT
GTTTGGTGTCCTCCAGAATCTGTTTGGTATCTTTACCAACGCTTATCAGT
AGCCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069113-exon-scaffold_493-1491911889:84470..85549 | TCONS_00069113-exon-scaffold_493-1491911889:84470..85549 | Clytia hemisphaerica | exon |
| TCONS_00069113-exon-scaffold_493-1510915933:84470..85549 | TCONS_00069113-exon-scaffold_493-1510915933:84470..85549 | Clytia hemisphaerica | exon |
| TCONS_00069113-exon-scaffold_493-1575043694:84470..85549 | TCONS_00069113-exon-scaffold_493-1575043694:84470..85549 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_493 | supercontig | scaffold_493:84470..85549 . |
Blast
The following BLAST results are available for this feature:
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