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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069138 ID=TCONS_00069138|Name=TCONS_00069138|organism=Clytia hemisphaerica|type=transcript|length=662bp
attacGCGCTTGGCACGGACAAAATAGAAGCGTTGTTAGAAAGAAAGATG
GCGGATGAGATTGAACTAGAAACAGAGTATTTGGGTcttgaagaaattga
ttttgatgaagatatACCAATTATAGGCAATATCCTACCATTAGATGATT
TTGATTCGAATGTTATTGTGGATGAAAATAAACTTTATGAACATGGTGAT
CACGAAGAAGATGAAAAGATAGACTTTAAAATTCCCACTATAGTATCTGT
GGACGAAGAGGGTATTGAACATGTGAAGGAAGAAAGTTTTGATAATAAGG
TTAATAATTCAAGAAAGATACCCAAAAAGAAGTATTCTCAAAGAAATCGA
AAGCCTAAATCAAGTGATTCAACCATACCGCAAACAACATATTCCACCAC
TACCACTGCCACCACCACCGCCAGTacagcaacaacaaaaaaagcaGCAC
Agccaaaagaaaaaacaacaacacagctaaaagcaacaacaacaacaaca
gtagAAAAGACTTTAATCTGTCGAGTCTGTTCCAAGATGTATAAGCGTTC
ATACCCTTTCTACAAACACCAAGCAATATGTGTTACAAAACAATGGGAGG
CAGATGAAAGTGTTGTAGATGAAAATGCAAAATACAGTGTCATCAAAGAC
AAAGAGGGTATG Run BLAST on NCBI protein sequence of TCONS_00069138-protein >TCONS_00069138-protein ID=TCONS_00069138-protein|Name=TCONS_00069138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
YALGTDKIEALLERKMADEIELETEYLGLEEIDFDEDIPIIGNILPLDDF
DSNVIVDENKLYEHGDHEEDEKIDFKIPTIVSVDEEGIEHVKEESFDNKV
NNSRKIPKKKYSQRNRKPKSSDSTIPQTTYSTTTTATTTASTATTKKAAQ
PKEKTTTQLKATTTTTVEKTLICRVCSKMYKRSYPFYKHQAICVTKQWEA
DESVVDENAKYSVIKDKEGM Run BLAST on NCBI transcript from alignment at scaffold_494:42074..42951- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069138 ID=TCONS_00069138|Name=TCONS_00069138|organism=Clytia hemisphaerica|type=transcript|length=878bp|location=Sequence derived from alignment at scaffold_494:42074..42951- (Clytia hemisphaerica)
ATTACGCGCTTGGCACGGACAAAATAGAAGCGTTGTTAGAAAGAAAGATG
GCGGATGAGATTGAACTAGAAACAGAGTATTTGGGTCTTGAAGAAATTGA
TTTTGATGAAGATATACCAATTATAGGCAATATCCTACCATTAGATGATT
TTGATTCGAATGTTATTGTGGATGAAAATAAACTTTATGAACATGGTGAT
CACGAAGAAGATGAAAAGATAGACTTTAAAATTCCCACTATAGTATCTGT
GGACGAAGAGGGTATTGAACATGTGAAGGAAGAAAGTTTTGATAATAAGG
TTAATAATTCAAGAAAGATACCCAAAAAGAAGTATTCTCAAAGAAATCGA
AAGCCTAAATCAAGTGATTCAACCATACCGCAAACAACATATTCCACCAC
TACCACTGCCACCACCACCGCCAGTACAGCAACAACAAAAAAAGCAGCAC
AGCCAAAAGAAAAAACAACAACACAGCTAAAAGCAACAACAACAACAACA
GTAGAAAAGACTTTAATCTGTCGAGTCTGTTCCAAGATGTATAAGCGTTC
ATACCCTTTCTACAAACACCAAGCAATATGTACGTAGAATCTTGTGTTTT
TAAATGAATTTGAATTTGCTTTTTACTAAACAAGCATGTACAACTGCCTA
ATATGCCTAATATACATTATATACATATTTAGCTCAGGTTTCTCAGGCCT
CTCAAATTTTAAAACTTGCTTCTAGCCTTCAAATTTTGGTTTTGGTTTTT
CTTCTCAAAACTTGTTGTATGATCTATATATTTCATTTGATTCAGGTGTT
ACAAAACAATGGGAGGCAGATGAAAGTGTTGTAGATGAAAATGCAAAATA
CAGTGTCATCAAAGACAAAGAGGGTATG Coding sequence (CDS) from alignment at scaffold_494:42074..42951- >TCONS_00069138 ID=TCONS_00069138|Name=TCONS_00069138|organism=Clytia hemisphaerica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_494:42074..42951- (Clytia hemisphaerica)
GTGTTACAAAACAATGGGAGGCAGATGAAAGTGTTGTAGATGAAAATGCA
AAATACAGTGTCATCAAAGACAAAGAGGGTATGTACGCGCTTGGCACGGA
CAAAATAGAAGCGTTGTTAGAAAGAAAGATGGCGGATGAGATTGAACTAG
AAACAGAGTATTTGGGTCTTGAAGAAATTGATTTTGATGAAGATATACCA
ATTATAGGCAATATCCTACCATTAGATGATTTTGATTCGAATGTTATTGT
GGATGAAAATAAACTTTATGAACATGGTGATCACGAAGAAGATGAAAAGA
TAGACTTTAAAATTCCCACTATAGTATCTGTGGACGAAGAGGGTATTGAA
CATGTGAAGGAAGAAAGTTTTGATAATAAGGTTAATAATTCAAGAAAGAT
ACCCAAAAAGAAGTATTCTCAAAGAAATCGAAAGCCTAAATCAAGTGATT
CAACCATACCGCAAACAACATATTCCACCACTACCACTGCCACCACCACC
GCCAGTACAGCAACAACAAAAAAAGCAGCACAGCCAAAAGAAAAAACAAC
AACACAGCTAAAAGCAACAACAACAACAACAGTAGAAAAGACTTTAATCT
GTCGAGTCTGTTCCAAGATGTATAAGCGTTCATACCCTTTCTACAAACAC
CAAGCAATATGTGTTACAAAACAATGGGAGGCAGATGAAAGTGTTGTAGA
TGAAAATGCAAAATACAGTGTCATCAAAGACAAAGAGGGTATGTACGCGC
TTGGCACGGACAAAATAGAAGCGTTGTTAGAAAGAAAGATGGCGGATGAG
ATTGAACTAGAAACAGAGTATTTGGGTCTTGAAGAAATTGATTTTGATGA
AGATATACCAATTATAGGCAATATCCTACCATTAGATGATTTTGATTCGA
ATGTTATTGTGGATGAAAATAAACTTTATGAACATGGTGATCACGAAGAA
GATGAAAAGATAGACTTTAAAATTCCCACTATAGTATCTGTGGACGAAGA
GGGTATTGAACATGTGAAGGAAGAAAGTTTTGATAATAAGGTTAATAATT
CAAGAAAGATACCCAAAAAGAAGTATTCTCAAAGAAATCGAAAGCCTAAA
TCAAGTGATTCAACCATACCGCAAACAACATATTCCACCACTACCACTGC
CACCACCACCGCCAGTACAGCAACAACAAAAAAAGCAGCACAGCCAAAAG
AAAAAACAACAACACAGCTAAAAGCAACAACAACAACAACAGTAGAAAAG
ACTTTAATCTGTCGAGTCTGTTCCAAGATGTATAAGCGTTCATACCCTTT
CTACAAACACCAAGCAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069138-exon-scaffold_494-1575043694:42373..42951 | TCONS_00069138-exon-scaffold_494-1575043694:42373..42951 | Clytia hemisphaerica | exon |
| TCONS_00069138-exon-scaffold_494-1575043694:42074..42156 | TCONS_00069138-exon-scaffold_494-1575043694:42074..42156 | Clytia hemisphaerica | exon |
| TCONS_00069138-exon-scaffold_494-1510915933:42373..42951 | TCONS_00069138-exon-scaffold_494-1510915933:42373..42951 | Clytia hemisphaerica | exon |
| TCONS_00069138-exon-scaffold_494-1510915933:42074..42156 | TCONS_00069138-exon-scaffold_494-1510915933:42074..42156 | Clytia hemisphaerica | exon |
| TCONS_00069138-exon-scaffold_494-1491911889:42373..42951 | TCONS_00069138-exon-scaffold_494-1491911889:42373..42951 | Clytia hemisphaerica | exon |
| TCONS_00069138-exon-scaffold_494-1491911889:42074..42156 | TCONS_00069138-exon-scaffold_494-1491911889:42074..42156 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_494 | supercontig | scaffold_494:42074..42951 - |
Blast
The following BLAST results are available for this feature:
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