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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069139 ID=TCONS_00069139|Name=TCONS_00069139|organism=Clytia hemisphaerica|type=transcript|length=1739bp
TTTTGTCTTTACTTTCGAAAATTACGGTACGTCCCGATAGTCTCGACAAC
CAACGAATAACAAAATGGATGTCAAATTTTATGGAAAGTATACAAATGAA
GCTAGTAGAAATCTACCTATATCATCGAAATCTCGAAGTATTCTATCGTT
CAATTCGGAGAGCAAAATAAGTAATAAATTTTAACTTGTCTCAACTTACA
AATTTTCCAAGATATGTCAAGATATAACAAGAAGCAGCCGTTTCAATTTC
AACAGGATGACAAGCAATATTTGGGGGAATATTCAGACCGGTCAGTACTT
CCCTTACAAGAAAATACAGACATTTATCCAAACAGAGAGATCGACAGTGG
CAAATGCTCTTACAAAAAGCGTCATAGATTATCACCATACAATAGTTTGA
GTGCGTATAAGGAAAATCTGCCGAGGACACCTATGAAACGCAAGAAGGAT
GTTCAACCTGAAACAATCAACATgtgagtttttatttttgagaattattt
atataatttaaAGGGTTCTAATGCTCTCATCCTGTCTGgcttaatttttc
tgttttattcCTATCCTTATGGATTTTTAATTATAATATCACCATTGTAG
TTACACCAACAGTCGACACTACAAAACAGTGTATTGTTAATTCCATTGGG
CGATAGGtggttaggcggcgggcgttctctaattctccaatcggcatccg
gtcattttgaaaacGGCTGTTTTTATACCAAtattttagtgatttcagga
ggggcagcgtccgataaccggaagaagggcatgaaaaatggcctggtTCC
TTGTCTGCCGTGGAGCACCCTGGAGATACCGAGTCTGAATATCCCCctaa
atacaccgtttaacagtgtcgactgcgcacacgcatgaacaattttccat
tttttttattttggcagccacgggaaacttcactctcccccgtacaaaat
ggtaggtaaacatccagttctcataatAAAAGCCAGCatagaaatggtag
gtaaagaactccttttaatcataacgcgagactgttaaacggtgtattgg
gGGAGTATTCCGAGTATTCAATTAAGTTCGATAGAACATAAAGTTTAACA
AAGTTTGACAAGAATGAAAAGTTCCACAATTTCAATAATAAACTCCGTtc
aacaaattcaacaaaaattttgtttatgttcattactttttcattaaatt
tgacaAAGTTATGTATATAATCAAAGTTTTGAGCCATTAAAgctcttctt
tttttaaagtttgattaagttctacttctttaatgaaattttagattttg
aagaatttgtgaGTACTTGATTGGGCCATTCCAAAAAATTTCTGTCACCC
CCGTCGGTACAATTTCCATGTGATTTCACAAAATGTggcggaaattccac
tcttttatcatttttagttcagttgccttggaaattttgaattttggtga
aaacgtTTGCCCTCGGAAAATTCCTTGTCGTTCCCACCTCCTGCTACTAt
ggacaaattctggaatggcccattaaaATTCAACAACAGGCAGAGTTAAT
CGAATAGTCCCAATATTAGCTCCCTTTGAAAGGTGAATCAAACAGTTTga
ttaaccctttccgtgccgatgtcgtatatatccgacatgcaaattttcac
TCTACTTGCCAATGTCGTACATATCCGACATTAAGTTTTTTTAACCTATT
TGCCGAGGCCTTTAAAAAAAAGGCAGCTCTATTGCCGAG Run BLAST on NCBI transcript from alignment at scaffold_494:44665..46403- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069139 ID=TCONS_00069139|Name=TCONS_00069139|organism=Clytia hemisphaerica|type=transcript|length=1739bp|location=Sequence derived from alignment at scaffold_494:44665..46403- (Clytia hemisphaerica)
TTTTGTCTTTACTTTCGAAAATTACGGTACGTCCCGATAGTCTCGACAAC
CAACGAATAACAAAATGGATGTCAAATTTTATGGAAAGTATACAAATGAA
GCTAGTAGAAATCTACCTATATCATCGAAATCTCGAAGTATTCTATCGTT
CAATTCGGAGAGCAAAATAAGTAATAAATTTTAACTTGTCTCAACTTACA
AATTTTCCAAGATATGTCAAGATATAACAAGAAGCAGCCGTTTCAATTTC
AACAGGATGACAAGCAATATTTGGGGGAATATTCAGACCGGTCAGTACTT
CCCTTACAAGAAAATACAGACATTTATCCAAACAGAGAGATCGACAGTGG
CAAATGCTCTTACAAAAAGCGTCATAGATTATCACCATACAATAGTTTGA
GTGCGTATAAGGAAAATCTGCCGAGGACACCTATGAAACGCAAGAAGGAT
GTTCAACCTGAAACAATCAACATGTGAGTTTTTATTTTTGAGAATTATTT
ATATAATTTAAAGGGTTCTAATGCTCTCATCCTGTCTGGCTTAATTTTTC
TGTTTTATTCCTATCCTTATGGATTTTTAATTATAATATCACCATTGTAG
TTACACCAACAGTCGACACTACAAAACAGTGTATTGTTAATTCCATTGGG
CGATAGGTGGTTAGGCGGCGGGCGTTCTCTAATTCTCCAATCGGCATCCG
GTCATTTTGAAAACGGCTGTTTTTATACCAATATTTTAGTGATTTCAGGA
GGGGCAGCGTCCGATAACCGGAAGAAGGGCATGAAAAATGGCCTGGTTCC
TTGTCTGCCGTGGAGCACCCTGGAGATACCGAGTCTGAATATCCCCCTAA
ATACACCGTTTAACAGTGTCGACTGCGCACACGCATGAACAATTTTCCAT
TTTTTTTATTTTGGCAGCCACGGGAAACTTCACTCTCCCCCGTACAAAAT
GGTAGGTAAACATCCAGTTCTCATAATAAAAGCCAGCATAGAAATGGTAG
GTAAAGAACTCCTTTTAATCATAACGCGAGACTGTTAAACGGTGTATTGG
GGGAGTATTCCGAGTATTCAATTAAGTTCGATAGAACATAAAGTTTAACA
AAGTTTGACAAGAATGAAAAGTTCCACAATTTCAATAATAAACTCCGTTC
AACAAATTCAACAAAAATTTTGTTTATGTTCATTACTTTTTCATTAAATT
TGACAAAGTTATGTATATAATCAAAGTTTTGAGCCATTAAAGCTCTTCTT
TTTTTAAAGTTTGATTAAGTTCTACTTCTTTAATGAAATTTTAGATTTTG
AAGAATTTGTGAGTACTTGATTGGGCCATTCCAAAAAATTTCTGTCACCC
CCGTCGGTACAATTTCCATGTGATTTCACAAAATGTGGCGGAAATTCCAC
TCTTTTATCATTTTTAGTTCAGTTGCCTTGGAAATTTTGAATTTTGGTGA
AAACGTTTGCCCTCGGAAAATTCCTTGTCGTTCCCACCTCCTGCTACTAT
GGACAAATTCTGGAATGGCCCATTAAAATTCAACAACAGGCAGAGTTAAT
CGAATAGTCCCAATATTAGCTCCCTTTGAAAGGTGAATCAAACAGTTTGA
TTAACCCTTTCCGTGCCGATGTCGTATATATCCGACATGCAAATTTTCAC
TCTACTTGCCAATGTCGTACATATCCGACATTAAGTTTTTTTAACCTATT
TGCCGAGGCCTTTAAAAAAAAGGCAGCTCTATTGCCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069139-exon-scaffold_494-1575043694:44665..46403 | TCONS_00069139-exon-scaffold_494-1575043694:44665..46403 | Clytia hemisphaerica | exon |
| TCONS_00069139-exon-scaffold_494-1510915933:44665..46403 | TCONS_00069139-exon-scaffold_494-1510915933:44665..46403 | Clytia hemisphaerica | exon |
| TCONS_00069139-exon-scaffold_494-1491911889:44665..46403 | TCONS_00069139-exon-scaffold_494-1491911889:44665..46403 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_494 | supercontig | scaffold_494:44665..46403 - |
Blast
The following BLAST results are available for this feature:
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