|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069140 ID=TCONS_00069140|Name=TCONS_00069140|organism=Clytia hemisphaerica|type=transcript|length=1379bp
GCCTATTCGAGCCACCAAGGTGACCAAGAACCACTACGTAATTAAAAGGA
AAATCCCTTTCAGAAATTAACTTTGAAAATAGTTAAACCAATATGTACCT
ccgaaaacttttaaatattattacgtaaagctagccatcgaaatgaccat
gcctattcGATCGAGCCACCAAGACCAAGAACCACTAGgtaattgaaaaa
gaaaaaaaacttttctgtaattaacttttaaaaattctaaaaccaATATG
TACCTccgaaaactttgaaataataCGTTAGCCATCgaaatgaccatgcc
tattcGAGCCACCAAGGTGACCAAGAACCACGACGTAAttgaacaagaaa
aaaaacctttcaggaattaacttttgaaaattctaaaaccaATATCTACT
TCCAAAAACTTTAAATATTACTTTAAAGCTAGCCATCAAAATGACCACGC
ATGCGCCTATTCGAGCCAAAGATTAGAAGGTGACCAAGAACCACTGCGTA
GTTAAAAGGAAAAAACTTTACACATCAGCAGAGAGAGAGAGAGTACTAAT
TTTTGAAAATTGTAACAGACCTCAAAGACCTTTTTGAAATGTTGTGATAT
TGCCTGTTTGAGTAACTTATGGAACTTTGGAAAAATGTTATATGCTCAGT
TGATTATTTAACTACCCTTATAAACAGATAAAAACGACTGAACCCCTTTT
CCAAAAACTTACTTAAATGCTTGTTTTGACTTCTTGTGTGATTAGCAGAT
TCAGCATTATTCAGTAGAATCAGCAGTACCCAAAACTGAAGAATGTAAAA
GGTTTGTACTTACAGTTTCAAAATCCTGCTGATGCTTGGTCACTACCATC
AAAATGTATTTTGCCGCTtcacaaaattcacaaaattataGCGGGAAAAC
TTGACGCGATTTGATTGGCTAGCTGAATCAGTACCAAACTACTATGAGTT
GGTTGTACGGAAAAAGCAGCAAAGGGTCGCTTGTATACAGGATGTTCCGT
CTGGTCTGTGAAATTGATAGATAGGGTGTTTCCGGGACTTTTCGAAAATA
ATCATCATATGTAGTTTTGATTGCCCCTTTTGCTTGACATCTTTTGCTGA
AGACCTATTAGTTTTAATACACCATTCGAAAGACAATAAAAAATACTGAC
TTTTGACGTCGAGGCAGATGTGCGCACTATTTCGCCCGCGCGTGCAGAGA
GCGTTAAAATAGAAGGTAGCCGTTTTTTGTGTAAACAAACTAATTATTTT
GGAATCTACAGGCAAATTGTACCATCTGCCTAGACGTAAATCGATCAGCC
TTTATATAAGCTTTCAAGATAAACCATAAAACTTATATGTGTCAGGCAGA
GCAATTGACGCAAAAGTTGAAAAACCTTC Run BLAST on NCBI transcript from alignment at scaffold_494:77650..79483- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069140 ID=TCONS_00069140|Name=TCONS_00069140|organism=Clytia hemisphaerica|type=transcript|length=1834bp|location=Sequence derived from alignment at scaffold_494:77650..79483- (Clytia hemisphaerica)
GCCTATTCGAGCCACCAAGGTGACCAAGAACCACTACGTAATTAAAAGGA
AAATCCCTTTCAGAAATTAACTTTGAAAATAGTTAAACCAATATGTACAT
CTGAAAACTTTGAAATACTACGTAAAGCTAGCCATCGAAATGACCATGCC
TATTCGAGCCACCAAGGTGACCAAGAACCACTACGTAATTGAAAAAGAAA
AAATCCCTTTCAGAAATTAACTTTGAAAATAGTTGAACCAATATGACCTC
CGAAAACTTTGAAATACTACGTAAAGCTAGCCATTGAAATGACCATGCCT
ATTCGAGCCACCAAGGTGACCAAGAACCACTACGTAATTAAAAAAAAGAA
AAAAAACTTTTAAGAATTAACTTTTGAAAATTCTAAAACCAATATGTACC
TTTGAAAACTTTGAAATATTACGTAAAGCTAGCCATCGAAATGACCATGC
CTATTCGAGCCACCAAGGTGACCAAGAACCACTACTACGTAATTAAAAAA
GAAAAAAACCCTTTTTGGAATTAACTTTTAAAAATTCTAAAACCAATATG
TACCTCCGAAAACTTTTAAATATTATTACGTAAAGCTAGCCATCGAAATG
ACCATGCCTATTCGATCGAGCCACCAAGACCAAGAACCACTAGGTAATTG
AAAAAGAAAAAAAACTTTTCTGTAATTAACTTTTAAAAATTCTAAAACCA
ATATGTACCTCCGAAAACTTTGAAATAATACGTTAGCCATCGAAATGACC
ATGCCTATTCGAGCCACCAAGGTGACCAAGAACCACGACGTAATTGAACA
AGAAAAAAAACCTTTCAGGAATTAACTTTTGAAAATTCTAAAACCAATAT
CTACTTCCAAAAACTTTAAATATTACTTTAAAGCTAGCCATCAAAATGAC
CACGCATGCGCCTATTCGAGCCAAAGATTAGAAGGTGACCAAGAACCACT
GCGTAGTTAAAAGGAAAAAACTTTACACATCAGCAGAGAGAGAGAGAGTA
CTAATTTTTGAAAATTGTAACAGACCTCAAAGACCTTTTTGAAATGTTGT
GATATTGCCTGTTTGAGTAACTTATGGAACTTTGGAAAAATGTTATATGC
TCAGTTGATTATTTAACTACCCTTATAAACAGATAAAAACGACTGAACCC
CTTTTCCAAAAACTTACTTAAATGCTTGTTTTGACTTCTTGTGTGATTAG
CAGATTCAGCATTATTCAGTAGAATCAGCAGTACCCAAAACTGAAGAATG
TAAAAGGTTTGTACTTACAGTTTCAAAATCCTGCTGATGCTTGGTCACTA
CCATCAAAATGTATTTTGCCGCTTCACAAAATTCACAAAATTATAGCGGG
AAAACTTGACGCGATTTGATTGGCTAGCTGAATCAGTACCAAACTACTAT
GAGTTGGTTGTACGGAAAAAGCAGCAAAGGGTCGCTTGTATACAGGATGT
TCCGTCTGGTCTGTGAAATTGATAGATAGGGTGTTTCCGGGACTTTTCGA
AAATAATCATCATATGTAGTTTTGATTGCCCCTTTTGCTTGACATCTTTT
GCTGAAGACCTATTAGTTTTAATACACCATTCGAAAGACAATAAAAAATA
CTGACTTTTGACGTCGAGGCAGATGTGCGCACTATTTCGCCCGCGCGTGC
AGAGAGCGTTAAAATAGAAGGTAGCCGTTTTTTGTGTAAACAAACTAATT
ATTTTGGAATCTACAGGCAAATTGTACCATCTGCCTAGACGTAAATCGAT
CAGCCTTTATATAAGCTTTCAAGATAAACCATAAAACTTATATGTGTCAG
GCAGAGCAATTGACGCAAAAGTTGAAAAACCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069140-exon-scaffold_494-1575043694:79386..79483 | TCONS_00069140-exon-scaffold_494-1575043694:79386..79483 | Clytia hemisphaerica | exon |
| TCONS_00069140-exon-scaffold_494-1575043694:77650..78930 | TCONS_00069140-exon-scaffold_494-1575043694:77650..78930 | Clytia hemisphaerica | exon |
| TCONS_00069140-exon-scaffold_494-1510915933:79386..79483 | TCONS_00069140-exon-scaffold_494-1510915933:79386..79483 | Clytia hemisphaerica | exon |
| TCONS_00069140-exon-scaffold_494-1510915933:77650..78930 | TCONS_00069140-exon-scaffold_494-1510915933:77650..78930 | Clytia hemisphaerica | exon |
| TCONS_00069140-exon-scaffold_494-1491911889:79386..79483 | TCONS_00069140-exon-scaffold_494-1491911889:79386..79483 | Clytia hemisphaerica | exon |
| TCONS_00069140-exon-scaffold_494-1491911889:77650..78930 | TCONS_00069140-exon-scaffold_494-1491911889:77650..78930 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_494 | supercontig | scaffold_494:77650..79483 - |
Blast
The following BLAST results are available for this feature:
|
