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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069148 ID=TCONS_00069148|Name=TCONS_00069148|organism=Clytia hemisphaerica|type=transcript|length=965bp
CAAGAACGGATAAGTTTTGACCAAGATTTCGCAAGAAATTACAAGATTTT
GCAAGAACAGATAAGTTCTGACCACTGTTTAAAGTAAGATTTAGCAAGAA
ATTGCAAGAACTTGTAAGAACGGATAAGTTGTGACGACTGTTTAAAGTAA
GATTTCGCAAGAAATTGCAAGAACTTGTAAGAATGGATAAGTTTTGGCCA
CTGTTTAAAGTAAGATTTCGCAAGAAATTGCAAGATCTTGCAAGAACGGA
TAAGTTGTGACGACTGTTTAAAGTAAGATTTCGCAAGAAATTGCAAGAAC
GGATAAGTTTTGGCCACTGTTTGAAGTAAGATCTCGCAAAAACGGGTAAA
TTCTGAACACTACTCAAACTTGGGTAAAGTGAAAGGAAAAGAAACATTTC
GTGTTTGGTTTTTAATGGGTATTTACATATTTACATATTTACATAAAAAG
ATAAATGGATAAATCAATGTACATATGTAAAAATTAAGACATATCTATAA
AATCATTTTCTGCGCTcttcttcttatttttctttttttcgttaCGTTTG
TCTCGGCAATGCTGATTAATGGAATCTCTGCACATTTTCAATATGTGTTC
GTTTTTGGGTTTTTCACCTTGCGGATAATGATGGAGGATTAGCCctataa
agtaaaaaaatttataaccTAAATTATACATGTATAATTAAAGAACCTGA
ATAATTTAATAGTCTCTTCGTTTGGGACAGAGCAATAAAGTAGCAGGGCT
TTCgcaaaatgtaaaatttcaaaagaaatttgatcCAAACTACACAGAGC
GAAATAAGTGAACGATTATTACAAAATGAAGTGGATACATACGTTTTAGT
AATTCTAGCCGTTCACCCTCCAACTCAACCAGACCTTTCTCCACCATATT
TGGTCGGTAGCTGTCGGCAGGGTCGATCAGCCCTTTGGTTCTTTCCTCCA
GACTCCAGAGATCCC Run BLAST on NCBI protein sequence of TCONS_00069148-protein >TCONS_00069148-protein ID=TCONS_00069148-protein|Name=TCONS_00069148-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MFLFLSLYPSLSSVQNLPVFARSYFKQWPKLIRSCNFLRNLTLNSRHNLS
VLARSCNFLRNLTLNSGQNLSILTSSCNFLRNLTLNSRHNLSVLTSSCNF
LLNLTLNSGQNLSVLAKSCNFLRNLGQNLSVL Run BLAST on NCBI transcript from alignment at scaffold_494:56320..57284 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069148 ID=TCONS_00069148|Name=TCONS_00069148|organism=Clytia hemisphaerica|type=transcript|length=965bp|location=Sequence derived from alignment at scaffold_494:56320..57284 (Clytia hemisphaerica)
GGGATCTCTGGAGTCTGGAGGAAAGAACCAAAGGGCTGATCGACCCTGCC
GACAGCTACCGACCAAATATGGTGGAGAAAGGTCTGGTTGAGTTGGAGGG
TGAACGGCTAGAATTACTAAAACGTATGTATCCACTTCATTTTGTAATAA
TCGTTCACTTATTTCGCTCTGTGTAGTTTGgatcaaatttcttttgaaat
tttacattttgcGAAAGCCCTGCTACTTTATTGCTCTGTCCCAAACGAAG
AGACTATTAAATTATTCAGGTTCTTTAATTATACATGTATAATTTAggtt
ataaatttttttactttatagGGCTAATCCTCCATCATTATCCGCAAGGT
GAAAAACCCAAAAACGAACACATATTGAAAATGTGCAGAGATTCCATTAA
TCAGCATTGCCGAGACAAACGtaacgaaaaaaagaaaaataagaagaagA
GCGCAGAAAATGATTTTATAGATATGTCTTAATTTTTACATATGTACATT
GATTTATCCATTTATCTTTTTATGTAAATATGTAAATATGTAAATACCCA
TTAAAAACCAAACACGAAATGTTTCTTTTCCTTTCACTTTACCCAAGTTT
GAGTAGTGTTCAGAATTTACCCGTTTTTGCGAGATCTTACTTCAAACAGT
GGCCAAAACTTATCCGTTCTTGCAATTTCTTGCGAAATCTTACTTTAAAC
AGTCGTCACAACTTATCCGTTCTTGCAAGATCTTGCAATTTCTTGCGAAA
TCTTACTTTAAACAGTGGCCAAAACTTATCCATTCTTACAAGTTCTTGCA
ATTTCTTGCGAAATCTTACTTTAAACAGTCGTCACAACTTATCCGTTCTT
ACAAGTTCTTGCAATTTCTTGCTAAATCTTACTTTAAACAGTGGTCAGAA
CTTATCTGTTCTTGCAAAATCTTGTAATTTCTTGCGAAATCTTGGTCAAA
ACTTATCCGTTCTTG Coding sequence (CDS) from alignment at scaffold_494:56320..57284 >TCONS_00069148 ID=TCONS_00069148|Name=TCONS_00069148|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_494:56320..57284 (Clytia hemisphaerica)
ATGTTTCTTTTCCTTTCACTTTACCCAAGTTTGAGTAGTGTTCAGAATTT
ACCCGTTTTTGCGAGATCTTACTTCAAACAGTGGCCAAAACTTATCCGTT
CTTGCAATTTCTTGCGAAATCTTACTTTAAACAGTCGTCACAACTTATCC
GTTCTTGCAAGATCTTGCAATTTCTTGCGAAATCTTACTTTAAACAGTGG
CCAAAACTTATCCATTCTTACAAGTTCTTGCAATTTCTTGCGAAATCTTA
CTTTAAACAGTCGTCACAACTTATCCGTTCTTACAAGTTCTTGCAATTTC
TTGCTAAATCTTACTTTAAACAGTGGTCAGAACTTATCTGTTCTTGCAAA
ATCTTGTAATTTCTTGCGAAATCTTGGTCAAAACTTATCCGTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069148-exon-scaffold_494-1491911889:56320..57284 | TCONS_00069148-exon-scaffold_494-1491911889:56320..57284 | Clytia hemisphaerica | exon |
| TCONS_00069148-exon-scaffold_494-1510915933:56320..57284 | TCONS_00069148-exon-scaffold_494-1510915933:56320..57284 | Clytia hemisphaerica | exon |
| TCONS_00069148-exon-scaffold_494-1575043694:56320..57284 | TCONS_00069148-exon-scaffold_494-1575043694:56320..57284 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_494 | supercontig | scaffold_494:56320..57284 . |
Blast
The following BLAST results are available for this feature:
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