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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069151 ID=TCONS_00069151|Name=TCONS_00069151|organism=Clytia hemisphaerica|type=transcript|length=2228bpRun BLAST on NCBI protein sequence of TCONS_00069151-protein >TCONS_00069151-protein ID=TCONS_00069151-protein|Name=TCONS_00069151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=556bp MATKIIDVNNPSGGSQSATTCPWGKIQNTPPASSFSSLMDEEYAKELESERun BLAST on NCBI transcript from alignment at scaffold_495:21833..30877+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069151 ID=TCONS_00069151|Name=TCONS_00069151|organism=Clytia hemisphaerica|type=transcript|length=9045bp|location=Sequence derived from alignment at scaffold_495:21833..30877+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_495:21833..30877+ >TCONS_00069151 ID=TCONS_00069151|Name=TCONS_00069151|organism=Clytia hemisphaerica|type=CDS|length=16710bp|location=Sequence derived from alignment at scaffold_495:21833..30877+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069151 vs. Swiss-Prot (Human)
Match: RIOK3 (Serine/threonine-protein kinase RIO3 OS=Homo sapiens GN=RIOK3 PE=1 SV=2) HSP 1 Score: 443.351 bits (1139), Expect = 1.059e-146 Identity = 234/486 (48.15%), Postives = 314/486 (64.61%), Query Frame = 3
Query: 159 IIDVNNPSGGSQSA---TTCPWGKIQNTPPASSFSSLMDEEYAXXXXXXXXXXXXXXXDPVQTETQVVIPPEAA-------TNGSDDTANDLLLAQMLQLEFNKENDAYVKSLEKTYNGTSKVSMSFKNFQSVHPYE-ADSSRKLYGKXXXXXXXXXXXXXXXXAINERKADG-EIITKHDQQISERKNAKNVEQFPLHFASGDVGRKDIRLPNAVYNRLKTHSKKEERNHMRIHEKQEHSTHEKALDEKSRLILYKMVNNGTLDSISGIVSTGKEAVVIHARGGQSEN-----GPLPSECALKIFKTTLNEFKTREKYIKDDHRFRDRYSKQNPRKIIKLWAEKEFRNLNRMQEAGIPCPKVVCLRKHILVMTFVGADQKPAPKLKDAILSRRELESAYSQCTEMMKTMYNECKLIHSDLSEYNILWHYNKCFFIDVSQSIEPVHPQAFHFLLRDCHNITSFFTKAGLTTDIVMKEEELFKYVCG 1565
++ V +P G+ +A + CPW QNT + S + +M E+ AKE +Q E + + PE A T + DT++DL+LAQMLQ+E+++E DA ++ EK +NG SKVS+SF+N++ VHPYE +DSS D DD + G +I TKHD+ + RKN +E F F GD D++L N V+N LK H+ EER R+HEK+EHST EKA+D K+RL++YKMVN+G L++I+G +STGKE+VV HA GG E+ +P+ECA+K+FKTTLNEFK R+KYIKDD RF+DR+SK NPRKII++WAEKE NL RMQ AGIPCP VV L+KHILVM+F+G DQ PAPKLK+ L+ E++ AY Q +M+ +Y+EC L+H+DLSEYN+LWH K + IDVSQS+EP HP FL RDC N++ FF K G+ + E ELF V G
Sbjct: 3 LVGVASPEPGTAAAWGPSKCPWAIPQNTI-SCSLADVMSEQLAKE---------------LQLEEEAAVFPEVAVAEGPFITGENIDTSSDLMLAQMLQMEYDREYDAQLRREEKKFNGDSKVSISFENYRKVHPYEDSDSSEDEVDWQDTRDDPYRPAKPVPTPKKGFIGKGKDITTKHDEVVCGRKNTARMENFAPEFQVGDGIGMDLKLSNHVFNALKQHAYSEERRSARLHEKKEHSTAEKAVDPKTRLLMYKMVNSGMLETITGCISTGKESVVFHAYGGSMEDEKEDSKVIPTECAIKVFKTTLNEFKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLARMQRAGIPCPTVVLLKKHILVMSFIGHDQVPAPKLKEVKLNSEEMKEAYYQTLHLMRQLYHECTLVHADLSEYNMLWHAGKVWLIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQKGGVKE--ALSERELFNAVSG 470 The following BLAST results are available for this feature:
BLAST of TCONS_00069151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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