|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069160 ID=TCONS_00069160|Name=TCONS_00069160|organism=Clytia hemisphaerica|type=transcript|length=1631bp
Nagcactgcatactgcaccctggctaggcagatcgaattgcctagcatct
cacgccataaaactaattgtggcgcagactgaaagaagaattggacaaag
ggaaattccctaagGAATTCTGTGAATGACTCCTCTGGAGTCAAGCTTTG
AAGAGAACCAAGAGGGAGGAAAGCCTCAACACTGCATGGCCTCAAAAAAg
aatatatatagtgaagatatgtaatatctgtcattttagaaaaagaaaag
tattgatatataaataactgaaactgctaaaaacgaaaaaaagttaagaa
tatttttgttaattgtgtatatttacgatttttttggtattttttatttt
ttaatcatttcgaaacagagggtaatttagcaaaaagttaaagggaattt
aaatagtggtatgtgaaagaaaaacctaatctaaatgaagatagaagaaa
agtaatagtggagaaacaatgcattgcaaaaaacttttttgataaacaca
cttccgtaCAATCATTTACACgagttcatcaaaatacatacaaaatgggg
acaaatacaaaagcaaacacgtcaaataaatttaaaaaaaagaaggtaTA
TACACAAGacaaaacccgaagtcccagacttgtgactggcatagtgactt
tccacgtgtttaagggcccacactcagtcgccttcggaaaacatagtaga
aaaaggaactgaccagcagcttccaaatAAATAACAGACAACAAACACAC
ACTACAACAAAATAAAGTACAAAAGGGCAGAAAGACACACTGTACCAACT
ATCCCACGTACACTACAGGTGAAACAAACATTTGTAACAAACACAAtctt
acataaaaatagaaaaaatcacacaaaaactgaaaagaatagAATCGTTG
GTTGGCcgagaacccggttcggcgtgccgcgacGGGAGGACTGCACAGGG
CAAAGAAAAGTTGTTGAGGAAAGCTTGGGAAGATCTTTTTCAAATGACGA
GCAATTATTGCCAACTAATCAACAGaGTATGGGGTGCATCTCACCACTAT
CACGCAACTCCTTAAAGGCAAAGTCATACTTCCTGACACCCAAGCTAAAA
GCAACTACATCCACACCCAAGACAACACCCTCCTCCATCAACAAATCTAA
CAAAACAGCATCATTAATATCATCCCCAGTAAACAAGCCCGTCCAAACAT
CATCGTCAGTCGTCAGCAAGTCCATCCAAACGTCATCCTCAGTCAGCAAG
CCAATCAAAAAGTTATCCTCAGTCAGCAAGCCAATCGAAAAGTCACCATC
CACTTTAAGCAAGCCCATCCAAATAGCCACATCAGATCATAATTCAATAC
CAATAACTTCAAATAATCCATCTAATGAAACATCAGCCGGGTTAAAACAG
CTGGGTGATTGCACACCGCACATTTTTTTAACGGACATGGAGATGACAAG
GATTAGGGCGAAAACAAACAACATGGCATCTTGGCGCAAATTTGTGAATT
TAATCCTGGGTTTAAAATTTACAAAGGATGAACTTAAAAAAAGTTCAGCT
TTAGGATTAGCAGATAAAAAGACCGGACGAGTAGGACCTGCGTTAAATCC
ATTCATCATTAATGAATTATCAACATATACA Run BLAST on NCBI protein sequence of TCONS_00069160-protein >TCONS_00069160-protein ID=TCONS_00069160-protein|Name=TCONS_00069160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MGCISPLSRNSLKAKSYFLTPKLKATTSTPKTTPSSINKSNKTASLISSP
VNKPVQTSSSVVSKSIQTSSSVSKPIKKLSSVSKPIEKSPSTLSKPIQIA
TSDHNSIPITSNNPSNETSAGLKQLGDCTPHIFLTDMEMTRIRAKTNNMA
SWRKFVNLILGLKFTKDELKKSSALGLADKKTGRVGPALNPFIINELSTY
T Run BLAST on NCBI transcript from alignment at scaffold_495:238714..243428+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069160 ID=TCONS_00069160|Name=TCONS_00069160|organism=Clytia hemisphaerica|type=transcript|length=4715bp|location=Sequence derived from alignment at scaffold_495:238714..243428+ (Clytia hemisphaerica)
Nagcactgcatactgcaccctggctaggcagatcgaattgcctagcatct
cacgccataaaactaattgtggcgcagactgaaagaagaattggacaaag
ggaaattccctaagGAATTCTGTGAATGACTCCTCTGGAGTCAAGCTTTG
AAGAGAACCAAGAGGGAGGAAAGCCTCAACACTGCATGGCCTCAAAAAAg
aatatatatagtgaagatatgtaatatctgtcattttagaaaaagaaaag
tattgatatataaataactgaaactgctaaaaacgaaaaaaagttaagaa
tatttttgttaattgtgtatatttacgatttttttggtattttttatttt
ttaatcatttcgaaacagagggtaatttagcaaaaagttaaagggaattt
aaatagtggtatgtgaaagaaaaacctaatctaaatgaagatagaagaaa
agtaatagtggagaaacaatgcattgcaaaaaacttttttgataaacaca
cttccgtaCAATCATTTACACgagttcatcaaaatacatacaaaatgggg
acaaatacaaaagcaaacacgtcaaataaatttaaaaaaaagaaggtaTA
TACACAAGacaaaacccgaagtcccagacttgtgactggcatagtgactt
tccacgtgtttaagggcccacactcagtcgccttcggaaaacatagtaga
aaaaggaactgaccagcagcttccaaatAAATAACAGACAACAAACACAC
ACTACAACAAAATAAAGTACAAAAGGGCAGAAAGACACACTGTACCAACT
ATCCCACGTACACTACAGGTGAAACAAACATTTGTAACAAACACAAtctt
acataaaaatagaaaaaatcacacaaaaactgaaaagaatagAATCGTTG
GTTGGCcgagaacccggttcggcgtgccgcgacGGGAGGACTGCACAGGG
CAAAGAAAAGTAGGaaagtatatatatagtgaagatatgtaatatctgtc
attttagaaaaagaaaagtattgatatataaataactcaaactgataaaa
acgaaaaaagttaagaatatttttgttaattgtgtgtCTAATTATATAGA
AAAGGAAAATCAGGTTGTGAAATTTCCATTGATCACTTTAAGAATGTGTG
TCCCGGTGCTACTTTTACCATCcagattcttgaacttttgcccGGTGATG
GTTATTTAAATGGGAAAATTGATCCTGCAATGTTAAGACTTCGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAAAATGTTCGTTTTTCTAAACGTTTTGGTC
TTGCTGTTTCTGAGAAGGACTTGGATCTTCCATGTATCTATTGGACTCCA
AAGAAACACAAGACTCCTACTGGATTACTTTATCCTGTTTCAAACTTTAT
TTTCAGTAGTTTGAGTCAATTCATCGTAAAGCCTAACAACATTCCTAATA
GCAAATCTCATATTACATTAGGTTGTTGAGGAAAGCTTGGGAAGATCTTT
TTCAAATGACGAGCAATTATTGCCAACTAATCAACAGGTAAAAATGATGC
ACCTTAATTTCATAACGCTAACAATTTAATTAAGACGAAACTTGAATCAT
AATTCAAATTGTGATTTTTCTTACACATGATCCTCAAATATTCGCATTAA
GTATGTTCCCTCACAAAGTTTTTATTTGGTATTGAaaattatgtttcttt
tctgtactataaaatatgtttttttagaGTATGGGGTGCATCTCACCACT
ATCACGCAACTCCTTAAAGGCAAAGTCATACTTCCTGACACCCAAGCTAA
AAGCAACTACATCCACACCCAAGACAACACCCTCCTCCATCAACAAATCT
AACAAAACAGCATCATTAATATCATCCCCAGTAAACAAGCCCGTCCAAAC
ATCATCGTCAGTCGTCAGCAAGTCCATCCAAACGTCATCCTCAGTCAGCA
AGCCAATCAAAAAGTTATCCTCAGTCAGCAAGCCAATCGAAAAGTCACCA
TCCACTTTAAGCAAGCCCATCCAAATAGCCACATCAGATCATAATTCAAT
ACCAATAACTTCAAATAATCCATCTAATGAAACATCAGCCGGGGTGAGAA
ACTTTCGCTACTTTGAAATGCTTATCTCAAATGTCACCCTCATTTCAAAT
CTTTTAGATCTCAACCGTCTAACCCTAGATTTTAAGAAATACATTTATTA
TGATTTTGTCCGACAACCATTATTTCTTTGAGGGCACTTCCCATAAAACA
CTAATTTAACTTGTTTTCACACCTTTCAGACCAGCACCCCTGTAAGATAT
AAATTGCTATCTGAAACTTgatacaaaacataaaaatcaaatgattcaaa
attttctccatttAGTTAAAACAGCTGGGTGATTGCACACCGCACATTTT
TTTAACGGACATGGAGATGACAAGGATTAGGGCGAAAACAAACAACATGG
CATCTTGGCGCAAATTTGTGAATTTAATCCTGGGTTTAAAATTTACAAAG
GATGAACTTAAAAAGTAAGCAACACTTTTTACTTACTTTAATCgcagaaa
ttttagcgagactaattttagcgtatattagcgagtcaggaaaatcttga
ttttttttggatttattttagcgaatcacgatttccaaaaaaattatgtg
gataaattttagcgaatactcgtattacattattgattgttttaattaat
tttctaGTATTTCTTTGCTCTGAAACCCtgcctattgataaaaatgtatc
aaggcaatataaccagaaatttcgcgtggataaattttagcgatctgtcg
atttggcgtgttttagcgagatttattctagcaaaaatagggaaaactcg
ctaaaacgctaaaattagtctcgctaaaatttctacgattaaagtaatat
CACTAGGAAGAGTCACCCATATATCTAGTTCATAGAAGGCTACTAAACTA
CAATGTCACCTAAAATAATAAAAGGTTTCCTAATCATTTTcgatgtttct
tagatgtttctacATGAGGTAAATGATGTATGTCAAAAAGATAATTTGCa
ttaaattgttcaaaattgATTGCGAACCTAAACATGTGCAGATCAttatt
ttctgatttatttAAGTAGAGTCATCTTAGGGAGATAAATAAATAACAGC
CATTTGTTTATCTCTAGTCAAACCCATATTGAAAAAAAGAGTATAACCTG
GGGCAGCAGGCTTGTCAACAGCCTAAGGATTTAGAAATCTTAGTTGACAA
ATGCAAAATTTGACTCAaactttaataaaatttttaattttcatctaCTA
GAAGTTCAGCTTTAGGATTAGCAGATAAAAAGACCGGACGAGTAGGACCT
GCGTTAAATCCATTCATCATTAATGAATTATCAAGTAAGATCCTTTCCTC
TAACAATGACAGCTGATTTTCTGATACAAAAAAGACAAGTCAAATTTAAC
GATTTCCccacaaaaaatcttttaagtgTCGTGTTCCCTTGTTTGATAGC
CCGCACAACCCTTGAATTTTTGTAGAGTTATTTTTCTCTGAAGAAAGTCC
CATCACATTTTCCATGACACGTTTGAGTTTGAACGATTCTTCCTAGTTTC
ATACCAAATCACTaaaaatattccattttcattgcGCAAGCATTTATAGA
AATTTTGCTGAGGATTCATTTTAGTTTCTTCTCGTGGTAAACACCATCTT
TATTCCAGTTAAGCATCTAGGTTTTGTAATTTCAGAAGTTGACAGAGGAC
TGATAAAAATAAAGACTTACCTGAATGATTATTTATCATGATTTTACTCA
ATTTTAGCATATACA Coding sequence (CDS) from alignment at scaffold_495:238714..243428+ >TCONS_00069160 ID=TCONS_00069160|Name=TCONS_00069160|organism=Clytia hemisphaerica|type=CDS|length=2412bp|location=Sequence derived from alignment at scaffold_495:238714..243428+ (Clytia hemisphaerica)
ATGGGGTGCATCTCACCACTATCACGCAACTCCTTAAAGGCAAAGTCATA
CTTCCTGACACCCAAGCTAAAAGCAACTACATCCACACCCAAGACAACAC
CCTCCTCCATCAACAAATCTAACAAAACAGCATCATTAATATCATCCCCA
GTAAACAAGCCCGTCCAAACATCATCGTCAGTCGTCAGCAAGTCCATCCA
AACGTCATCCTCAGTCAGCAAGCCAATCAAAAAGTTATCCTCAGTCAGCA
AGCCAATCGAAAAGTCACCATCCACTTTAAGCAAGCCCATCCAAATAGCC
ACATCAGATCATAATTCAATACCAATAACTTCAAATAATCCATCTAATGA
AACATCAGCCGGGTTAAAACAGCTGGGTGATTGCACACCGCACATTTTTT
TAACGGACATGGAGATGACAAGGATTAGGGCGAAAACAAACAACATGGCA
TCTTGGCGCAAATTTGTGAATTTAATCCTGGGTTTAAAATTTACAAAGGA
TGAACTTAAAAAAAGTTCAGCTTTAGGATTAGCAGATAAAAAGACCGGAC
GAGTAGGACCTGCGTTAAATCCATTCATCATTAATGAATTATCAACATAT
ACAATGGGGTGCATCTCACCACTATCACGCAACTCCTTAAAGGCAAAGTC
ATACTTCCTGACACCCAAGCTAAAAGCAACTACATCCACACCCAAGACAA
CACCCTCCTCCATCAACAAATCTAACAAAACAGCATCATTAATATCATCC
CCAGTAAACAAGCCCGTCCAAACATCATCGTCAGTCGTCAGCAAGTCCAT
CCAAACGTCATCCTCAGTCAGCAAGCCAATCAAAAAGTTATCCTCAGTCA
GCAAGCCAATCGAAAAGTCACCATCCACTTTAAGCAAGCCCATCCAAATA
GCCACATCAGATCATAATTCAATACCAATAACTTCAAATAATCCATCTAA
TGAAACATCAGCCGGGTTAAAACAGCTGGGTGATTGCACACCGCACATTT
TTTTAACGGACATGGAGATGACAAGGATTAGGGCGAAAACAAACAACATG
GCATCTTGGCGCAAATTTGTGAATTTAATCCTGGGTTTAAAATTTACAAA
GGATGAACTTAAAAAAAGTTCAGCTTTAGGATTAGCAGATAAAAAGACCG
GACGAGTAGGACCTGCGTTAAATCCATTCATCATTAATGAATTATCAACA
TATACAATGGGGTGCATCTCACCACTATCACGCAACTCCTTAAAGGCAAA
GTCATACTTCCTGACACCCAAGCTAAAAGCAACTACATCCACACCCAAGA
CAACACCCTCCTCCATCAACAAATCTAACAAAACAGCATCATTAATATCA
TCCCCAGTAAACAAGCCCGTCCAAACATCATCGTCAGTCGTCAGCAAGTC
CATCCAAACGTCATCCTCAGTCAGCAAGCCAATCAAAAAGTTATCCTCAG
TCAGCAAGCCAATCGAAAAGTCACCATCCACTTTAAGCAAGCCCATCCAA
ATAGCCACATCAGATCATAATTCAATACCAATAACTTCAAATAATCCATC
TAATGAAACATCAGCCGGGTTAAAACAGCTGGGTGATTGCACACCGCACA
TTTTTTTAACGGACATGGAGATGACAAGGATTAGGGCGAAAACAAACAAC
ATGGCATCTTGGCGCAAATTTGTGAATTTAATCCTGGGTTTAAAATTTAC
AAAGGATGAACTTAAAAAAAGTTCAGCTTTAGGATTAGCAGATAAAAAGA
CCGGACGAGTAGGACCTGCGTTAAATCCATTCATCATTAATGAATTATCA
ACATATACAATGGGGTGCATCTCACCACTATCACGCAACTCCTTAAAGGC
AAAGTCATACTTCCTGACACCCAAGCTAAAAGCAACTACATCCACACCCA
AGACAACACCCTCCTCCATCAACAAATCTAACAAAACAGCATCATTAATA
TCATCCCCAGTAAACAAGCCCGTCCAAACATCATCGTCAGTCGTCAGCAA
GTCCATCCAAACGTCATCCTCAGTCAGCAAGCCAATCAAAAAGTTATCCT
CAGTCAGCAAGCCAATCGAAAAGTCACCATCCACTTTAAGCAAGCCCATC
CAAATAGCCACATCAGATCATAATTCAATACCAATAACTTCAAATAATCC
ATCTAATGAAACATCAGCCGGGTTAAAACAGCTGGGTGATTGCACACCGC
ACATTTTTTTAACGGACATGGAGATGACAAGGATTAGGGCGAAAACAAAC
AACATGGCATCTTGGCGCAAATTTGTGAATTTAATCCTGGGTTTAAAATT
TACAAAGGATGAACTTAAAAAAAGTTCAGCTTTAGGATTAGCAGATAAAA
AGACCGGACGAGTAGGACCTGCGTTAAATCCATTCATCATTAATGAATTA
TCAACATATACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069160-exon-scaffold_495-1491911889:238714..239672 | TCONS_00069160-exon-scaffold_495-1491911889:238714..239672 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1510915933:238714..239672 | TCONS_00069160-exon-scaffold_495-1510915933:238714..239672 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1575043694:238714..239672 | TCONS_00069160-exon-scaffold_495-1575043694:238714..239672 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1491911889:241085..241150 | TCONS_00069160-exon-scaffold_495-1491911889:241085..241150 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1510915933:241085..241150 | TCONS_00069160-exon-scaffold_495-1510915933:241085..241150 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1575043694:241085..241150 | TCONS_00069160-exon-scaffold_495-1575043694:241085..241150 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1491911889:241341..241706 | TCONS_00069160-exon-scaffold_495-1491911889:241341..241706 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1510915933:241341..241706 | TCONS_00069160-exon-scaffold_495-1510915933:241341..241706 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1575043694:241341..241706 | TCONS_00069160-exon-scaffold_495-1575043694:241341..241706 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1491911889:241979..242127 | TCONS_00069160-exon-scaffold_495-1491911889:241979..242127 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1510915933:241979..242127 | TCONS_00069160-exon-scaffold_495-1510915933:241979..242127 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1575043694:241979..242127 | TCONS_00069160-exon-scaffold_495-1575043694:241979..242127 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1491911889:242915..242997 | TCONS_00069160-exon-scaffold_495-1491911889:242915..242997 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1510915933:242915..242997 | TCONS_00069160-exon-scaffold_495-1510915933:242915..242997 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1575043694:242915..242997 | TCONS_00069160-exon-scaffold_495-1575043694:242915..242997 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1491911889:243421..243428 | TCONS_00069160-exon-scaffold_495-1491911889:243421..243428 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1510915933:243421..243428 | TCONS_00069160-exon-scaffold_495-1510915933:243421..243428 | Clytia hemisphaerica | exon |
| TCONS_00069160-exon-scaffold_495-1575043694:243421..243428 | TCONS_00069160-exon-scaffold_495-1575043694:243421..243428 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_495 | supercontig | scaffold_495:238714..243428 + |
Blast
The following BLAST results are available for this feature:
|
