|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069166 ID=TCONS_00069166|Name=TCONS_00069166|organism=Clytia hemisphaerica|type=transcript|length=3299bpRun BLAST on NCBI protein sequence of TCONS_00069166-protein >TCONS_00069166-protein ID=TCONS_00069166-protein|Name=TCONS_00069166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=515bp MDLVVFASAFIRNSDHKDDLINKKRSLQSKLFLYLEKNKGIYHGLIIVVIRun BLAST on NCBI transcript from alignment at scaffold_495:31976..67990- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069166 ID=TCONS_00069166|Name=TCONS_00069166|organism=Clytia hemisphaerica|type=transcript|length=36015bp|location=Sequence derived from alignment at scaffold_495:31976..67990- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_495:31976..67990- >TCONS_00069166 ID=TCONS_00069166|Name=TCONS_00069166|organism=Clytia hemisphaerica|type=CDS|length=23220bp|location=Sequence derived from alignment at scaffold_495:31976..67990- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069166 vs. Swiss-Prot (Human)
Match: KCNQ5 (Potassium voltage-gated channel subfamily KQT member 5 OS=Homo sapiens GN=KCNQ5 PE=1 SV=3) HSP 1 Score: 185.652 bits (470), Expect = 7.788e-48 Identity = 157/515 (30.49%), Postives = 262/515 (50.87%), Query Frame = 1
Query: 301 KKRSLQSKLFLYLEKNKG---IYHXXXXXXXXXXXXXXXXSTIPGYDNGWLFKVRLSVETLLLVIFLTEYLLRVWSSGAHGTYGAAGGWKKYIITPHMXXXXXXXXXXXXXXXXXXXN--LDPEEXXXXXXXXXXXXXXXXXXXGAFGAFWRVFKKHRKELLTCWYMGFLMVTFVSFLVYSLEQKRTNDTYTLNNLFDGVYWGVISLTTIGYGDIKPETTSGKILICCFAVFGTCFLAMPAGIIGSGFALQVAEQQKEKHVNRRRRPAAVLIQSFWRKYAADNDFP--ATWIPH------------------TTQHKDYESNL-LRTPR-KSINHQRSSKPDMFGVPFTPIIPSIHVTRNENGKGMXXXXXXXXXXXXXAEIP------------DDFNFSNGYL--IPAKKLTTAEKIALRFIRFLKCISSMKKFRQARRPYDERDILDQFASAQIEMFAKLRDVKQRIESC----QICSDSKAEKNLNYISKLNDKVGSLHSEISETKELLKI 1710
K R +Q+ L+ LE+ +G IYH + +++ L L + STIP + L +E +++V+F E+++R+WS+G Y G ++ P +ID +V+++S+ +V + + R L LQ+LR++R+DR+ G + V H KEL+T WY+GFL++ F SFLVY +E+ + + D ++WG I+LTTIGYGD P T G++L FA+ G F A+PAGI+GSGFAL+V EQ ++KH +RR PAA LIQ WR YAAD ATW PH ++Q ++ + + +PR +SI +++S D P T I T+ + + + P DD G + + LT K +R IR +K + +KF++ RPYD +D+++Q+++ ++M +++ ++ R++ QI SD K+ + + + D + L + K++ I
Sbjct: 107 KYRRVQNYLYNVLERPRGWAFIYHAFVFLLVFGCLILSVFSTIPEHTK-LASSCLLILEFVMIVVFGLEFIIRIWSAGCCCRYRGWQGRLRFARKPFCVIDTIVLIASIAVVSAKTQGNIFATSALRSLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDANKE---FSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAANLIQCVWRSYAADEKSVSIATWKPHLKALHTCSPTKKEQGEASSSQKLSFKERVRMASPRGQSIKSRQASVGDRRS-PSTDITAEGSPTKVQKSWSFNDRTRFRPSLRLKSSQPKPVIDADTALGTDDVYDEKGCQCDVSVEDLTPPLKTVIRAIRIMKFHVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQTRVDQILGKGQITSDKKSREKITAEHETTDDLSMLGRVVKVEKQVQSI 616 The following BLAST results are available for this feature:
BLAST of TCONS_00069166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.