TCONS_00069185 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069185
Unique NameTCONS_00069185
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1914

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069185 ID=TCONS_00069185|Name=TCONS_00069185|organism=Clytia hemisphaerica|type=transcript|length=1914bp
GAACGGAGGAAGTGACCCAACTCTTTTTTTTCAGACAAATTTACGTCAGA
AATCTCTTCTATAAAGACTGAATGTACATAAGGTACTTTTTTACGAGGTA
AAATTTGCTCTGGATCAAATTTTTGTAGCATTAAACAAACACAagagatt
ttaataaaatattgataataattttccAGGTGCTTTATAAGTAATTCtaa
acaaaacattaattttacGAAAAATTCGATGGAAAATTCGAGTCAGGGGT
TCAAACATCCATTTGAAGTTCGGAGAAGAACgtcttgaaaaatataaaag
gaGAGAAGCCAAGGGGTCAGCAATCattaaaactcgaaaaaaagttttga
ttatttctTTTGACTGaagaattgaaatgaaattgaatttcatCACCCTC
CTTGCTCTTGGGCTGACAGCATTGGCCGGGCACACGTCGGCTCTTTGCAT
GGACACTTTACCAGGATGTGATGTGACCAAATGTGGAGGACTTACTGGAA
AGGTGTGGTGTAAGAAAACATGCGGAACTTGTGTTTCAACAACTCAAGCC
CCAACCGGACCAGcCACAAACGCACCAAATTATAAAGGCTGTGGTTACCA
AGGATACCAGAGTCGTGTAGTTGGAGGCACCAAATCCAAACAATCACAAT
GGCCATGGCAAGCATCGTTGAGTATCGGTGGTAAATTCAGCTGTGGTGCA
ACGTTGATTGCTCCACAATGGGTGGTTACTGCTGGTCATTGCATCCAAGC
ATACAGGAGAGCCAACCAATATTCCTTCAGATTCGGCGATTTGGACAGAT
ACGATATCAGTGGTAAAGAGTATTACGCTAGAGGAGAAAAGCTTTTCAAA
CACCCTTCATACAACACACCATTACGAAAGGACAACGATATCGCATTAAT
AAAGCTGGATCGTCCAGTTCCTTTTTCCTCTGATATCACACCCGCCTGTC
TACCACGCACTGGCGAACAAATCCCTGTTGGAAAGAAATGCTTTGTCTCA
GGTTGGGGAAAGACGGATTACGCTGGTCAAGCAGTATACGATCTCCAACA
CGCCCCATTACAAATCATCAGCAACAAACAATGTTGTGAAACAAACTGTG
ATCGATGGACACCAAACATCCCTAACAAAATGGTGTGCGCAAAAAATCGT
GAACAAGCAACTTCAGCTTGTCATGGTGATTCTGGAGGGCCATTTGTTTG
TCAAGGCAGCAACGGCCGTTGGTTTTTACAAGGTGTGGTCAGCTGGGGAT
CGGGTCGATGTAATGCGTTCCAAAAGGCGACCGTCTTTACACGTGTTACA
GAATACATGACTTGGATCAACGAAAccatcaaaaataattaatcaatttt
tagtaattttgttgttgttagtTTTTGCTCTAAAATGTAGAAAATATGGT
ATCGTTTGGAAAAGAAATACGGTGACTCTAAATTTACCACTAAAAGACTA
AACCCAATTTTTTGTTCGAAGTGCAATGCAATTCTTAAGTCATCACATTT
TTTGCCTGAGAATGGTTTCTAGCCTTTGGGTATGTTTCTTCATTGCTTTT
ATTGGATCCAGTCAGAAATAATGTATCatgatgttttttcttaaactGGA
GTTCCTACGGTATAATAGCGTTTGTCACTTATTCATGTATCtatttactt
tctttttttattaaaaatatccaacatataaaaaaattatcaaaattgaa
aaaaaagtagtagaaaaatataaacaactaTTTAGGTTCCATCATAtact
aaaaatatttcaaactgaTCTAAAACATATTTTGGAAGGATTCCTCCTTT
ACTCTTTCTGAGATTGGATATCCATTGTTGAATAGGTTGTATACAGAGCT
GTGGGTGATAATGCAAAGCTTCCTTCAAAACTGTCGCTGCTGCATATTGA
ACCTTTTCGTGTAC
Run BLAST on NCBI

transcript from alignment at scaffold_496:162587..167776+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069185 ID=TCONS_00069185|Name=TCONS_00069185|organism=Clytia hemisphaerica|type=transcript|length=5190bp|location=Sequence derived from alignment at scaffold_496:162587..167776+ (Clytia hemisphaerica)
GAACGGAGGAAGTGACCCAACTCTTTTTTTTCAGACAAATTTACGTCAGA
AATCTCTTCTATAAAGACTGAATGTACATAAGGTACTTTTTTACGAGGTA
AAATTTGCTCTGGATCAAATTTTTGTAGCATTAAACAAACACAagagatt
ttaataaaatattgataataattttccAGGTGCTTTATAAGTAATTCtaa
acaaaacattaattttacGAAAAATTCGATGGAAAATTCGAGTCAGGGGT
TCAAACATCCATTTGAAGTTCGGAGAAGAACgtcttgaaaaatataaaag
gaGAGAAGCCAAGGGGTCAGCAATCattaaaactcgaaaaaaagttttga
ttatttctTTTGACTGaagaattgaaatgaaattgaatttcatCACCCTC
CTTGGTAAGTACATTGAAGTCTCTATGATTCGTACTCGAATGTTTAATTA
ACTCGAACGAGTTTTCTGGTCCCTCCCAGTTGAAATTGCTTTTTAAACCT
TACTCCAAAACTCGAAATCTCATTAATCTACTTAACTGCGTTTCCATGCG
CgtgtcgagttatagagactcttATAGTTAGATTTAAGAAAGACCGTAAA
AATTTAGTGTCGTGAACAGCTAGAGGGTTGAAATGCGCAAAAACaggatt
caaatttttcaatttcaagtggAATCTTTGACTGCCGTGTGGAACGTCTA
AGTACAAAATCTATAATGGTTATCATATTGTACCTGTAATCTGCAACGAA
AACTGATATCATCTCGATATAATTATTGTATAACTATGTTACTGTAATAC
GTAGATTATGAATGACTACAGTCTCATATATACCTGGTGATAACTCCAAT
CAATAAATCTCTTTTACTCTCTAGCTCTTGGGCTGACAGCATTGGCCGGG
CACACGTCGGCTCTTTGCATGGACACTTTACCAGGATGTGATGTGACCAA
ATGTGGAGGACTTACTGGAAAGGTGTGGTGTAAGAAAACATGCGGAACTT
GTGGTATGTGTTGTTGCTCTCTTTCCCCCTTTTTAAAAGACATCGTTTAA
CCATCTTCTAACATTTGCTTTCAcagcatttttcaacaaaagacatgaca
attttctttcctttcccCACCTTGGACGAGTAAAAAATTCGAAGAATTCT
TTtatttaccttatcggccctttttacaccggaccttattggcgttattt
ttgggctcgtggcgtaataagggccggcgtaaaaagggccgNGCACAAAA
CCCCATTGAGTAGGGCAAAAAAACTTCTAATTGAACCAAATCACCCTCTC
TATAATTTTAGTTTCAACAACTCAAGCCCCAACCGGACCAGGTAGGTTTG
ATGAAGATTTAAATCaactaatttatcaatttttctaCGATTTGTACTTA
AGATTCTTTTTGCTTTTCGAAATTAGTAATTAATTTGAATGAACAAGTGG
TCAAGTAGTTTATTGTGTTCTATCATAACCCCCGACACTGCAGTTAAGTT
GATCACCGTAGGTGCGACCCTTAAGGGTACGCTTTTCAGGCTTCCTAAAG
TACACGGTAAGGgttgttgaatttttttcaagaaaatatacCGTTAGGGT
AGATTTTTTGCATATTTACTACTAGAAGGGTCAAATTTTGAGACCCTAAT
TTTTGTTCACATGAAGTTTTCAAGTCGCCCTCCCCATAAAGCTCGCTTAC
GTGCTCtaattgtttctttttaattttacagcCACAAACGCACCAAATTA
TAAAGGTAGGTTTTTATTTCATCAAACTAAAAATAGTGTCCAAAGAGTCA
GGATAGTAGGCCATAAGCACTCGTACCTGATAAACAAGGCGTTGGTTCTG
AATAGAGACTAAACAAACTCGTCCCAGTGTATACCAggttttatttacgt
tactgaatgacgccagagaatatatTATGTGACGccatcagtaagcatca
aaaagttGATAATACGNTGTTCTGAATAGAGACTAAACAAACTCGTCCCA
GTGTATACCAGGcattatttacgttactgaatgacgccagagaatatatT
ATGTGACGccatcagtaagcatcaaaaagttgataatacgcagggataCA
AAGTTNCCCCGACACTGCAGTTAAGTTGATCACCGTAGGTGCGACCCTTA
AGGGTACGCTTTTCAGGCTTCCTAAAGTACACGGTAAgggttgttgattt
tttttcaagaaaatacacCGTTAGGGTAGATTTTTTGCATATTTACTACT
AGAAGGGTCAAATTTTGAGACCCTAATTTTTGTTCACATGAAGTTTTCAA
GTCGCCCTCCCCATAAAGCTCGCTTACGTGCTCtaattgtttctttttaa
ttttacagcCACAAACGCACCAAATTATAAAGGTAGGTTTTTATTTCATC
AAACTAAAAATAGTGTCCAAAGAGTCAGGATAGTAGGCCATAAGCACTCG
TACCTGATAAACAAGGCGTTGGTTCTGAATAGAGACTAAACAAACTCGTC
CCAGTGTATACCAggttttatttacgttactgaatgacgccagagaatat
atTATGTGACGccatcagtaagcatcaaaaagttgataatacgcagggat
aCAAAGTTAGACTAAATAAAATCTGgctattttaaaaacaaaatgagtgG
GTGTTAGGAGAAAAAATACAGCTGATGCTCTGCTctttaattcgacgttc
tactattcgatatgctcctttattcgataaaaatccaATTCCTTTTAAAC
ATCGaactagagagcgtcaactgtattaacCGACATGGGGTACGACAATT
TGTGTTCCCGGAGTACTGGTCTTTTCTGAGTGCTGTGAATAcacataaaa
tgaaaattgaatgagAATCCAACTTACAGTCATGTTGCTATATTTACAAC
CATAGGCTGTGGTTACCAAGGATACCAGAGTCGTGTAGTTGGAGGCACCA
AATCCAAACAATCACAATGGCCATGGCAAGCATCGTTGAGTATCGGTGGT
AAATTCAGCTGTGGTGCAACGTTGATTGCTCCACAATGGGTGGTTACTGC
TGGTCATTGCATCCAAGCATACAGGAGAGCCAACCAATATTCCTTCAGAT
TCGGTGAGTGGCTATATAATAAATATACATGGAGTcttattaaagggaca
taacagtacttgcgaaatttgtaaacaaactgtatgcagcggatacaaaa
tcaaaacaaatatcacatgtcaaaataaaaaatcaaNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcacg
tgattttaattgttctttttaatgacacgtggttcgcgcaatgtttacat
tttactacttttatgtccctttaaattaGTACTGTTTAGCGATACCGTGA
TTTTCACGTTTGAATACTCCAAAGCCGTAACTGAATGcacaatgttttct
ttaaaggAACTTGCAAAATTAGAGCCTGAGATTTTGCAGAGAAAATACAG
CTATCGATCTGAGGAGGAAAATAAacagttgcaaattaaaagatttcttt
attTTACATAACTCTATACTCTTTTTCCAATCTTTCACATCAGGCGATTT
GGACAGATACGATATCAGTGGTAAAGAGTATTACGCTAGAGGAGAAAAGC
TTTTCAAACACCCTTCATACAACACACCATTACGAAAGGACAACGATATC
GCATTAATAAAGCTGGATCGTCCAGTTCCTTTTTCCTCTGATATCACACC
CGCCTGTCTACCACGCACTGGCGAACAAATCCCTGTTGGAAAGAAATGCT
TTGTCTCAGGTAAACAATCAAGAAACCAAAAGAGACCAGCTTaatttact
ttttgaaatttctgacaAATTAACCAAACTATGGACAATAAAGTTCAGTT
AAGACTGAAGAAAGTTGATTTGtcattttcagagaaaaaattgatttgtc
attttcagagaaaaaattcATAGGTGGATGAAAACTGCCAAAAGTAAAAT
GTCCAGGGTCCAATGTTGATTTATTGTCTTGGGTGTTTAGAGAGTAAATA
ATCAAAATGTCCAGTGATAGTTCATTGATAAAAATGATCTATCGTTCAAC
CCCATGAGAAAGTTTTCTTAAAGAGAAATCCTAgctaatttacaaaaaat
tataGTCATACGATTTGTACCTTACAGGTTGGGGAAAGACGGATTACGCT
GGTCAAGCAGTATACGATCTCCAACACGCCCCATTACAAATCATCAGCAA
CAAACAATGTTGTGAAACAAACTGTGATCGATGGACACCAAACATCCCTA
ACAAAATGGTGTGCGCAAAAAATCGTGAACAAGCAACTTCAGCTTGTCAT
GGTGATTCTGGAGGGCCATTTGTTTGTCAAGGCAGCAACGGCCGTTGGTT
TTTACAAGGTGTGGTCAGCTGGGGATCGGGTCGATGTAATGCGTTCCAAA
AGGCGACCGTCTTTACACGTGTTACAGAATACATGACTTGGATCAACGAA
AccatcaaaaataattaatcaatttttagtaattttgttgttgttagtTT
TTGCTCTAAAATGTAGAAAATATGGTATCGTTTGGAAAAGAAATACGGTG
ACTCTAAATTTACCACTAAAAGACTAAACCCAATTTTTTGTTCGAAGTGC
AATGCAATTCTTAAGTCATCACATTTTTTGCCTGAGAATGGTTTCTAGCC
TTTGGGTATGTTTCTTCATTGCTTTTATTGGATCCAGTCAGAAATAATGT
ATCatgatgttttttcttaaactGGAGTTCCTACGGTATAATAGCGTTTG
TCACTTATTCATGTATCtatttactttctttttttattaaaaatatccaa
catataaaaaaattatcaaaattgaaaaaaaagtagtagaaaaatataaa
caactaTTTAGGTTCCATCATAtactaaaaatatttcaaactgaTCTAAA
ACATATTTTGGAAGGATTCCTCCTTTACTCTTTCTGAGATTGGATATCCA
TTGTTGAATAGGTTGTATACAGAGCTGTGGGTGATAATGCAAAGCTTCCT
TCAAAACTGTCGCTGCTGCATATTGAACCTTTTCGTGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043124XLOC_043124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069185-exon-scaffold_496-1491911889:162587..162990TCONS_00069185-exon-scaffold_496-1491911889:162587..162990Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1510915933:162587..162990TCONS_00069185-exon-scaffold_496-1510915933:162587..162990Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1575043694:162587..162990TCONS_00069185-exon-scaffold_496-1575043694:162587..162990Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1491911889:163461..163589TCONS_00069185-exon-scaffold_496-1491911889:163461..163589Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1510915933:163461..163589TCONS_00069185-exon-scaffold_496-1510915933:163461..163589Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1575043694:163461..163589TCONS_00069185-exon-scaffold_496-1575043694:163461..163589Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1491911889:163898..163927TCONS_00069185-exon-scaffold_496-1491911889:163898..163927Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1510915933:163898..163927TCONS_00069185-exon-scaffold_496-1510915933:163898..163927Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1575043694:163898..163927TCONS_00069185-exon-scaffold_496-1575043694:163898..163927Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1491911889:164945..164968TCONS_00069185-exon-scaffold_496-1491911889:164945..164968Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1510915933:164945..164968TCONS_00069185-exon-scaffold_496-1510915933:164945..164968Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1575043694:164945..164968TCONS_00069185-exon-scaffold_496-1575043694:164945..164968Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1491911889:165492..165689TCONS_00069185-exon-scaffold_496-1491911889:165492..165689Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1510915933:165492..165689TCONS_00069185-exon-scaffold_496-1510915933:165492..165689Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1575043694:165492..165689TCONS_00069185-exon-scaffold_496-1575043694:165492..165689Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1491911889:166280..166495TCONS_00069185-exon-scaffold_496-1491911889:166280..166495Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1510915933:166280..166495TCONS_00069185-exon-scaffold_496-1510915933:166280..166495Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1575043694:166280..166495TCONS_00069185-exon-scaffold_496-1575043694:166280..166495Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1491911889:166864..167776TCONS_00069185-exon-scaffold_496-1491911889:166864..167776Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1510915933:166864..167776TCONS_00069185-exon-scaffold_496-1510915933:166864..167776Clytia hemisphaericaexon
TCONS_00069185-exon-scaffold_496-1575043694:166864..167776TCONS_00069185-exon-scaffold_496-1575043694:166864..167776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:162587..167776 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0372843	0.0405492	0.128339	0.12556	0.0145053	0	0.346626	0.341084	0.334304	0.76457	0.83071	0.620948	0.0376919	0.0782868	0.0320592	0.0345352	0	0	0.0602448	0	0.219181	0.320804	31.7107	25.1669	10.0399	14.0108	0.0777796	0.0538109	0.205538	0.159836
Blast
[Close]
BLAST of TCONS_00069185 vs. Swiss-Prot (Human)
Match: TMPS3 (Transmembrane protease serine 3 OS=Homo sapiens GN=TMPRSS3 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.017e-48
Identity = 104/251 (41.43%), Postives = 136/251 (54.18%), Query Frame = 2 
Query:  587 GCGYQ-GYQSRVVGGTKSKQSQWPWQASLSIGGKFSCGATLIAPQWVVTAGHCIQAYRRANQYSFRFGDLDRYDISGKEYYARGEKLFKHPSYNTPLRKDNDIALIKLDRPVPFSSDITPACLPRTGEQIPVGKKCFVSGWGKT-DYAGQAVYDLQHAPLQIISNKQCCETNCDRWTPNIPNKMVCAKNREQATSACHGDSGGPFVCQGSNGRWFLQGVVSWGSGRCNAFQKATVFTRVTEYMTWINETIK 1333
             CG++ GY SR+VGG  S  SQWPWQASL   G   CG ++I P W++TA HC+        ++ + G +   D     +    EK+  H  Y  P R  NDIAL+KL  P+ F+  I P CLP + E  P GK C+ SGWG T D AG A   L HA + +ISNK C   + D +   I   M+CA        +C GDSGGP VCQ     W L G  S+G G C    K  V+TRVT ++ WI+E ++
Sbjct:  206 ACGHRRGYSSRIVGGNMSLLSQWPWQASLQFQGYHLCGGSVITPLWIITAAHCVYDLYLPKSWTIQVGLVSLLDNPAPSHLV--EKIVYHSKYK-PKRLGNDIALMKLAGPLTFNEMIQPVCLPNSEENFPDGKVCWTSGWGATEDGAGDASPVLNHAAVPLISNKIC--NHRDVYGGIISPSMLCAGYLTGGVDSCQGDSGGPLVCQ-ERRLWKLVGATSFGIG-CAEVNKPGVYTRVTSFLDWIHEQME 449
The following BLAST results are available for this feature:
BLAST of TCONS_00069185 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMPS31.017e-4841.43Transmembrane protease serine 3 OS=Homo sapiens GN... [more]
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