TCONS_00069199 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069199
Unique NameTCONS_00069199
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1084

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069199 ID=TCONS_00069199|Name=TCONS_00069199|organism=Clytia hemisphaerica|type=transcript|length=1084bp
AAGCCAAGTAAGCTCAAGCACAAGCCAAACAACTTACACTGAATCTTCAT
ATGAAAGTACTCAATCTCAAGTTGTTAGCACATCAAGCCCATACGTCAGC
TCTTCGGTATCTNtcaacatcaacaagtgtcagcacatTCAAACCAGTTA
CTACTTCAGTttcatcaccatcaccatccacaagcaaaccagctccatcg
ACATCGATTGCCAGCTCATCCAGCCAAACGAGTAGCACACCATATGTCAG
TTCTTCAGTATCTACACCATCATCGAGCTCAGCATTCACCTCAATTAGTG
AaagttcaagtgtgtcaacatcaacaagtgtcagcacatTCAAACCAGTT
ACTACTTCAGTttcatcaccatcaccatccACAAGCAAACCAGTTCCATC
GACATCGATTGCCAGCTCCTCAAGCCAAGCGAGCAGCACACCATACGTCA
GTTCTTCGGTATCTACACCTTCATCGAGCTCAGCATTCACCTCAAGTAGT
GAaagttcaagtgtgtcaacatcaacaagtgtcagcacatTCAAACCAGT
TACTACTTCAATTTCATCACCATCGCCATCCTCTAGTTTTGTTTTGCCAC
CGGTTACTAGCACTCCAGTTATATTGTCTACAACTTCGGGATTTTCTGAG
cttccaaaatctttgattacACAAACCGTTGAAAGCTTTACGACGTCGGT
AGTGGAAACATCTTCAGGAGTTGTCTTCACGCCTTCCTCAGGAACAACAT
CACGCCCACCATTCcCTCCATTTACTATCCCAATACCATCGTCAAGTACT
TCATTTGCCTCATCATCGACCTCGAGTGTGTCCacatcaacaagtgtcag
cacataCAAACCAGTCACTACTTCTGTAcaatcaccatcaccatctacAA
GCAAACTAGCCCCATCGACATCAATCGCAAGCTCATCAAGCCAAGCTACA
AGCAGTACTCCATACGTCAGTACTTCTGTATTTACACCATCTTCGAGCTC
TGTATTTACCTCAAGCAGTGCaagttcaagtgtgtcaacatcaacaagtg
tcagcacataCAAACCAGTCACTACCTCTGTCCA
Run BLAST on NCBI

transcript from alignment at scaffold_496:620967..631663+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069199 ID=TCONS_00069199|Name=TCONS_00069199|organism=Clytia hemisphaerica|type=transcript|length=10697bp|location=Sequence derived from alignment at scaffold_496:620967..631663+ (Clytia hemisphaerica)
AAGCCAAGTAAGCTCAAGCACAAGCCAAACAACTTACACTGAATCTTCAT
ATGAAAGTACTCAATCTCAAGTTGTTAGCACATCAAGCCCATACGTCAGC
TCTTCGGTATCTNtcaacatcaacaagtgtcagcacatTCAAACCAGTTA
CTACTTCAGTttcatcaccatcaccatccacaagcaaaccagctccatcg
ACATCGATTGCCAGCTCATCCAGCCAAACGAGTAGCACACCATATGTCAG
TTCTTCAGTATCTACACCATCATCGAGCTCAGCATTCACCTCAATTAGTG
AaagttcaagtgtgtcaacatcaacaagtgtcagcacatTCAAACCAGTT
ACTACTTCAGTttcatcaccatcaccatccACAAGCAAACCAGTTCCATC
GACATCGATTGCCAGCTCCTCAAGCCAAGCGAGCAGCACACCATACGTCA
GTTCTTCGGTATCTACACCTTCATCGAGCTCAGCATTCACCTCAAGTAGT
GAaagttcaagtgtgtcaacatcaacaagtgtcagcacatTCAAACCAGT
TACTACTTCAATTTCATCACCATCGCCATCCTCTAGTTTTGTTTTGCCAC
CGGTTACTAGCACTCCAGTTATATTGTCTACAACTTCGGTTAGTTTTTTG
CCACTACTTCCTCctattctttttgaaaattttatctattttagTTCTTT
TCCTGTGTCACCTGGTTGGACCTTAGCCCGACTTGACAACTCGGCTAAAA
TTTTGTTCCCGGTTGAAGAAAATCCCCTGTTATAAATTAAattggaaatt
gactttggtTTCATTTAAAGTTTAAAGGAAAAATTGTACTTCAAAATCAC
CCCCACTCGATTTCTTTAGCTGAGAACAGTAGGATTTATATCCCCACTGG
GATGtcgaagaaattttcatttcacagtcgaaaaaAATACGACCGGGGCC
GTGAGATAGGAATGTAGTTTCATTTGCATACTTCTGTAGGTATTTTTTTG
CAAGTtgcaaaaggaaaaaaagaagtTCAACATGAGTCATTGATTtcaat
ttatctcaaaatattcattgtttttttttttaccaggGATTTTCTGAGct
tccaaaatctttgattacACAAACTGTTGAAAGTTTTACGACGTCGGTAG
TGGAAACATCTTCAGGAGTTGTATTCACGCCTTCATCAGGAACGACCTCA
AAACCACCATTCGTAAGTATACATTACTAATATTCATACATCAATAAATT
TGTGCATACGTAGAAATAGAAGATGTTCTTTCTTGGTCTAGCGGTTTGAA
AGAATAGATGAAAGATCTTCTTTATAATTACGGTACAACCtttaaaaatt
aagaacaatttttaaacCGTGCAGCAAAACGAGCTTAAGAGTCATTTTCT
GTAAGAACCAGGCAGGTGGTGAtattagaaaaatttgaaaaatgcctCTT
AAAGTTGTGACAAAGAAAAcgggcaaaaaaagtgaaattttttattggct
gtaaatccgccattatggattttgggGACCTGAAATTTTGGGATTCTGAG
TTTTTCACTATTGTTTACCATATCCAAAAATGGAGGAATTCAAGTTTTTC
TGCTATCACCACCTGCCTGGttcttacagaaaatggctcttaatcAAGAC
TCTCATTTTTATGAGTGAAAGATAAAATTTCTAGTTTTTTCAGAAAGAAT
ATTTAGTAAAAATAATGTGATTTAAGTTGATACAAACCTAATACGTCTCT
TCATAACCAATCAAATCATTGTATTTTGAATACTGGGAGTGGTATTTAAG
CAAAAATAGCTGCAATACGGAAAGCAAGATCGACTTTTTACTTCGCAAGT
GTTGTCAACAGTTACAAGAACAGCAAAAAGTCAAGTTAGGATTGCGTTCT
TTCCCTTTTTTGGTCTCTTTAAGGGCAGCAAAAccatggaaaatcaaaac
aatctctCTTAGtattaagaaatttttctttgttgaaaTGTGTTAAGCAA
CTTTATGACAGCAGATAAACCTTTAAACCCTAAAAgatatttatatatat
atatatagtcaagaagtataaaaccttcaactacttaaaatggaaacaat
aaagacaaaactcacaaaacaaaaagacaatataaatacaacaaaaatct
aNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNATCAGGTtggaattgaaaaggaaa
aaatgatgacatagacatccatcaatgcaaaactagtgatctaaagtgac
tacaaggaagaaagcgactcaatatgagttaatatggaaagaagtaactc
aatatgagtcaaaagatttttcaagaaaacacattatctgttcctcagtt
ttcgacctacaccTACGACCTACGACCTACCTTATATATATTTAACTTAA
GTTTCTAGCGGAGGGAGGGACTTTATTAATGTTTAGTACTATTTTGTATT
ATATGTTCGTAATGTACCCTGTGtttatgtttcaataaagaaaaaaaaat
gatattttttattgGCTGTAAATTGAATAAATACCGTCACTTCACATTGT
GACCAGAGTGATAGAGTATCCTGATAGTCTTGGTCACTCCTGAATGAAGC
CGTAAATTAAGATTTCTTCTTTATCTCACCATCATCATCTCGGTAAAGAA
ATACATCAATGTGAAGTGTCATTCACTTAAGTGGCTTAAATACCACTCCC
AGTATACAAAATACAATGATTTGATTGGTTATGAAGACGTATCAGGTTTG
TATCAACCTAAAACAcattataaagaaaataaaacttaGAGAATAATGAT
GTGGGAAAAGATCAAGAGCGATACATAAGCTGAATACATGAATTATAATG
CTCTGTTTTAAAAGTCTAACTGTTGTCACACAATGTTAGTCAAACATTAA
GAAGggaagaaaataaaagaagactCGTATCTCAAAATTTAAACTAACTG
AAGCAAAAGTAACTTGAACACTTTGTTTTTTTAGCCTCCATTTACTATCC
CGATTCCATCGTCAAGTACTTCATTTGCCTCATCATCGACCTCGAGTGta
tcaacatcaacaagtgtcagcacatacaaaccagtcactacttctgtcca
atcaccatcaccatctacAAGCAAGCCAGCTCCATCGACATCGATCGCAA
GCTCATCAAGCCAAGCTACAAGCAGTACTCCATACGTTAGTTCTTCTGTA
TCTACACCATCTTCGAGCTCTGTATTTACCTCAAGCATNTCTGTATCTAC
ACCATCTTCGAGCTCTGTATTCACCTCAAGCAGTCCaagttcaagtgtgt
caacatcaacaagtgtcagcacatacaaaccggtcactacttctgtccaa
tcaccatcaccaactacaagcaaaccagctccatcgACATCGATCGCAAG
CTCATCCAGCCAAGCTACAAGCAGTACTCCATACGTTAGTTCTTCTGTAT
CTACACCATCTTCAAGCTCAGTATTTACCTCCAGCAGTGAAAGCTCAAGT
GTATTaacatcaacaagtgtcagcacataCAAATCAGTCACTACTTCTGT
ccaatcaccatcaccatctacaagcaaaccagctccatcgACATCGATTG
GTAGCTCATCAAGCCAAGCAACAAGCAGTACTCCATACGTTAGTTCTTCT
GTATCTACACCATCTTCGAGCTCTGTATTCACCTCAAGCAGTCCaagttc
aagtgtgtcaacatcaacaagtgtcagcacatacaaaccagtcactactt
ctgtccaatcaccatcaccatctacaagcaaaccagctccatcgACATCG
ATCGCAAGCTCATCCAGCCAAGCTACAAGCAGTACTCCATACGTTAGTTC
TTCTGTATCTACACCATCTTCAAGCTCAGTATTTACCTCCAGCAGTGAAA
GCTCAAGTGtatcaacatcaacaagtgtcagcacataCAAACCAGTCACT
ACTTCTGTCCAATCTCCATCACCATCCacaagcaaaccagctccatcgAC
AACGATTGCTAGCTCATCAAGCCAAGTAAGCTCAAGCACAAGCCAAACAA
CTTACACTGAATCTACATATGCAAGCACTCAATCTCAAGTTGTGAGCACA
TCAAGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNCTACTTCTGTccaatcaccatcaccatctacaagcaaaccagc
tccatcgACATCGATCGCAAGCTCATCAAGCCAAGCTACAAGCAGTACTC
CATACGTTAGTTCTTCTGTATCTACACCATCTTCAAGCTCTGTATTTACC
TCAAGCAGTGAAAGCTCAAGTGtatcaacatcaacaagtgtcagcacata
CAAACCAGTCACTACTTCCGTccaatcaccatcaccatctacaagcaaac
cagctccatcgACATCGATTGCAAGCTCATCAAGCCAAGCTACAAGCAGT
ACTCCATACGTTAGTACTTCTGTATCTACACCTTCATCGAGCTCAGTATT
TACCTCAAGCAGTGCaagttcaagtgtgtcaacatcaacaagtgtcagca
cataCAAACCAGTTACTACTTCTGTCCAATCACCATCACNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAACCAGCTCCATCGACATCGATTGCAAGC
TCATCAAGCCAAGCTACAAGCAGTACTCCATACGTTAGTACTTCTGTATC
TACACCATCTTCGAGCTCTGTATTTACCTCAAGCAGTGCaagttcaagtg
tgtcaacatcaacaagtgtcagcacataCAAACCGGTCACTACTTCCGTc
caatcaccatcaccatccacaagcaaaccagctccatcAACTTCGATCGC
AAGCTCATCAAGCCAAGCAACCAGCAGTACTCCATACGTTAGTACTTCTG
TATCTACACCTTCATCGAGCTCAGCATTTACCTCAAGCAGTGCaagttca
agtgtgtcaacatcaacaagtgtcagcacataCAAACCAGTTACTACTTC
TGTccaatcaccatcaccatctacCAGCAAACCAGCTCCATCAACTTCGC
TTGCAAGCTCATCAAGCCAAGCAACCAGCAGTACTCCATACGTTAGTACT
TCTGTATCTACACCATCTTCGAGCTCTGTATTTACCTCAAGCAGTTCAAG
TTCAAGTGTGTCACAatcaacaagtgtcagcacataCAAACCGGTCACTA
CTTCAGTCCAATCTCCATCACCATCCACAAGCAAACCAGCTCCATCGACA
TCGATTGCTAGCTCATCAAGCCAAGTAAGCTCAAGCACAAGCCAAACAAC
TTACACTGAATCTACATATGCAAGCACTCAATCTCAAGTTGTGAGCACAT
CAAGCTCATATGTCAGTTCCTCGGTATCTACACCTTCATCGAGCTCAGCA
TTTACCTCAAGCAGTAAaagttcaagtgtgtcaacatcaacaagtgttAG
CACATACAAACCGGTTACTACTTCTGTccaatcaccatcaccatctataa
gcaaaccagctccatcgACATCGATTGCAAGCTCATCAAGCCAAGCTACA
AGCAGTACTCCATACGTTAGTACTTCTGTATCTACATCATCTTCGAGCTC
TGTATTTACCTCAAGCAGTTCaagttcaagtgtgtcaacatcaacaagtg
tcagcacTTACAAACCAGTCACTACTTCTGTCCAATCACAATCAACCTCG
ATCACAAGTTTAGCACCTTCAAGCTCGGTAGGTGTTCTTTGAACATTGGT
TTAGAGGAAAATGCTCTTACTATTgtttttagtttattttcaTAAGACAG
ACACAAATAATTAATATGAAAAAGAACTTTAAGTCAATTAGGCAATGACT
TAATATTATAAAATCCACTGGCGAGGGGTAGGGTCTTTTTCTTTCAAGTT
TGTTAGCAAAAACGTTGTTTTTCAAATACTATTTGCCTCAAGTGCCATGA
TTGCTTTTAAACGAAGGAAAGGTGTTCCGAAATTTGGTCTTCTAAATTAC
AATAATAATTACTTTTTTCTACCAGGGATTTTCTGAGcttccaaaatctt
tgattacACAAACCGTTGAAAGCTTTACGACGTCGGTAGTGGAAACATCT
TCAGGAGTTGTCTTCACGCCTTCCTCAGGAACAACATCACGCCCACCATT
CGTAAGTAGTGCTTATAAAGtttccattgaatatttcttTCATGAAACTA
TATATCTAAGTACTTTCAACAGGGATACGTATCCCACCAGTCCCTTCTAA
CATTTCCAATCATGTTTATTAGTAGACTAGAAAATACAACCGTAGCAAAG
CCTTCTTATCAGAATTTAGTTTTGAGGCTAATGGTAATACTTATCTATGC
ACTTGAAATCTTCGACCCAATAATAGTCTTTGATTTCatatgaatttcat
ttttctaaagttttaaaattgcttCTGCCATACAAAGCCGAAATTTCTAC
gataaatgaaattttgatctagaaaatTATTAAGTTTGTAATCAAAGATT
TTCTGCTAAAATTGCACAATGTTTTAGCATCCTAGCTTATCTTGCATGcc
taatttttatcaaaatctacATATAGATGTTATTACACAAACAAAGCATT
AAATTTGCctccaaaataagaaaatcaccTTTTTAAATAAGCTAACAAAT
CAACAAGGAATTGTTTGACCTACTTTTAGAAGGAATGGTTattaaaaatt
gagtaaaaatttttttctttatagccTCCATTTACTATCCCAATACCATC
GTCAAGTACTTCATTTGCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTCT
ACgataaatgaaattttgatctagaaaatTATTAAGTTTataatcaaaga
ttttcctGCTAAAATTGCACAATGTTTTAGCATCCTAGCTTATCTTGCAT
GcctaatttttatcaaaatctacATATAGATGTTATTACACAAACAAAGC
ATTAAATTTGCctccaaaataagaaaatcaccTTTTTAAATAAGCTAACA
AATCAACAAGGAATTGTTTGACCTACTTTTAGAAGGAATGGTTattaaaa
attgagtaaaaatttttttctttgtagcCTCCATTTACTATCCCAATACC
ATCGTCAAGTACTTCATTTGCCTCATCATCGACCTCGAGTGTGTCCacat
caacaagtgtcagcacataCAAACCAGTCACTACTTCTGTAcaatcacca
tcaccatctacAAGCAAACTAGCCCCATCGACATCAATCGCAAGCTCATC
AAGCCAAGCTACAAGCAGTACTCCATACGTCAGTACTTCTGTATTTACAC
CATCTTCGAGCTCTGTATTTACCTCAAGCAGTGCaagttcaagtgtgtca
acatcaacaagtgtcagcacataCAAACCAGTCACTACCTCTGTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043133XLOC_043133Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069199-exon-scaffold_496-1491911889:620967..621604TCONS_00069199-exon-scaffold_496-1491911889:620967..621604Clytia hemisphaericaexon
TCONS_00069199-exon-scaffold_496-1510915933:620967..621604TCONS_00069199-exon-scaffold_496-1510915933:620967..621604Clytia hemisphaericaexon
TCONS_00069199-exon-scaffold_496-1575043694:620967..621604TCONS_00069199-exon-scaffold_496-1575043694:620967..621604Clytia hemisphaericaexon
TCONS_00069199-exon-scaffold_496-1491911889:629392..629517TCONS_00069199-exon-scaffold_496-1491911889:629392..629517Clytia hemisphaericaexon
TCONS_00069199-exon-scaffold_496-1510915933:629392..629517TCONS_00069199-exon-scaffold_496-1510915933:629392..629517Clytia hemisphaericaexon
TCONS_00069199-exon-scaffold_496-1575043694:629392..629517TCONS_00069199-exon-scaffold_496-1575043694:629392..629517Clytia hemisphaericaexon
TCONS_00069199-exon-scaffold_496-1491911889:631344..631663TCONS_00069199-exon-scaffold_496-1491911889:631344..631663Clytia hemisphaericaexon
TCONS_00069199-exon-scaffold_496-1510915933:631344..631663TCONS_00069199-exon-scaffold_496-1510915933:631344..631663Clytia hemisphaericaexon
TCONS_00069199-exon-scaffold_496-1575043694:631344..631663TCONS_00069199-exon-scaffold_496-1575043694:631344..631663Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:620967..631663 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0608021	0	0	0	0.696289	2.46516	2.06893	9.98655	5.11473	20.1409	22.2936	1.19075	0.593251	0	0.169419	0.858041	0.934931	3.18169	10.408	6.21603	8.12807	1.12757	1.49871	0.632162	0.500949	0	0	0	0.0511312
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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