TCONS_00069201 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00069201
Unique Name	TCONS_00069201
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1192

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_496:629025..635734+

transcript sequence

>TCONS_00069201 ID=TCONS_00069201|Name=TCONS_00069201|organism=Clytia hemisphaerica|type=transcript|length=1192bp
TACAAACCAGTCACTACTTCTGTCCAATCACAATCAACCTCGATCACAAG
TTTAGCACCTTCAAGCTCGGGATTTTCTGAGcttccaaaatctttgatta
cACAAACCGTTGAAAGCTTTACGACGTCGGTAGTGGAAACATCTTCAGGA
GTTGTCTTCACGCCTTCCTCAGGAACAACATCACGCCCACCATTCccTCC
ATTTACTATCCCAATTCCATCGTCAAGTACTTCATTTGCCTCGTCATCGA
CCTCGAGTGTGTCCacatcaacaagtgtcagcacatacaaaccagtcact
acttctgtccaatcaccatcaccatctacAAGCANAACCAGTCACTACTT
CCGTccaatcaccatcaccatctacaagcaaaccagctccatcgACATCA
ATTGCAAGCTCATCAAGCCAAGCTACGAGCAGTACTCCATACGTTAGTTC
TTCTGTATCTACACCATCTTCGAGCTCAGTATTTACCTCGAGCAGTGTAA
GTTCAAGTGtatcaacatcaacaagtgtcagcacatacaaaccagtcact
acttctgtccaatcaccatcaccatctacaagcaaaccagctccatcgAC
ATCAATTGCAAGCTCATCAAGCCAAGCTACAAGCAGTACTCCATACGTTA
GTACTTCTGTATCTACACCATCTTCGAGCTCAGTATTTACCTCGAGCAGT
GCAAGTTCAAGTGtatcaacatcaacaagtgtcagcacatacaaaccagt
cactacttctgtccaatcaccgtcaccatctacaagcaaaccagctccat
cgACATCAATTGCAAGCTCATCAAGCCAAGCTACAAGCAGTACTCCATAC
GTTAGTACTTCTGTATCTACACCTTCATCGAGCTCAGCATTTACCTCAAG
CAGTGCaagttcaagtgtgtcaacatcaacaagtgtcagcacatacaaac
cggtcactacttctgtccaatcaccatcaccatctacAAGCAAGCCAGCT
CCATCGACATCGATTGCTAGCTCATCAAGCCAAGTAAGTTCAAGCACAAG
CCAAACAACTTACACTGAATCTACATATGCAAGCACACAATCTCAAGTTG
TGAGCACATCAAGCCCATATGTCAGTTCCTCGGTATCTACACCTTCATCG
AGCTCAGCATTTACCTCAAGCAGTGCAAGTTCAAGTGTGTNN

Run BLAST on NCBI

transcript from alignment at scaffold_496:629025..635734+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00069201 ID=TCONS_00069201|Name=TCONS_00069201|organism=Clytia hemisphaerica|type=transcript|length=6710bp|location=Sequence derived from alignment at scaffold_496:629025..635734+ (Clytia hemisphaerica)
TACAAACCAGTCACTACTTCTGTCCAATCACAATCAACCTCGATCACAAG
TTTAGCACCTTCAAGCTCGGTAGGTGTTCTTTGAACATTGGTTTAGAGGA
AAATGCTCTTACTATTgtttttagtttattttcaTAAGACAGACACAAAT
AATTAATATGAAAAAGAACTTTAAGTCAATTAGGCAATGACTTAATATTA
TAAAATCCACTGGCGAGGGGTAGGGTCTTTTTCTTTCAAGTTTGTTAGCA
AAAACGTTGTTTTTCAAATACTATTTGCCTCAAGTGCCATGATTGCTTTT
AAACGAAGGAAAGGTGTTCCGAAATTTGGTCTTCTAAATTACAATAATAA
TTACTTTTTTCTACCAGGGATTTTCTGAGcttccaaaatctttgattacA
CAAACCGTTGAAAGCTTTACGACGTCGGTAGTGGAAACATCTTCAGGAGT
TGTCTTCACGCCTTCCTCAGGAACAACATCACGCCCACCATTCGTAAGTA
GTGCTTATAAAGtttccattgaatatttcttTCATGAAACTATATATCTA
AGTACTTTCAACAGGGATACGTATCCCACCAGTCCCTTCTAACATTTCCA
ATCATGTTTATTAGTAGACTAGAAAATACAACCGTAGCAAAGCCTTCTTA
TCAGAATTTAGTTTTGAGGCTAATGGTAATACTTATCTATGCACTTGAAA
TCTTCGACCCAATAATAGTCTTTGATTTCatatgaatttcatttttctaa
agttttaaaattgcttCTGCCATACAAAGCCGAAATTTCTACgataaatg
aaattttgatctagaaaatTATTAAGTTTGTAATCAAAGATTTTCTGCTA
AAATTGCACAATGTTTTAGCATCCTAGCTTATCTTGCATGcctaattttt
atcaaaatctacATATAGATGTTATTACACAAACAAAGCATTAAATTTGC
ctccaaaataagaaaatcaccTTTTTAAATAAGCTAACAAATCAACAAGG
AATTGTTTGACCTACTTTTAGAAGGAATGGTTattaaaaattgagtaaaa
atttttttctttatagccTCCATTTACTATCCCAATACCATCGTCAAGTA
CTTCATTTGCCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTCTACgataaa
tgaaattttgatctagaaaatTATTAAGTTTataatcaaagattttcctG
CTAAAATTGCACAATGTTTTAGCATCCTAGCTTATCTTGCATGcctaatt
tttatcaaaatctacATATAGATGTTATTACACAAACAAAGCATTAAATT
TGCctccaaaataagaaaatcaccTTTTTAAATAAGCTAACAAATCAACA
AGGAATTGTTTGACCTACTTTTAGAAGGAATGGTTattaaaaattgagta
aaaatttttttctttgtagcCTCCATTTACTATCCCAATACCATCGTCAA
GTACTTCATTTGCCTCATCATCGACCTCGAGTGTGTCCacatcaacaagt
gtcagcacataCAAACCAGTCACTACTTCTGTAcaatcaccatcaccatc
tacAAGCAAACTAGCCCCATCGACATCAATCGCAAGCTCATCAAGCCAAG
CTACAAGCAGTACTCCATACGTCAGTACTTCTGTATTTACACCATCTTCG
AGCTCTGTATTTACCTCAAGCAGTGCaagttcaagtgtgtcaacatcaac
aagtgtcagcacataCAAACCAGTCACTACCTCTGTCCANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTTACCTCAAGCAGTGCaagttcaagtgtg
tcaacatcaacaagtgtcagcacatacaaaccagtcactacttctgtcca
atcaccatcatcatctacaagcaaaccagctccatcgACATCGATAGCTA
GCTCATCAAGCCAAGTAAGCTCAAGTACAAGCCAAACAACTTACACTGAA
TCTACATATGCAAGCACTCAATCTCAAGTTGTGAGCACATCAAGCCCATA
TGTCAGTTCCTCGGTATCTACACCTTCATCGAGCTCAGCATTTACCTCAA
GCAGTGCaagttcaagtgtgtcaacatcaacaagtgtcagTACATACAAA
CCAGTTACTACTTCAGTttcatcaccatcaccatctacaagcaaaccagc
tccatcgACATCGATTGCTAGCTCATCAAGTCAAGCTACAAGCAGTACTC
CATATGTTAGTACTTCTGTATCTACACCATCTTCAAGCTCAGTATTCACC
TCAAGCAGTGCaagttcaagtgtgtcaacatcaacaagtgtcagcaNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
atttcatttttctaaagttttaaaattgcttCTGCCATACAAAGCCGAAA
TTTCTACgataaatgaaattttgatctagaaaatTATTAACTTTATAATC
AAAGAGTTTCCTGCTAAAATTGCACAATGTTTTAGCATCCTAGCTTATCT
TGCATGcctaatttttatcaaaatctacATATAGATGTTATTACACAAAC
AAAGCATTAAATTTGCctccaaaataagaaaatcaccTTTTTAAATAAGC
TAACAAATCAACAAGGAATTGTTTGACCTACTTTTAGAAGGAATGGTTat
taaaaattgagtaaaaatttttttctttatagccTCCATTTACTATCCCA
ATACCATCGTCAAGTACTTCATTTGCCTCNCTAACAAATCAACAAGGAAT
TGTTTGACCTACTTTTAGAAGGAATGGTTattaaaaattgagtaaaaatt
tttttctttatagccTCCATTTACTATCCCAATTCCATCGTCAAGTACTT
CATTTGCCTCGTCATCGACCTCGAGTGTGTCCacatcaacaagtgtcagc
acatacaaaccagtcactacttctgtccaatcaccatcaccatctacAAG
CANAACCAGTCACTACTTCCGTccaatcaccatcaccatctacaagcaaa
ccagctccatcgACATCAATTGCAAGCTCATCAAGCCAAGCTACGAGCAG
TACTCCATACGTTAGTTCTTCTGTATCTACACCATCTTCGAGCTCAGTAT
TTACCTCGAGCAGTGTAAGTTCAAGTGtatcaacatcaacaagtgtcagc
acatacaaaccagtcactacttctgtccaatcaccatcaccatctacaag
caaaccagctccatcgACATCAATTGCAAGCTCATCAAGCCAAGCTACAA
GCAGTACTCCATACGTTAGTACTTCTGTATCTACACCATCTTCGAGCTCA
GTATTTACCTCGAGCAGTGCAAGTTCAAGTGtatcaacatcaacaagtgt
cagcacatacaaaccagtcactacttctgtccaatcaccgtcaccatcta
caagcaaaccagctccatcgACATCAATTGCAAGCTCATCAAGCCAAGCT
ACAAGCAGTACTCCATACGTTAGTACTTCTGTATCTACACCTTCATCGAG
CTCAGCATTTACCTCAAGCAGTGCaagttcaagtgtgtcaacatcaacaa
gtgtcagcacatacaaaccggtcactacttctgtccaatcaccatcacca
tctacAAGCAAGCCAGCTCCATCGACATCGATTGCTAGCTCATCAAGCCA
AGTAAGTTCAAGCACAAGCCAAACAACTTACACTGAATCTACATATGCAA
GCACACAATCTCAAGTTGTGAGCACATCAAGCCCATATGTCAGTTCCTCG
GTATCTACACCTTCATCGAGCTCAGCATTTACCTCAAGCAGTGCAAGTTC
AAGTGTGTNN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043133	XLOC_043133	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00069201-exon-scaffold_496-1491911889:629025..629093	TCONS_00069201-exon-scaffold_496-1491911889:629025..629093	Clytia hemisphaerica	exon
TCONS_00069201-exon-scaffold_496-1510915933:629025..629093	TCONS_00069201-exon-scaffold_496-1510915933:629025..629093	Clytia hemisphaerica	exon
TCONS_00069201-exon-scaffold_496-1575043694:629025..629093	TCONS_00069201-exon-scaffold_496-1575043694:629025..629093	Clytia hemisphaerica	exon
TCONS_00069201-exon-scaffold_496-1491911889:629392..629517	TCONS_00069201-exon-scaffold_496-1491911889:629392..629517	Clytia hemisphaerica	exon
TCONS_00069201-exon-scaffold_496-1510915933:629392..629517	TCONS_00069201-exon-scaffold_496-1510915933:629392..629517	Clytia hemisphaerica	exon
TCONS_00069201-exon-scaffold_496-1575043694:629392..629517	TCONS_00069201-exon-scaffold_496-1575043694:629392..629517	Clytia hemisphaerica	exon
TCONS_00069201-exon-scaffold_496-1491911889:634738..635734	TCONS_00069201-exon-scaffold_496-1491911889:634738..635734	Clytia hemisphaerica	exon
TCONS_00069201-exon-scaffold_496-1510915933:634738..635734	TCONS_00069201-exon-scaffold_496-1510915933:634738..635734	Clytia hemisphaerica	exon
TCONS_00069201-exon-scaffold_496-1575043694:634738..635734	TCONS_00069201-exon-scaffold_496-1575043694:634738..635734	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_496	supercontig	scaffold_496:629025..635734 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0179375	0	0	0	0	3.4211	10.7744	17.8624	26.8293	21.0195	1.38483	2.31227	0.245157	0.254806	0.62507	0.278049	2.53737	2.64315	0.616322	0.848666	0	0.508652	1.39387	0.076944	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00069201 vs. Swiss-Prot (Human)

BLAST of TCONS_00069201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00069201 (transcript) - C. hemisphaerica