TCONS_00069215 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069215
Unique NameTCONS_00069215
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1800

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069215 ID=TCONS_00069215|Name=TCONS_00069215|organism=Clytia hemisphaerica|type=transcript|length=1800bp
caaaaatattaaattccCGTCAATCAAACTAAAATAATCAGATCCACGAA
TTCTCTGAACGAATGTTTTTGGTATTACTGCTAACTTGGAACATGTATTA
ATGACTTTTTAGAAACTCGCAAATTTCAGTCGCTGGTTTTCCTCAAAACG
TTCGAGGTGCCTGAATCCAgtcaaaacctttaaactttTAGGAAGCTTCC
TGTCGGAAAAACTACTTCATATATGTGAAAAGAAGATGGAGCCTACCATT
CATGCCAAGTCACCCCTTGCAAGCCCTGACCCATTCAAAGTGTACACAAA
ACGGAGTGTGAAAATTGACTACAAGAAAAATCCAACAATGTCAAAATGTC
AAGGACAAGCAAGGATATTTCAAAGACGCTCAAGTGAGAAGCCAAAAGTT
CCAGTGTTGCAACCTTTAAAGATGATGATGTTCGATACAGACCCTCTGTC
TTTGTTGACAGTGTCACAAAGTtcaggcattgactctccagaACTTGTTT
CTACTCCAAAGGATCAAAATAAATCACAATCAAATATACCTATTGAAGCT
TTAAATAGCACAGATCCCCTGAATTTATTTCCAGAAGATGATAATTCAAT
CACCAGGTCAGCTCGCAAACGTAAGAAAAAACGTCATCGAACATCGTCAA
TAGTTTGTGGTGAAGACGAGGAATCATACAATACTTCAGAATTAATTTCC
CCAACTGAAGAAACCCCATCAAAGCAACTTAAATATATCCAAGACATTCG
TTCTCCTATAGTCGAAAAGAATAATGAAAAGACAAAAGTATCTTTAAAAA
GATCCAAATTTAAGTATGGGAATTTCATTAGTTACAATAACACCAATGTC
GAATCAAGTTCAGTTGACAATATTAAACCTTGGCAAATAAATAGGGACCA
ACGTTtacataatttcaaaaaagaatggtTTTCAGGGAAGAAGTGTTTAT
CAATCGGATGCGGGGATGGTCAAATTGTGTATTGGATTACCAAGAATTGC
CATCCTTTGTTGATCACTGGCTTAGACATAGATGAAGGATTGATAAATAT
TGCTAAAAATAGGAGTAGAGAGTTTCAAGATAATCATATAACAGACAAAT
TAGATTTTCCGGTATCCATTCCAATGAGTTGTGGTCCTATTTCTACTGGC
TTTAAAATCACACCTAGAAATATAACCAGGAATAATAGTACCTCATTCAT
CCATGGTGATGATCCATGAACCATCTTGACACGCACCTTCATTTCACAAG
ATGCAATTCTGGAAGGTGGTGACTCCTACAAAAATGGTTTCTTTGGCATG
GCGATTATGTACCAGCATCTCAACAAAGTTTGGAATCCGTTCAACAGGAA
TATGAGACCATTGTCTTCTTGAGTACCAGTAAATGGATCCATCTCAATTA
TGGCGATGAAGGACTTAAACGCACTTTCAAGAAGATTTTCTTTCAACTTC
GTCCAGGTGGTCGGTTGTTGTTTGAACCACATACTATTAGCTGTTACAAA
AAGTCAAGAAATCTAACGACTGGTATCCGGCAGACATACGATAAGATGCG
ATTTCAACCGTCCGACTTCATCACTTATTTACTTTCATCTGAAGTTGGCT
TCAAACAATCTGTTTGCTTGGCACATACACGAAAACGAAAAACAAataac
CTTCGACCGTTGTACTTACTTACAAAAGGTGATGGGTGAAGCACAAATTT
TAGCatacttaattttttatttcttgtacATTATATTTCAACCTGTACAT
AGTAACCAAAAACTAAATCATCAAACATACCTAAGTCCTATCAGATCATT
Run BLAST on NCBI

transcript from alignment at scaffold_496:706884..711245+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069215 ID=TCONS_00069215|Name=TCONS_00069215|organism=Clytia hemisphaerica|type=transcript|length=4362bp|location=Sequence derived from alignment at scaffold_496:706884..711245+ (Clytia hemisphaerica)
caaaaatattaaattccCGTCAATCAAACTAAAATAATCAGATCCACGAA
TTCTCTGAACGAATGTTTTTGGTATTACTGCTAACTTGGAACATGTATTA
ATGACTTTTTAGAAACTCGCAAATTTCAGTCGCTGGTTTTCCTCAAAACG
TTCGAGGTGCCTGAATCCAgtcaaaacctttaaactttTAGGAAGCTTCC
TGTCGGAAAAACTACTTCATATATGTGAAAAGAAGGTATGTAACATTATG
TTTAACTCAAAGAAGTGTGGCTTGTATCATTAGGGAGATTTAgtgatttt
tgtacgatttcTGGGGGCTCTGGGCGTTGCAGTTGTTTTCAGTTTTAATA
TGACGACGTCATGGTCTGAGATGGAGAGACCTAATTCGTTCTCCATCGTG
GCAAAATTGTGAGAACCACAATTTTGATGTTGATTGTTCATTTACATTTA
CCTAGTACCCCTCTAGGCCTCAAGAGTTCATCGAAAAGCATCCCTTTACA
GctgcttttgttttgttttttagttATTGTAAGAGTTTGTAAGAAAAAGG
TCTAAAAAAGAGTGGGCGTTGGAACCTACCTGTGGACCCTGGCTAGAGGG
GAGAGGAGGGCGAGCAAATTGGCTGAAAGGTGGGTATGTACAGCACTCAC
GCAAGGGGGGTTTCAGGGGATACTCGATTCCGCAATTCTGctaatttttt
ctccaatttccgtcaaactgTTTAAAATTGAACCTAAATTCTGCCACCAA
AAATTCCTTTAAAATTCGAGATTATTGTCAAAAATTCCgcgaattttgaa
tattttttgccaattccaaaattctgcaaaagcTCCACCAACCATGAACC
CCCCGGCACACAAGTCAAAGTGTGCTCCTGTCTCTGGCAGATTTCCGTCT
ACGTGAAGTAAATAAAGATTTTGTTTCTTTTAGGGAGCCGtacatattca
tttgacaacgcatagcgtcaaattgacgttacgagggggtggggggtttt
caaaagttgggtttgacgttataagaaatcaaaggtatacctttttgtCA
AAATCGCGAATATTTGTTTTACCACCAACCACACTATACTTTTTAAGTTG
tcgaaaatatatttgtgtatgaattacatgaaaatttgcttgcataatcc
cattggttcGCGCTATGATGTCATTACgtatcatattttcattgtttgcg
caATCAAGCGACGGCACGGACCTAGCGCTAAGTGGagcttttgatttctt
tctaaataaaggtcattagttaaaagaacacatacacgCACGTCTACAAC
CAAGTACGGACTTTGCGatgggaaaactttgatgaaaaaatggcaacaac
ttttggtatacaaactttcaaaagtttcaaactTGCCAAAATTTAAATAT
TGTTAAATTATTATTGTTTAatatttcatttatcagggttgttttgtacc
gaaaatgttttccaaaaaatttccaaaaaaaagaatttttttttaaccta
CCACCCAGTGTTTAATAGTTAtgtattttaaaatcttttctaGATGGAGC
CTACCATTCATGCCAAGTCACCCCTTGCAAGCCCTGACCCATTCAAAGTG
TACACAAAACGGAGTGTGAAAATTGACTACAAGAAAAATCCAACAATGTC
AAAATGTCAAGGTAGGCTATAGCGATTTCTTTAATTCGCCCATTGTGATG
TATTTCCTTTCAGCAATGATATTTGTTTTTCAACAAGGTATTCTAAAGCC
TGTGGTCAAGTAAAACATACAATATAGTCCATAATTATTTGCTCACATTC
ACTAAGTTCTCTTACACAGCAAAGCAATTTAAATTATATTAAAATTGTAT
TTAACTTCATGCCTTTATTCATTTAGGACAAGCAAGGATATTTCAAAGAC
GCTCAAGTGAGAAGCCAAAAGTTCCAGTGTTGCAACCTTTAAAGATGATG
ATGTTCGATACAGACCCTCTGTCTTTGTTGACAGTGTCACAAAGTtcagg
cattgactctccagaACTTGTTTCTACTCCAAAGGATCAAAATAAATCAC
AATCAAATATACCTATTGAAGCTTTAAATAGCACAGATCCCCTGAATTTA
TTTCCAGAAGATGATAATTCAATCACCAGGTCAGCTCGCAAACGTAAGAA
AAAACGTCATCGAACATCGTCAATAGTTTGTGGTGAAGACGAGGAATCAT
ACAATACTTCAGAATTAATTTCCCCAACTGAAGAAACCCCATCAAAGCAA
CTTAAATATATCCAAGACATTCGTTCTCCTATAGTCGAAAAGAATAATGA
AAAGACAAAAGTATCTTTAAAAAGATCCAAATTTAAGTATGGGAATTTCA
TTAGTTACAATAACACCAATGTCGAATCAAGTTCAGTTGACAATATTAAA
CCTTGGCAAATAAATAGGGACCAACGTTtacataatttcaaaaaagaatg
gtTTTCAGGGAAGAAGTGTTTATCAATCGGATGCGGGGATGGTCAAATTG
TGTATTGGATTACCAAGAATTGCCATCCTTTGTTGATCACTGGCTTAGAC
ATAGATGAAGGATTGATAAATATTGCTAAAAATAGGAGTAGAGAGTTTCA
AGATAATCATATAACAGACAAATTAGATTTTCCGGTATCCATTCCAATGA
GTTGTGGTCCTATTTCTACTGGCTTTAAAATCACACCTAGAAATATAACC
AGGAATAATAGTACCTCATTCATCCATGTAAGTCTTTCAATATGTTAATT
TACTTGTACTGTGATTAAAAACGTCTTTATATTCTCTTCGGCTAAGTGAA
agctttgatttgatttttttgagctCTATATTTTGTTGGTAACATATTTA
TTTAGGGTGATGATCCATGAACCATCTTGACACGCACCTTCATTTCACAA
GATGCAATTCTGGAAGGTGGTGACTCCTACAAAAATGGTTTCTTTGGCAT
GTATGGAAGAGAACAAAATATCCCCCATTTTCTGATCCTCTTCGTGCAAA
GTGTCTCTTTCTATCATTACATCGCCATCATTTTACGATAAAGGTTAGAC
CCAAAAGAGATGCCTTTTGAATTGAGATTCAAGCCTGCACTAAATGGCAC
TAGAAANAAAAGGTTAGACCCAAAGGAGATGCCTTTTGAATTGAGATTCA
AGCCTGCACTAAATGGCACTAGAAAAGATTAGTTTGAAGGGATATTGCCA
TAATCATGTAACTGTCTTGTGGTATTTGCACCTAAAGATTTGGATGACAA
ATTTGTGCTTTTAATACTAATGAATTGTTCAAACTTTATTTCTCAGGGCG
ATTATGTACCAGCATCTCAACAAAGTTTGGAATCCGTTCAACAGGAATAT
GAGACCATTGTCTTCTTGAGTACCAGTAAATGGATCCATCTCAATTATGG
CGATGAAGGACTTAAACGCACTTTCAAGAAGATTTTCTTTCAACTTCGTC
CAGGTGGTCGGTTGTTGTTTGAACCACATACTATTAGCTGTTACAAAAAG
TCAAGAAATCTAACGGTAATTGTCTTTTTAAATGGAACTGATTTATAGTG
AGTCCCACctaaattctgtcatttttaatGCATGTACGCTGTAGCCAAAT
GCATTGGTTTTATCCGTTTTGCTCTAATCTCTAGCAAGGATCCATTTTCT
TTTGACCTGATTGCTTGCAGCGAGTCTAAACCAACACGCCCTTTTTTGGT
TACGAAATTTATGCTATCGTAAATCTTTTGCTGAAAAACGTCATATAATG
AAAGTCTCAGAACCCTTTGTCGTTTACTGTATGTAAAAGTATGATACGAC
TCTTAACCTAACCGATGTAAATCATAtaatgtctctttttattgGAATTT
AGACTGGTATCCGGCAGACATACGATAAGATGCGATTTCAACCGTCCGAC
TTCATCACTTATTTACTTTCATCTGAAGTTGGCTTCAAACAATCTGTTTG
CTTGGCACATACACGAAAACGAAAAACAAGTAAGAAATTCTCCTCTAAAG
ACTTCGTAATGGCTTCCTTCTTCTTTTATCTTTGTTGGATTGTTTCCACG
ATAAAAAGTTgtgttgatttcatttttttttcgcaCTGAAGTCTCTATAT
CATTTTGAGCGGAAGCTCTTAACTAATCTCTAGTAAAGCGAACGTAATTA
AAATTTCTAGTTCGATTATTTTATACTTATACATTATtacttctgttttt
ttttcagataacCTTCGACCGTTGTACTTACTTACAAAAGGTGATGGGTG
AAGCACAAATTTTAGCatacttaattttttatttcttgtacATTATATTT
CAACCTGTACATAGTAACCAAAAACTAAATCATCAAACATACCTAAGTCC
TATCAGATCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043136XLOC_043136Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069215-exon-scaffold_496-1491911889:706884..707118TCONS_00069215-exon-scaffold_496-1491911889:706884..707118Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1510915933:706884..707118TCONS_00069215-exon-scaffold_496-1510915933:706884..707118Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1575043694:706884..707118TCONS_00069215-exon-scaffold_496-1575043694:706884..707118Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1491911889:708427..708544TCONS_00069215-exon-scaffold_496-1491911889:708427..708544Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1510915933:708427..708544TCONS_00069215-exon-scaffold_496-1510915933:708427..708544Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1575043694:708427..708544TCONS_00069215-exon-scaffold_496-1575043694:708427..708544Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1491911889:708760..709610TCONS_00069215-exon-scaffold_496-1491911889:708760..709610Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1510915933:708760..709610TCONS_00069215-exon-scaffold_496-1510915933:708760..709610Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1575043694:708760..709610TCONS_00069215-exon-scaffold_496-1575043694:708760..709610Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1491911889:709739..709833TCONS_00069215-exon-scaffold_496-1491911889:709739..709833Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1510915933:709739..709833TCONS_00069215-exon-scaffold_496-1510915933:709739..709833Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1575043694:709739..709833TCONS_00069215-exon-scaffold_496-1575043694:709739..709833Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1491911889:710180..710398TCONS_00069215-exon-scaffold_496-1491911889:710180..710398Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1510915933:710180..710398TCONS_00069215-exon-scaffold_496-1510915933:710180..710398Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1575043694:710180..710398TCONS_00069215-exon-scaffold_496-1575043694:710180..710398Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1491911889:710736..710862TCONS_00069215-exon-scaffold_496-1491911889:710736..710862Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1510915933:710736..710862TCONS_00069215-exon-scaffold_496-1510915933:710736..710862Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1575043694:710736..710862TCONS_00069215-exon-scaffold_496-1575043694:710736..710862Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1491911889:711091..711245TCONS_00069215-exon-scaffold_496-1491911889:711091..711245Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1510915933:711091..711245TCONS_00069215-exon-scaffold_496-1510915933:711091..711245Clytia hemisphaericaexon
TCONS_00069215-exon-scaffold_496-1575043694:711091..711245TCONS_00069215-exon-scaffold_496-1575043694:711091..711245Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:706884..711245 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.7378	9.02571	2.64355	4.75288	6.60216	7.29441	3.20567	4.17064	5.1522	6.05581	0.018742	8.91975	2.18704	3.00543	2.13943	2.34243	4.01382	2.5097	1.85574	3.2443	4.82024	5.19262	17.2954	14.1752	2.47325	3.1848	8.28308	1.40518	17.641	11.9795
Blast
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BLAST of TCONS_00069215 vs. Swiss-Prot (Human)
Match: MEPCE (7SK snRNA methylphosphate capping enzyme OS=Homo sapiens GN=MEPCE PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.853e-23
Identity = 51/126 (40.48%), Postives = 74/126 (58.73%), Query Frame = 1 
Query: 1300 GDYVPASQQSLESVQQEYETIVFLSTSKWIHLNYGDEGLKRTFKKIFFQLRPGGRLLFEPHTISCYKKSRNLTTGIRQTYDKMRFQPSDFITYLLSSEVGFKQSVCLAHTRKRKTNNLRPLYLLTK 1677
            G+YV      +E+   EY+ ++ LS +KW+HLN+GDEGLKR F++I+  LRPGG L+ EP   S Y K + LT  I + Y +++ +P  F +YL S +VGF     +A          RP+YL  K
Sbjct:  558 GNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHK 683
The following BLAST results are available for this feature:
BLAST of TCONS_00069215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEPCE9.853e-2340.487SK snRNA methylphosphate capping enzyme OS=Homo s... [more]
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