TCONS_00069228 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069228
Unique NameTCONS_00069228
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069228 ID=TCONS_00069228|Name=TCONS_00069228|organism=Clytia hemisphaerica|type=transcript|length=792bp
ggggatgcgtgcagcctacagTCTGCTGGAGTAAATCCATCCAGagaatt
ttactttcaaatattatatatctctctctctctcttcagTACGATGGATG
TCATATAGCAACCTCAATGATCGGACAAAAGTATTGTTGTCCCAGGGGAA
AATTTGGTGACAAGTGCCAGTATATAGCGACGTGTGCGAACAAATACCAT
GGCATTTGTCACAATTCTGATGGAAACGTCCAAACTTCCGGAAAACAATT
TTTGGGCAATTTCAAATCCGCTTATAAGTGTTTTCAACAATGCAAAAAGC
TTGTTATCAAAGATGCTTTGAAATGGACTGCTTGTGAAAGTTACGAAAAT
TTGAATGGTCATCAATGCAACATACTTTCTAGTGACGTCATGTTGGGCAA
ACCTACCTCTCTGTATCGTGCGTTTTATTCAACATGTTGGACGTTCAAAC
AACAATGCAGTGACCCCATTAATCAAAGTAAGGCTTTTTTGGATCATTTC
CATGTGCAAAAGTCCAGGGGGAAGTCAGTCAAATTGACCGACGCGTAtga
tgtgcggcggttaagggtatgtttttcaaaatagcaGAAATgaactgtaa
gggtggacttttgataaatgcactgtatgggtggaaatctcagcaaatct
aggaaaaattgcaaatttttgctcgaaaatcttgattttttttgctctag
aagattttaaaatttgaaaaaatgcactgtaagggtatgaatttcaccga
tttttttctgcactgtaagggtgcgattctaaaagccaattt
Run BLAST on NCBI

transcript from alignment at scaffold_496:122580..134944-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069228 ID=TCONS_00069228|Name=TCONS_00069228|organism=Clytia hemisphaerica|type=transcript|length=12365bp|location=Sequence derived from alignment at scaffold_496:122580..134944- (Clytia hemisphaerica)
GGGGATGCGTGCAGCCTACAGTCTGCTGGAGTAAATCCATCCAGAGAATT
TTACTTTCAAATATTATATATCTCTCTCTCTCTCTTCAGTACGATGGATG
TCATATAGCAACCTCAATGATCGGACAAAAGTATTGTTGTCCCAGGGGAA
AATTTGGTGACAAGTGCCAGTATATAGGTGAAATATCTGTTTGTTTTTTG
TGACAAAATTCGCACGTAATCAAAGTTTGTATTGTTAGTCAAAGGTTTTG
ATATGTTATGCCAAGTACTCAAGTCTGTTCCTGGCAATGATGGTTACAGA
TGACGGCCTTTAAAATTATTTAATAATGGAGTGAGCAGAATTCTTTTTTG
CCATTATTCCTTTTTGGGCCTACCCCGGTGGAGGTCCTATAATTTAACCG
TTGTATGTTTATTCGTTCGTTCGTTAGTTACCAGCTTTTCTCGATATTGG
CTCATTAGTGTTTTCTGATTTTTGTACAAAGATGCATAACGGCTAAAAAC
GGGTTTTTCTGACTAATTGAAAAATTTGATCATTAATTTTTTCTGATTTT
TTGCATGAAAGTAGGGTACCATCATAGGTAAAAGATGGTCAAGCAGATTT
TTGGAGAAAATTTTGTTGGCTAAAAAAACGCATGTTTATCTATAAGAATT
ACAATTAATAAGTGTACAGAGGCGATTCTATAGCCTCTGTACTACGCCCA
GAAACCACCTTCCACGCCCGTAACGCCCTCGTTACGGTTGAATAAACTTG
AAAGTGTTTTACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNTTGGACCACGTGTGACCATAGCTTAGCGCCCGAGCGTGGAACAGTCA
CGTTGGTGGATAATAGAAATTTAATGAGATATATAGGAATCATGATGGAG
GTTTAGTAGATATACGTATTTAGGTTTTCGAGAAATTTCGGAGAAAATCG
AATTGCAAATTTGCAGAGAAAATTAGTTGTACAGAATATGCGCAGTTCTG
TACATGAAAATAGAAACACTGTTTGGTATGATAAACAAGCTAAAAATAGA
ATTGATGAAAGTTGAACAAGATTAGCTCATGACCAAACAGAATAACAGAA
GAGTGTTGAGATTGTTTCACAGCGATCCCTTTAATTTTTGTTTATACACA
GGCAAAGTTACTGAGTTTGTTGGGCCAACCATGAAGTTTTTTGTGCAACA
AGCGAATGATTGATTGTGAGTGAACAAAAATTAAAGTGAATGCTGAATAA
GAGTATTTGAAATTAGTGGAGTAGAATGACCTGAATCGACCTTCTTTGCG
AAGTAGATTTCTTCTGGATAGGATTCAACTGAAATTTTCGTTGTTTTTTA
TTGGTTATTTCGTTGAAATTTTTATTTGGAAAATTTTTTTTTACCTGGAG
TTATTAGTTGTTGTTTTTTTTGGTGTTGACGAAATCTGATTGGTGGAATC
GATACCAGCCCGTCAATCGGACACAGGGACTACACGGAAAAGAANAAAAA
CCCAAATTTACACACCTCTTTAACTCATAGCCACTGCGATTATAATAGGT
TTTCCTGTCGGCCTGAGGAGAAGCCAATGTCCATCATTATCTGGGGGAAT
GTCACCCATGATAGGGAAGCATTTCATAGAATGGGTCGGTACAAAGCATA
CATTATAGGGGACTATGCCATCATCCCCACTCTCAAGATAGGTGGCGCTA
TTCAACACGCTGTAAAGGAAAAATATTACCAATTGGACAACGGGCTAATC
CTTGAAAAAGCCACTAGGACGTATGAGAGCAACGCAAAAAGTAGGGGTGG
TAGAGGGGCGCGAAGTTCGGATAAGGCGCATGAGGGCCTAATAGTGACTG
AGGATGGGAACGGCAAAATCATGTGCAGTAGGGCATATGAACCGACTTTT
ACTTTTCCGTGTCCTATTAAAATCTTAACAAAAATTGAAAAAGAGAAACG
TGAAACCGAGGAATTTGAAAGAGTGGCAGAGGAATACGCCAAGAAAAGCC
GGGCCGATCATCAGTCACTGTTGGAAGCTCATTTAGCCGCAACGGTAGAT
TTAACATTTTCCCACTTCAGGGCAATATGGCATCAGATATGCCGAGTAAA
CAAACAGTTAAAGAAAATAAAGAATTGGGCAGTCAGGAATTTCCCTTCAT
CCACCCAGAGTTTGATGTCGGACAGTTCAGGGTTGGTGATGACCAGCATC
GGTGATGCGGTAATGACATATAAGTGCAAAAGGGTTAAGTCTTACATGGT
GCACTGGGACAGAAAAATCAAAGGAAAATGCTTTCAGCACTTTCCTGTCT
ACCTACGAAATGAGAATAAAACCGTCTTCCTCAGGGTGGAGGATCGGAAT
CTCCTACCGAAATCACGACAAATAAATTGCACAAAAAGGGAAAAGCACAC
AGTTGTGATTTCTAAAAGTAAAAGGGTATACCACATTGACCATAAAGGGA
AAGTAGATATATTAAGGTCAAAATTGAGAGACCGAATTCGATTCCCCGAT
ATGTTGAACCCTCCCAGAGGATTCAACACAAAGATCGTCTTAGAGAACCC
GGTTATACTAGATCAGCCTAGTCTACTACAAATGATGGCAGAAAGTGAAT
TTACACTTGGAGAATTAGTTAAACTTCACCAAGGTGCGACCAAGTCAGGG
TCAATAATTGAGGGAATCGGATTGGGCCTCGCAAGCGTCCTAGAAGCTGC
AGGTAATGCAGGGGACAAGGTAATATCTAGCTTAGGGACGGCATTGAAGG
ATACCTTCAATGGCGCCGGAAATGGAGGAGCAACCCTTGTCAAGGCAATA
GGCGAGGGTACAGCAGATGTAATAGACAGTACAGGTACAGCGGTCAAGAA
TTCCTTAACGGGTGTCTCCTACGTTTTTAAGGAGATATTCGGGGGTATTC
CGGGTCTGCTCATCTGGGTCGTCTTGCTGCCATTGGGGGGTTACATAATC
TACCTAAGGGCCACGGGACAACTTGGAAACTGCGTTTGTGCAGGGTGTAG
ACAGGGAGTGGATCTAACACCGGAGAAGAAAACAGAAGCAGAAGTCCCTG
AGAGGCCAGATTCCCCGATGACACTAGAAAAGAGGATGGCTGAACCTTTC
CCAATGACTGAACCTTTCCCAATGGATGAACCATTCCCAATATATGCGAC
CATGAGCGGGCCCCCAAAAGAAGCGACCGTAGAAACAACGGTCTTAAAAA
GAAATAGGGACCACATAAAACGCAGGCGACAAATAGATCACAGACGTCTT
AACAAGGCGATCACGTACCTCGACGCCCAGACTCTTTTCACCGGAAAAGA
TACCTAGGTTTGCATTAAAATATTTAGTAATTTTTCTACCTTTCATAATA
CATTTTTAAATCATACATAAAATACGAAACAAACAAGACGTCTACAACAA
ACCAGTTTATGGTAGTAGAATAGCAACCAAACACTTAAAACACCCCGAGT
AGATTAGCACACTGGTGGGTGTTGATTAAGAAATTAGTGACCCCTAGAAA
GGTCAATTGGAGAGCGGTCTATGTCGAAAATTAAGGCCAGAAATTCTCAT
CGCGACGAAAATACAACTGTATTTTGTATACTATCAAATCGAAGAAACGT
TTTTTTTCTATCATAATGGCACGACAAGGAGCAGTTTGGGAAGAGGTTTG
TCCGTTCTTGGGAGGAAACGATTTTTCAACTCTGTTTTCGAGTCCCGCTG
GTTTAACAAGATTAATGGCTACATTCCGAAATAGAGTCCCACAGGACAAC
AGCGCTTGGGCCCCCGGGGGAGTGGAAAACAAAATGTTTGAATTAACACT
AAAACAACTTTTTTCAGTATCATATTTACAGCTCGTCAACGAGCTACTGC
TTCCTCTTTTAGCAAATAAGATAGGAGTCACGGAAGCAGACGCAACGGTG
GCAATCAATAGACTATGGTTTGAGAGGGTTGAGGCAGCAGTTGGTCTAGG
TCAAATTTACGATGAAAGACTGTCCTCAACCCGCTTCCAAGGATATTTGG
AGTCTGCGAAGCCTCCAATTATGCGTTCCAGAGGAGAGAAACGCTCGTAC
AGAAAGATCCGTAAGTATGTCCGCCGAGGATACGTCCGGAACCCCAAACG
AAAGACGAGGAATTCAGGAGTAAGTGATTAAATTTTATCTGATTTTTGTA
TGCGAACCTTTCGGAAGAAACTAAACAACAATTTCAATTTTGGTTATAAT
TTTATTAGTGTAAACAAGAAAAAAAGAAAAACATTAGTCTTCGCCTTCGG
TTCACCAGGTGCCTGAAAAAAAATGAAGAAAAAAGACAGCATTAGTAAAT
ACAGAACAATCATTGTCTATGAATGTATTAATAATCACAATTACTTGCAG
TTTTCGAAGCAGAAAGGTAGACCTACAGAAGGGACACAGAGGTGTAAGTA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNAAATACGTACAGTCTCCCCTTCTCTGTTTGATGTCTGGACTAGTCCT
CCACCCGTTAATAATGTGGTGTCGACTTAGGCCTGGGCCGGCATCGCATT
ATTACATAAGCATACATCAATGTTATTAGTCAAATTACTCAATTTTTTTT
ATGAGACAGATGTTTTTTTGCTCATGAGGGCTTACGCTTAAAGAATATGT
GTGTTAAGACATGAAATTTTGGTTGTTTGGCGTGTTTTTATATAGAAAAA
CTGACCAAATTCGAAATTTTTTTTTAAGCACATTACCAATTACTTAGGTA
TTAGCTTTTCTCGAGATTGGCTCTTTCATTCTTTATGATTTTTTGCACAA
AGATGCATAATTATAAACCCTCGAATGTCACGGAGCTCGATTTTCGAAAG
AAAAAAATTTGGGGGCAAATTTGGGCCAAAAACGGCTAAAAACGGGTTTT
TTGGACTTTGTGAACTATTGGATCATTGTTATTTTCTGAATTTTTGCATG
AAAGGAGGTAAAAAGATGGCTTTAAATAGATTTTTGTAAAAAAATAATTT
TTCAGCTCAAAAAACGCATCTATATCATAAGAATCACTATTAATAAGCAT
ATACATCAATGTTCTTAAAATAAGTGCCGTAGCAACTGGGGGGGGAGCAA
GGGGAGGCTATGCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCCCCCCCCCCCCCCAATATGAAAATGCTTCCTACGGCACTGTAAAATT
ACTGAATTTTTTTTTATGAGATATGTTTTTTTGCTCACAAAGTCTTGAAT
ATGAAAGAATATTTCAAGAGCATGAAAATTTGGTTTCTGAACGTTTTTTT
TTATAAGAAACAAACGACTAATTTTAATAGATCGTCACTATTTGTGTTCT
GAATGATATCAATTATATATGTGTTAAATGTATAACCAGGTAGGTCCATA
AAAGTATCACTTGTTATGACAATGATTGCTCTCCATTTCAATTTCAAATT
TCTCTCGAATGTGCTTTTCCAGAAAAGAATTTAATATAGGGGTGGAGGAT
ATAACAATTTTCAGTGATTAACGGACATTTTCTGGAAGAGCCCAATATAT
ACAGCATCACAAACTCAGTTGAAGATTTTCAAAATTACAGCGTTTTTCCC
GGTGAATATAGTATATAGTGTAGTTTCCAAGTGAGAGGGATGAGTTTTTG
TTTTTCTTTGCTGGGGACGTTTTATTGACCGACTTTTTCATGTCATTTGG
GAATATGCTATATACAAACAAAGAAAATTAATACACGAAAGAGCGTCAAA
TTAAAAAGCTTTAGGAAATTTTATATTGTCTGTTATAAGAACAGTTCGTA
AGATTACAGAAGAGCTCTTAACAGGTCTTTCATACGCCAATAGGCTTTTT
TCGTAAATTGTCTTGAGTACAACGTACAACTGCCTTATTTTGAAACTATT
ACCAAGGTGATGAAATCCCTTGAGCCTTCAAATTTTACTTTTATAAATAG
AGTAAACTTTTTATTAACTATTTTGGGAATCAATTACCAGCAATAGCAAT
ATTTTGAAAACGAGGTAATCGTTGCTCGTGATGACGTTATTTATGAAAAG
GTCTATTTCTATATTGTAGAAAATGATAATGTTCTTATTAAATTTTTCCT
ATTTCTTTTAAGCGACGTGTGCGAACAAATACCATGGCATTTGTCACAAT
TCTGATGGAAACGTCCAAACTTCCGGAAAACAATTTTTGGGCAATTTCAA
ATCCGCTTATAAGTGTTTTCAACAATGCAAAAAGTAACGATTTTTAATAA
CTTGACCCATTAAAAGGGAAATTCCCACGAAATCTTATACCCACAAATGA
CTTAGAATATATCCTGGAAGTCTATGAACCCCTCTAGAATTGAGAAATTC
GATTACATTGAACCCCGGGGGGGGGGGTACTAAGGCAAGATGGGTTACGG
GGATGCTCCGCTGGTCAGGGTACCTTTTTTAACCTCCACGAGTCCCAGGC
AGGGTTGCAAAAACACCAAAATAAAAAAATCAGTCCCACGTAGGGTGCCT
ATTTTTGGAAAATGTGGGGAAAAGTAAAAATTTGAGAAAATTTTGGAATT
TCAGTCCCATTCAGGGTCACATTTTTCGCAAATTTCGAGTCCCACGTAGG
GTCCATTTTTCGAACCTCAGCGGAGCATTCCCGTCGGGCGACAAGGGTAG
TACCCCCCTCCCCCTGGCATTGAACAGATAGTCCAAAGTGACAAATTTCG
AAAACAAGGAAATCACCAAAATTCTCAATATATTTCGACGCAGATTGTAG
AAGGATTACATAACAACGAAGGGTTTTACTAACTCACTGATAGACGCAGA
TACATGGGCCCCGGCGAGCGATTTTGAGTTAGGGGTCAAAAATGTCGTCC
ACCATGGTTGGGCGAGGAAGAAAACTTTTCACTTTTTACACCCTCAAAAC
ACCTTAAAACGATATCTAATTGGGGAGAATAATAGTTTTTGTGGTTTGAT
TTGGTCTCAAACAAGCTTAAAATACAATCATGGTCGTAATATTTGAGAAA
AAAGGGAAATCCACCGGGAAGTCTTGAAACCACAATCGATTTGTAAGTGC
TCTAAAGTAGGTTGGAAGGGTAGAGTTTTAACATGAGACTTAAAGACCTT
TAGGATCTGATGATCCTAATGTTCAAAAATGGTCCAATAAGGCTCATAAT
GTAGCCTGGAGGTCTAAAAACCCGAGCCAAATTGAAATATCCGATTAAAT
TTGAGAGATGGCCAAAAATCGACTTTCTCGCCCGAACTCCAACTTTCGAA
AAACGAGGAAATAGATTTCGACCATGATTGCAGTAACTCTTAAAAACGCG
TGACATGGTCTACTAAAAAGTGGGGGGGGGCGTAGAGCCCCTGGCCACCG
CCCGATGCAATTCCCGGAGTATCTACCACTACAATGACGCCATCAGTGAA
TGTTAAAAACTAGAACGACACCACGTTGTATCTCTCCTAGTACATGTTTT
TTTAAGCATTGTACTTAGTCTACAAAAAATGTTTTTCCCCTTATTATGGC
TGTTCTTATCTGGGATTTTTCGTAATTTTCCCTAAAATTTTTCTAGGGAT
ATAAGGATCCTTGTAAGCATTTTTCAGCCTTATCAAGCTATTGATCTAAG
CATATCCGAGCCTGTTTTCGAATTTATTAATGCTTTAAAAAAAACATGTA
CAAGTTACATTGCATCCGGGGAAAGTGGGAATAAATTTTTAAAAAAATTG
AGTGTTCTAGTCATAAAACAAAAAAAACTTCAACCGGCTGAAATTTATCT
TAATTTTTTTTCAAACATCAGGCTTGTTATCAAAGATGCTTTGAAATGGA
CTGCTTGTGAAAGTTACGAAAATTTGAATGGTCATCAATGCAACATACTT
TCTAGTGACGTCATGTTGGGCAAACCTACCTCTCTGTATCGTGCGTTTTA
TTCAACATGTTGGACGTTCAAACAACAATGCAGTGACCCCATTAATCAAA
GTAAGGCTTTTTTGGATCATTTCCATGTGCAAAAGTCCAGGGGGAAGTCA
GTCAAATTGACCGACGCGTATGATGTGCGGCGGTTAAGGGTATGTTTTTC
AAAATAGCAGAAATGAACTGTAAGGGTGGACTTTTGATAAATGCACTGTA
TGGGTGGAAATCTCAGCAAATCTAGGAAAAATTGCAAATTTTTGCTCGAA
AATCTTGATTTTTTTTGCTCTAGAAGATTTTAAAATTTGAAAAAATGCAC
TGTAAGGGTATGAATTTCACCGATTTTTTTCTGCACTGTAAGGGTGCGAT
TCTAAAAGCCAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043143XLOC_043143Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069228-exon-scaffold_496-1575043694:134768..134944TCONS_00069228-exon-scaffold_496-1575043694:134768..134944Clytia hemisphaericaexon
TCONS_00069228-exon-scaffold_496-1575043694:124612..124732TCONS_00069228-exon-scaffold_496-1575043694:124612..124732Clytia hemisphaericaexon
TCONS_00069228-exon-scaffold_496-1575043694:122580..123073TCONS_00069228-exon-scaffold_496-1575043694:122580..123073Clytia hemisphaericaexon
TCONS_00069228-exon-scaffold_496-1510915933:134768..134944TCONS_00069228-exon-scaffold_496-1510915933:134768..134944Clytia hemisphaericaexon
TCONS_00069228-exon-scaffold_496-1510915933:124612..124732TCONS_00069228-exon-scaffold_496-1510915933:124612..124732Clytia hemisphaericaexon
TCONS_00069228-exon-scaffold_496-1510915933:122580..123073TCONS_00069228-exon-scaffold_496-1510915933:122580..123073Clytia hemisphaericaexon
TCONS_00069228-exon-scaffold_496-1491911889:134768..134944TCONS_00069228-exon-scaffold_496-1491911889:134768..134944Clytia hemisphaericaexon
TCONS_00069228-exon-scaffold_496-1491911889:124612..124732TCONS_00069228-exon-scaffold_496-1491911889:124612..124732Clytia hemisphaericaexon
TCONS_00069228-exon-scaffold_496-1491911889:122580..123073TCONS_00069228-exon-scaffold_496-1491911889:122580..123073Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:122580..134944 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.464351	0.730791	1.23862	2.09171	0.790904	1.53335	0	1.36567	0.69992	2.08194	2.2581	1.34362	0.594089	0.595689	1.09451	0.298171	2.11724	0.8875	1.5064	2.07295	1.28528	2.36331	0.652128	1.86252	0.381061	0.42624	2.23021	1.70971	1.31605	1.63819
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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