TCONS_00069230 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069230
Unique NameTCONS_00069230
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069230 ID=TCONS_00069230|Name=TCONS_00069230|organism=Clytia hemisphaerica|type=transcript|length=1492bp
ATACGAAGATAGAGACAagatgaaaaaaattagtttttctTAAACTTAAA
CTGTACTTTTATGATTTCAGATtcaacaacaataaaaaataaaaccatgA
AGTATCTCATCCATATATTCTCCATAATAATCACAATGTTCCTTCTCACC
AAAATCTCTGCACGTTCCGTCCGGGATCTTTCCGCACAATCTACACCCGG
ATCCTGCCAAACATTACGGTTCAACCGGACAATCATTGTAAACGGATGTC
AACCAATTACTATCTCGGATGCTATGTGTCTGGGAACATGTTTCTCAAAA
GTGTATTCCAAAATCGTCAATCTTACAGCCGTCACCACACATATATGTAG
CTACTGTCTACCGGCGGAGAGAAAAGAACATACATTTATTCTGGATTGTC
CTGGACGTAAAAAAAGCAAGAAATACAAGAAAGAGAAGATCACAACGAGA
TGTGCTTGTAGTGAGTCCAAGAGATGTGCGTAAAGTGTGAAGAAATGTGT
GAACCTTTGACTGGCCTGACTGATACAGGCTTTGTACGGTGACAAAGATG
GATCAAGTTGTCCAGTTGTCTGAGAAATGAAGTTCAGGATGGATTGCTTC
gggaaaaaaactcaaaaaacaaataaagatgACCAAAATGGTCATGCGTT
CCAAGTGCTGAAGTTCAAAGAGCGTGGCCTGGACATTTTGATGGAGCTAT
ATTCCATCTTAGAGGTGATAACTTTTGGAATGGAGGAAAGCCAATGAAAA
TCGTACAAACGGATATCTTTTATACCTTGTACTGGATATTTGAATATTAT
GTaactataaataagaacaagcCCGTGTTACAGAATCGGATTTCCtgtcc
ccactggaaaatttagccaaaaatTGTAAGATCCCAACTGGATTTTAAAA
TTCCAAACATATTAAACCAGGCTATTTTCCATCTCCATGGACATTGAGAC
CCTTCACTTTATCCCACAAAGTAGCCAAGAAACTTTCACCGGGTCGTTAA
GGTAGAGTCTACTATAAGACCTTTTCTCAAAGTCAGGTCTCTATATCTCA
TTATTAAATTTAGCAAGTTTATCCCTTCTTAAACCCAACAAAGTTGCTTT
GATCCGATTAGCATACTCTTAACGACTCTCCTGGAAACTAAGACTTCCAC
ATCCATTGATAAACGGGGAGCGGTTATGCTATTATCTCTTTGCTAAAATG
TATCATTCTTTTAGGATgataaattcaaaaagttatctGAGATTTGCGTC
GACCAAAGGGCCCTGTTTAACCTGGAGGTATGGAAGTAAATTTTTAGCGT
ATAGTTTGAACAGGCCTTTTCCTAAAATTACTGATTATTTTTTTCGCttg
tatttatattttcaaaatttatttatgaCTTGGTTTGTTATCTATATGAC
TTTGTTGCTATGacaatattaatattaatatctTTTTCTAGTGACCTAGA
GTTTTGAACTAGTCACCATGGCTAGATAAGATATGTTGCTCC
Run BLAST on NCBI

protein sequence of Cerberus family protein

>TCONS_00069230-protein ID=TCONS_00069230-protein|Name=Cerberus family protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MISDSTTIKNKTMKYLIHIFSIIITMFLLTKISARSVRDLSAQSTPGSCQ
TLRFNRTIIVNGCQPITISDAMCLGTCFSKVYSKIVNLTAVTTHICSYCL
PAERKEHTFILDCPGRKKSKKYKKEKITTRCACSESKRCA
Run BLAST on NCBI

transcript from alignment at scaffold_496:144481..146747-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069230 ID=TCONS_00069230|Name=TCONS_00069230|organism=Clytia hemisphaerica|type=transcript|length=2267bp|location=Sequence derived from alignment at scaffold_496:144481..146747- (Clytia hemisphaerica)
ATACGAAGATAGAGACAAGATGAAAAAAAGTTAGTTTTTCTTAAACTTAA
ACTGTACTTTTATGATTTCAGATTCAACAACAATAAAAAATAAAACCATG
AAGTATCTCATCCATATATTCTCCATAATAATCACAATGTTCCTTCTCAC
CAAAATCTCTGCACGTTCCGTCCGGGATCTTTCCGCACAATCTACACCCG
GATCCTGCCAAACATTACGGTTCAACCGGACAATCATTGTAAACGGATGT
CAACCAATTACTATCTCGGATGCNTAACCACCCGTTCACAAATTTTTCGT
GCCTCCTAAACTAGTTCCTTTTTTAGTGATCATTAGAGGACATAATGCAG
TGTACCAATCGTCTTTAAAATCCAAAATGAAAAAAGATGAAGGCTACTGC
ATCAATATCTAAACGCTAAACAAATCTTCCACCACCACAAAAAAAACAAA
GTTAAATTGTACTTTAGAATGATGATATCATAGAAGGCCAATATACGTTT
TTTGAAATAACCAATAAGATTTCTTTCCTATAATTATTGCATAATTATTT
CTCCATACGTTGTCTATAAATATTGAGGATTTTTGTGCAAATTTCATTTT
TGTCTCAGACTGAGGTCTCTACTACACTATTCATCAAGAAGGTCCTTCAA
ACAGATATTAGATTTCAAGTCTGGTTTTTGTTTTAACCGTCTAGTATTTT
TGGTTGGAATACATTGAGAATCTTTAGTGCAAATTTACAGATTTTAGTCG
AGGGAGATTAATTTTAGCAAGTATATACGAAGATAGAGACAAGATGAAAA
AAAGTTAGTTTTTCTTAAACTTAAACTGTACTTTTATGATTTCAGATTCA
ACAACAATAAAAAATAAAACCATGAAGTATCTCATCCATATATTCTCCAT
AATAATCACAATGTTCCTTCTCACCAAAATCTCTGCACGTTCCGTCCGGG
ATCTTTCCGCACAATCTACACCCGGATCCTGCCAAACATTACGGTTCAAC
CGGACAATCATTGTAAACGGATGTCAACCAATTACTATCTCGGATGCTAT
GTGTCTGGGAACATGTTTCTCAAAAGTGTATTCCAAAATCGTCAATCTTA
CAGCCGTCACCACACATATATGTAGCTACTGTCTACCGGCGGAGAGAAAA
GAACATACATTTATTCTGGATTGTCCTGGACGTAAAAAAAGCAAGAAATA
CAAGAAAGAGAAGATCACAACGAGATGTGCTTGTAGTGAGTCCAAGAGAT
GTGCGTAAAGTGTGAAGAAATGTGTGAACCTTTGACTGGCCTGACTGATA
CAGGCTTTGTACGGTGACAAAGATGGATCAAGTTGTCCAGTTGTCTGAGA
AATGAAGTTCAGGATGGATTGCTTCGGGAAAAAAACTCAAAAAACAAATA
AAGATGACCAAAATGGTCATGCGTTCCAAGTGCTGAAGTTCAAAGAGCGT
GGCCTGGACATTTTGATGGAGCTATATTCCATCTTAGAGGTGATAACTTT
TGGAATGGAGGAAAGCCAATGAAAATCGTACAAACGGATATCTTTTATAC
CTTGTACTGGATATTTGAATATTATGTAACTATAAATAAGAACAAGCCCG
TGTTACAGAATCGGATTTCCTGTCCCCACTGGAAAATTTAGCCAAAAATT
GTAAGATCCCAACTGGATTTTAAAATTCCAAACATATTAAACCAGGCTAT
TTTCCATCTCCATGGACATTGAGACCCTTCACTTTATCCCACAAAGTAGC
CAAGAAACTTTCACCGGGTCGTTAAGGTAGAGTCTACTATAAGACCTTTT
CTCAAAGTCAGGTCTCTATATCTCATTATTAAATTTAGCAAGTTTATCCC
TTCTTAAACCCAACAAAGTTGCTTTGATCCGATTAGCATACTCTTAACGA
CTCTCCTGGAAACTAAGACTTCCACATCCATTGATAAACGGGGAGCGGTT
ATGCTATTATCTCTTTGCTAAAATGTATCATTCTTTTAGGATGATAAATT
CAAAAAGTTATCTGAGATTTGCGTCGACCAAAGGGCCCTGTTTAACCTGG
AGGTATGGAAGTAAATTTTTAGCGTATAGTTTGAACAGGCCTTTTCCTAA
AATTACTGATTATTTTTTTCGCTTGTATTTATATTTTCAAAATTTATTTA
TGACTTGGTTTGTTATCTATATGACTTTGTTGCTATGACAATATTAATAT
TAATATCTTTTTCTAGTGACCTAGAGTTTTGAACTAGTCACCATGGCTAG
ATAAGATATGTTGCTCC

Coding sequence (CDS) from alignment at scaffold_496:144481..146747-

>TCONS_00069230 ID=TCONS_00069230|Name=TCONS_00069230|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_496:144481..146747- (Clytia hemisphaerica)
ATGATTTCAGATTCAACAACAATAAAAAATAAAACCATGAAGTATCTCAT
CCATATATTCTCCATAATAATCACAATGTTCCTTCTCACCAAAATCTCTG
CACGTTCCGTCCGGGATCTTTCCGCACAATCTACACCCGGATCCTGCCAA
ACATTACGGTTCAACCGGACAATCATTGTAAACGGATGTCAACCAATTAC
TATCTCGGATGCTATGTGTCTGGGAACATGTTTCTCAAAAGTGTATTCCA
AAATCGTCAATCTTACAGCCGTCACCACACATATATGTAGCTACTGTCTA
CCGGCGGAGAGAAAAGAACATACATTTATTCTGGATTGTCCTGGACGTAA
AAAAAGCAAGAAATACAAGAAAGAGAAGATCACAACGAGATGTGCTTGTA
GTGAGTCCAAGAGATGTGCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043145XLOC_043145Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Cerberus family proteinTCONS_00069230-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069230-exon-scaffold_496-1575043694:146719..146747TCONS_00069230-exon-scaffold_496-1575043694:146719..146747Clytia hemisphaericaexon
TCONS_00069230-exon-scaffold_496-1575043694:144481..145943TCONS_00069230-exon-scaffold_496-1575043694:144481..145943Clytia hemisphaericaexon
TCONS_00069230-exon-scaffold_496-1510915933:146719..146747TCONS_00069230-exon-scaffold_496-1510915933:146719..146747Clytia hemisphaericaexon
TCONS_00069230-exon-scaffold_496-1510915933:144481..145943TCONS_00069230-exon-scaffold_496-1510915933:144481..145943Clytia hemisphaericaexon
TCONS_00069230-exon-scaffold_496-1491911889:146719..146747TCONS_00069230-exon-scaffold_496-1491911889:146719..146747Clytia hemisphaericaexon
TCONS_00069230-exon-scaffold_496-1491911889:144481..145943TCONS_00069230-exon-scaffold_496-1491911889:144481..145943Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:144481..146747 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63148	1.72577	0.720112	0.52073	5.78003	4.74426	18.4866	21.5006	9.83343	17.2891	8.54468	6.68508	3.31031	1.83349	5.1659	4.49907	3.75727	2.9149	0.764267	1.04583	0.695128	0.782444	3.26566	4.15078	1.30631	2.59667	0.606666	0.566519	1.16629	0.875561
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006207Cys_knot_C
IPR004133DAN
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069230 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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