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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069234 ID=TCONS_00069234|Name=TCONS_00069234|organism=Clytia hemisphaerica|type=transcript|length=2132bpRun BLAST on NCBI protein sequence of TCONS_00069234-protein >TCONS_00069234-protein ID=TCONS_00069234-protein|Name=TCONS_00069234-protein|organism=Clytia hemisphaerica|type=polypeptide|length=646bp MKNNLIISLLYIFATLRRCQGQCSGNKFPAADNGVCLPCGLNSNSNGTDCRun BLAST on NCBI transcript from alignment at scaffold_496:293357..306177- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00069234 ID=TCONS_00069234|Name=TCONS_00069234|organism=Clytia hemisphaerica|type=transcript|length=12821bp|location=Sequence derived from alignment at scaffold_496:293357..306177- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_496:293357..306177- >TCONS_00069234 ID=TCONS_00069234|Name=TCONS_00069234|organism=Clytia hemisphaerica|type=CDS|length=27132bp|location=Sequence derived from alignment at scaffold_496:293357..306177- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00069234 vs. Swiss-Prot (Human)
Match: FGFR2 (Fibroblast growth factor receptor 2 OS=Homo sapiens GN=FGFR2 PE=1 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 6.870e-54 Identity = 108/258 (41.86%), Postives = 161/258 (62.40%), Query Frame = 2
Query: 1370 FEYNRQQLEFKYKLGEGQFGCVYKAEAIDI-AGKPGKS-TVAVKVLKANPEEKDKQEFIDELDLLKLIKPHPNVVRLLGCCTKRGQQLAMIFEVMPSGDLQNLLRKTKKRADE----TNQPIDEMIDIGEFLRFAIDIANGMDHLSFHKIVHRDLAARNVLVGNNRVCKISDMGLARPLNDDGVFHREKEAKLPIKWMSPESIKYGRSSIKSDVWSFGIVLWEIFTLGASPYPGFKSKEVPALLCHERYRMNKPEHCS 2125
+E+ R +L LGEG FG V AEA+ I KP ++ TVAVK+LK + EKD + + E++++K+I H N++ LLG CT+ G L +I E G+L+ LR + E N+ +E + + + +A GM++L+ K +HRDLAARNVLV N V KI+D GLAR +N+ + + +LP+KWM+PE++ + +SDVWSFG+++WEIFTLG SPYPG +E+ LL E +RM+KP +C+
Sbjct: 474 WEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGP-LYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLL-KEGHRMDKPANCT 729 The following BLAST results are available for this feature:
BLAST of TCONS_00069234 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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