TCONS_00069249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069249
Unique NameTCONS_00069249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069249 ID=TCONS_00069249|Name=TCONS_00069249|organism=Clytia hemisphaerica|type=transcript|length=1342bp
ATCNTTCTCTGGTCATCGGTGATTGCACCATTGACGATTGTGCAACCATC
AAATGTGTTGCCACAAATGATATCGGTGATGTATCATGTACTGCCGACCT
CAATGTGGAGAGAGAAGCGGTCATTCCCAAAGCAAATTTGTTACCACCAA
AGACTAGCATTGCCGAAGCTTCCAAACCTTTCGACGTATCAGTCAACATT
GAAAATACATTATCTGTGATCTGGTTGTTCAACGGTGAAGAAGTTGATAA
ATCGTACAAGACCTCACAAGATGGTGACCAGTATACAATGCAAATTCCAT
CAATGAAACCAGCACTGTCTGGCAAATATGCTGTTGAGGCAATATCACCA
ACTGGGCAAGTCTTGAAAGAAGAATTCGAAATCAAATGCAAAGACATTGT
ACCAACAATACAATCTGCATCTGATAAAACCACAACGATCGAAGAAGGTA
AACCCATGGAACTCTCCATCACCGTTGCAAACGTTGACAAGACCAAATGG
TTGTACAATGGGAAGAAAGTCGGACCAGCTGTCAAACTCAATGAGAAAGG
CGATACTTATACTTTGAGTATTGCTAGCATGAAGAAAAGCAATGCTGGCA
CTTATGTGTTTGAAGCATCGTCTGTTACTGGACATGTTGTTAAAGAGTCG
TTTGACGTTCATTTCAGAGATCCAAATAATCCAAACTTACCGCGCGATCT
ACCAAAAGAATTGAAACTGAAGACAGGTGAAGCTTTACTTCTCGAGGTCT
GCATGGGTGTTGATGAACCTCATGACGTCATCTGGGAGAAGAACGGCACC
ATGTTGAATAATGACGAAGAATCTAGTGCTGAAATGGGCTTCGACGGCGC
GTGCAATTTCCTTAGAATACAACGTACAGAAAGTGAAGACGCAGGTCTTT
ATGAAGTTTTTGGTGAGCaaggaacaaatgaaatctcCTTCTCAACAATG
GTACAGGTTGGAGATAAGGTACCTCCACATGTTGCACCTAAAAAGAAAGG
TCCTGAAGTCTCTAGAAAACCAAGTAGACAGGGTAGTATTGATGGGGTTG
GAGTTCGCTCTCCACCACCTCCAGTGGCCAGGAAACCATCGAGAGATGGG
TCAGTAGATAGTGGTAGTTTGCCATCATCAAGGTCATCCTCAAGGTCTGT
ATCTATAGACCATAGTGATGGAAAGATTAAGTCACCACCACCTCCAACAT
TGAGGAAACCATCGAGAGGTGCTTCAAAAGATATCATCAATGACGACATG
ATTTTTCCCATGGAGGAACAACTGGCCGAAGAAGCACCATCTGTTTTGCC
GAAACAAAGATCATCAAGAAAAGGATCATACGATAATGAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_496:432382..434976-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069249 ID=TCONS_00069249|Name=TCONS_00069249|organism=Clytia hemisphaerica|type=transcript|length=2595bp|location=Sequence derived from alignment at scaffold_496:432382..434976- (Clytia hemisphaerica)
ATCNTTCTCTGGTCATCGGTGATTGCACCATTGACGATTGTGCAACCATC
AAATGTGTTGCCACAAATGATATCGGTGATGTATCATGTACTGCCGACCT
CAATGTGGAGAGAGAAGGTACAGATTTTGTTTTCATTCTAGCTGAATTCT
CTGTTTTCAAAGCAATCAATGAATTCTTCGTTGNTTGATTTGTTTATTTT
GATTGGGTGTATAATTGGATTTTATGCTTAATCTCTTATTTACATTATTG
AGAAGAGGAACGTGTTACCTATTGCTTAATCAAATGGTAGCTGGTGATTT
AGCAGACATCCAAACAACGTCCATAGAACAAACATGACACCCATTGATGT
TAGATAATCATTGAAACAACGTTGGCTGTCGATTGGGTTAGCTTCTCTCT
CGGCAATCTTCTGGAATCAGAATCGGCATTATTATCTTACAATAATTTTA
CCTTAGAACCCGAACCACAAATCNTCCACAGCGGTCATTCCCAAAGCAAA
TTTGTTACCACCAAAGACTAGCATTGCCGAAGCTTCCAAACCTTTCGACG
TATCAGTCAACATTGAAAATACATTATCTGTGATCTGGTTGTTCAACGGT
GAAGAAGTTGATAAATCGTACAAGACCTCACAAGATGGTGACCAGTATAC
AATGCAAATTCCATCAATGAAACCAGCACTGTCTGGCAAATATGCTGTTG
AGGCAATATCACCAACTGGGCAAGTCTTGAAAGAAGAATTCGAAATCAAA
TGCAAAGGTAGTTACATCTCAAATGCTTGGTCATCAATGTTACATACCTT
AAAGCTTCCGTTCAACTAAAGCATCTACAAATTATTATGCCATAGCCCTT
TTCTATTCCCTCTCGGACATCCTGAGATAACAATAAATCTGTCCGCCAAC
TGATTAAAGCTGTCTGACTGAGTAGAAAGTTTCCAGAAGGAAATTGTTAT
AGTTTGACGAAATCTTTGTATCCTTTGAACGTTTTAATTATCAGGGAGTG
ATCTAATTTACTTTCATTTTATCCTTAATTACTTACAAGACATTGTACCA
ACAATACAATCTGCATCTGATAAAACCACAACGATCGAAGAAGGTAAACC
CATGGAACTCTCCATCACCGTTGCAAACGTTGACAAGACCAAATGGTTGT
ACAATGGGAAGAAAGTCGGACCAGCTGTCAAACTCAATGAGAAAGGCGAT
ACTTATACTTTGAGTATTGCTAGCATGAAGAAAAGCAATGCTGGCACTTA
TGTGTTTGAAGCATCGTCTGTTACTGGACATGTTGTTAAAGAGTCGTTTG
ACGTTCATTTCAGAGGTAAGTATCTAAATCAAATCTTCGGGAATGAAAAG
CATCGTTTTTATGTACTATACCTTCCTCGACGCAAAGATTCACTCATTAA
CACAAAAAAGAACGAAACCGACGATTTACAACAATTTTTCTCACGCATAC
ACACAAAAACGTTCACTAACCTTTCTCAAAAAAGACAAATATTAACCTAT
TTTTTTCTTCATTTTTATAACCTACCTACTAACAGATCCAAATAATCCAA
ACTTACCGCGCGATCTACCAAAAGAATTGAAACTGAAGACAGGTGAAGCT
TTACTTCTCGAGGTCTGCATGGGTGTTGATGAACCTCATGACGTCATCTG
GGAGAAGAACGGCACCATGTTGAATAATGACGAAGAATCTAGTGCTGAAA
TGGGCTTCGACGGCGCGTGCAATTTCCTTAGAATACAACGTACAGAAAGT
GAAGACGCAGGTCTTTATGAAGTTTTTGGTGAGCAAGGAACAAATGAAAT
CTCCTTCTCAACAATGGTACAGGTTGGAGATAAGGTACCTCCACATGTTG
CACCTAAAAAGAAAGGTCCTGAAGTCTCTAGAAAACCAAGTAGACAGGGT
AGTATTGATGGGGTTGGAGTTCGCTCTCCACCACCTCCAGTGGCCAGGAA
ACCATCGAGAGATGGGTCAGTAGATAGTGGTAGTTTGCCATCATCAAGGT
CATCCTCAAGGTCTGTATCTATAGACCATAGTGATGGAAAGATTAAGTCA
CCACCACCTCCAACATTGAGGAAACCATCGAGAGGTGCTTCAAAAGATAT
CATCAATGACGACATGATTTTTCCCATGGAGGAACAACTGGCCGAAGAAG
CACCATCTGTTTTGCCGAAACAAAGATCATCAAGAAAAGGTTAGTGATTA
TCTTCTTCTTCTTTTTTCTAATTCCTCATTTACCCCCTTCTCTATACTTT
TAAGATTAGTTTCAGTGATTTTCTCAGAAAGACTTTTCACTATTTAAAGC
GTTACGTTTGGTTAAATAGGCTAATTTGAAACTAACACCAGTTTCTGCAA
TAAATTATTTGCTACACGAACTAATTTTACGTTTACTATCACTGCTGTAT
TATATCTACAACACATATTACACATAACGTAACATAACAATTACATATAA
TAATACACTCACACAACACAATACTATACACTGATCATAAAATGCACATA
CATACACATTTTCTTACACGTTCACGTATAACATAATAATACGTAATTAC
ACATATTTTTTGTAAATATTACATAGGATCATACGATAATGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043151XLOC_043151Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069249-exon-scaffold_496-1575043694:434860..434976TCONS_00069249-exon-scaffold_496-1575043694:434860..434976Clytia hemisphaericaexon
TCONS_00069249-exon-scaffold_496-1575043694:434220..434495TCONS_00069249-exon-scaffold_496-1575043694:434220..434495Clytia hemisphaericaexon
TCONS_00069249-exon-scaffold_496-1575043694:433662..433937TCONS_00069249-exon-scaffold_496-1575043694:433662..433937Clytia hemisphaericaexon
TCONS_00069249-exon-scaffold_496-1575043694:432788..433441TCONS_00069249-exon-scaffold_496-1575043694:432788..433441Clytia hemisphaericaexon
TCONS_00069249-exon-scaffold_496-1575043694:432382..432400TCONS_00069249-exon-scaffold_496-1575043694:432382..432400Clytia hemisphaericaexon
TCONS_00069249-exon-scaffold_496-1510915933:434860..434976TCONS_00069249-exon-scaffold_496-1510915933:434860..434976Clytia hemisphaericaexon
TCONS_00069249-exon-scaffold_496-1510915933:434220..434495TCONS_00069249-exon-scaffold_496-1510915933:434220..434495Clytia hemisphaericaexon
TCONS_00069249-exon-scaffold_496-1510915933:433662..433937TCONS_00069249-exon-scaffold_496-1510915933:433662..433937Clytia hemisphaericaexon
TCONS_00069249-exon-scaffold_496-1510915933:432788..433441TCONS_00069249-exon-scaffold_496-1510915933:432788..433441Clytia hemisphaericaexon
TCONS_00069249-exon-scaffold_496-1510915933:432382..432400TCONS_00069249-exon-scaffold_496-1510915933:432382..432400Clytia hemisphaericaexon
TCONS_00069249-exon-scaffold_496-1491911889:434860..434976TCONS_00069249-exon-scaffold_496-1491911889:434860..434976Clytia hemisphaericaexon
TCONS_00069249-exon-scaffold_496-1491911889:434220..434495TCONS_00069249-exon-scaffold_496-1491911889:434220..434495Clytia hemisphaericaexon
TCONS_00069249-exon-scaffold_496-1491911889:433662..433937TCONS_00069249-exon-scaffold_496-1491911889:433662..433937Clytia hemisphaericaexon
TCONS_00069249-exon-scaffold_496-1491911889:432788..433441TCONS_00069249-exon-scaffold_496-1491911889:432788..433441Clytia hemisphaericaexon
TCONS_00069249-exon-scaffold_496-1491911889:432382..432400TCONS_00069249-exon-scaffold_496-1491911889:432382..432400Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:432382..434976 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.161376	0.108675	0	0.121739	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.282359	0.455321	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top